RNA–Protein interactions for RNA: ENST00000345795.6

CASC4-202, Transcript of cancer susceptibility 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CASC4, Length 3,764 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-202ENST00000345795 KRTAP10-4P60372 401 aaPredicted RBP6.98□□□□□ -1.29
CASC4-202ENST00000345795 KRTAP10-8P60410 259 aa6.96□□□□□ -1.29
CASC4-202ENST00000345795 RPS29P62273 56 aaKnown RBP6.95□□□□□ -1.3
CASC4-202ENST00000345795 RPL37P61927 97 aaKnown RBP6.95□□□□□ -1.3
CASC4-202ENST00000345795 RYR2Q92736 4967 aa6.94□□□□□ -1.3
CASC4-202ENST00000345795 KRTAP17-1Q9BYP8 105 aa6.93□□□□□ -1.3
CASC4-202ENST00000345795 PKD1P98161 4303 aa6.93□□□□□ -1.3
CASC4-202ENST00000345795 KRTAP3-1Q9BYR8 98 aa6.93□□□□□ -1.3
CASC4-202ENST00000345795 CSAG1Q6PB30 78 aa6.92□□□□□ -1.3
CASC4-202ENST00000345795 H1FX-AS1Q4G0G2 97 aa6.89□□□□□ -1.31
CASC4-202ENST00000345795 LRP2P98164 4655 aa6.87□□□□□ -1.31
CASC4-202ENST00000345795 EPPK1P58107 5090 aaKnown RBP6.86□□□□□ -1.31
CASC4-202ENST00000345795 A6NN06 94 aa6.85□□□□□ -1.31
CASC4-202ENST00000345795 H0YAA0 97 aa6.83□□□□□ -1.32
CASC4-202ENST00000345795 P0C880 135 aa6.83□□□□□ -1.32
CASC4-202ENST00000345795 M0R2T5 61 aa6.82□□□□□ -1.32
CASC4-202ENST00000345795 MT1HL1P0DM35 61 aa6.81□□□□□ -1.32
CASC4-202ENST00000345795 M0QZ58 72 aa6.79□□□□□ -1.32
CASC4-202ENST00000345795 R4GN34 69 aa6.79□□□□□ -1.32
CASC4-202ENST00000345795 SEC61BP60468 96 aaKnown RBP6.76□□□□□ -1.33
CASC4-202ENST00000345795 LPAP08519 4548 aa6.75□□□□□ -1.33
CASC4-202ENST00000345795 HSPG2P98160 4391 aa6.74□□□□□ -1.33
CASC4-202ENST00000345795 MUC2Q02817 5179 aa6.7□□□□□ -1.34
CASC4-202ENST00000345795 C10orf95Q9H7T3 257 aa6.68□□□□□ -1.34
CASC4-202ENST00000345795 HERC2O95714 4834 aa6.66□□□□□ -1.34
CASC4-202ENST00000345795 CAMK2N1Q7Z7J9 78 aa6.65□□□□□ -1.34
CASC4-202ENST00000345795 ABCA13Q86UQ4 5058 aa6.64□□□□□ -1.35
CASC4-202ENST00000345795 TPRXLQ17RH7 258 aa6.63□□□□□ -1.35
CASC4-202ENST00000345795 KRTAP13-4Q3LI77 160 aa6.63□□□□□ -1.35
CASC4-202ENST00000345795 H3BS24 57 aa6.62□□□□□ -1.35
CASC4-202ENST00000345795 PKHD1L1Q86WI1 4243 aa6.56□□□□□ -1.36
CASC4-202ENST00000345795 ROMO1P60602 79 aa6.54□□□□□ -1.36
CASC4-202ENST00000345795 KRTAP3-3Q9BYR6 98 aa6.54□□□□□ -1.36
CASC4-202ENST00000345795 KRTAP10-6P60371 365 aaPredicted RBP6.51□□□□□ -1.37
CASC4-202ENST00000345795 RNF213Q63HN8 5207 aa6.5□□□□□ -1.37
CASC4-202ENST00000345795 HERC1Q15751 4861 aa6.49□□□□□ -1.37
CASC4-202ENST00000345795 KRTAP12-2P59991 146 aa6.48□□□□□ -1.37
CASC4-202ENST00000345795 KRTAP25-1Q3LHN0 102 aa6.43□□□□□ -1.38
CASC4-202ENST00000345795 KRTAP4-1Q9BYQ7 146 aa6.41□□□□□ -1.38
CASC4-202ENST00000345795 KRTAP3-2Q9BYR7 98 aa6.4□□□□□ -1.38
CASC4-202ENST00000345795 PCLOQ9Y6V0 5065 aa6.39□□□□□ -1.39
CASC4-202ENST00000345795 FAT4Q6V0I7 4981 aa6.39□□□□□ -1.39
CASC4-202ENST00000345795 TNXBP22105 4242 aa6.38□□□□□ -1.39
CASC4-202ENST00000345795 LORP23490 312 aaPredicted RBP6.37□□□□□ -1.39
CASC4-202ENST00000345795 KRTAP12-1P59990 96 aa6.3□□□□□ -1.4
CASC4-202ENST00000345795 UBR4Q5T4S7 5183 aa6.27□□□□□ -1.41
CASC4-202ENST00000345795 KRTAP10-10P60014 251 aa6.23□□□□□ -1.41
CASC4-202ENST00000345795 PLAC4Q8WY50 150 aa6.15□□□□□ -1.42
CASC4-202ENST00000345795 FSIP2Q5CZC0 6907 aa6.14□□□□□ -1.43
CASC4-202ENST00000345795 BIRC6Q9NR09 4857 aa6.14□□□□□ -1.43
CASC4-202ENST00000345795 NDUFAF8A1L188 74 aa6.1□□□□□ -1.43
CASC4-202ENST00000345795 HMCN2Q8NDA2 5059 aa6□□□□□ -1.45
CASC4-202ENST00000345795 TNP1P09430 55 aa5.97□□□□□ -1.45
CASC4-202ENST00000345795 LUZP6Q538Z0 58 aa5.93□□□□□ -1.46
CASC4-202ENST00000345795 USH2AO75445 5202 aa5.8□□□□□ -1.48
CASC4-202ENST00000345795 MT1HP80294 61 aa5.78□□□□□ -1.48
CASC4-202ENST00000345795 MUC17Q685J3 4493 aa5.77□□□□□ -1.49
CASC4-202ENST00000345795 MT1FP04733 61 aa5.71□□□□□ -1.5
CASC4-202ENST00000345795 A0A0A0MQY5 61 aa5.7□□□□□ -1.5
CASC4-202ENST00000345795 KRTAP19-2Q3LHN2 52 aa5.67□□□□□ -1.5
CASC4-202ENST00000345795 MT2AP02795 61 aa5.66□□□□□ -1.5
CASC4-202ENST00000345795 FLGP20930 4061 aaPredicted RBP5.65□□□□□ -1.5
CASC4-202ENST00000345795 LCE2CQ5TA81 110 aa5.65□□□□□ -1.5
CASC4-202ENST00000345795 PP632Q6XCG6 107 aa5.59□□□□□ -1.51
CASC4-202ENST00000345795 LCE3AQ5TA76 89 aa5.56□□□□□ -1.52
CASC4-202ENST00000345795 KRTAP19-1Q8IUB9 90 aa5.56□□□□□ -1.52
CASC4-202ENST00000345795 KRTAP15-1Q3LI76 137 aa5.56□□□□□ -1.52
CASC4-202ENST00000345795 KMT2DO14686 5537 aa5.53□□□□□ -1.52
CASC4-202ENST00000345795 PRO2289Q9P1D8 64 aa5.45□□□□□ -1.54
CASC4-202ENST00000345795 KRTAP9-8Q9BYQ0 159 aa5.45□□□□□ -1.54
CASC4-202ENST00000345795 SPRR2GQ9BYE4 73 aa5.43□□□□□ -1.54
CASC4-202ENST00000345795 OBSCNQ5VST9 7968 aa5.43□□□□□ -1.54
CASC4-202ENST00000345795 KRTAP10-12P60413 245 aa5.42□□□□□ -1.54
CASC4-202ENST00000345795 KRTAP10-7P60409 375 aaPredicted RBP5.33□□□□□ -1.56
CASC4-202ENST00000345795 DSTQ03001 7570 aaKnown RBP5.32□□□□□ -1.56
CASC4-202ENST00000345795 KRTAP12-3P60328 96 aa5.3□□□□□ -1.56
CASC4-202ENST00000345795 MT1BP07438 61 aa5.29□□□□□ -1.56
CASC4-202ENST00000345795 CRCT1Q9UGL9 99 aa5.26□□□□□ -1.57
CASC4-202ENST00000345795 KRTAP4-8A0A0G2JLE6 195 aa5.26□□□□□ -1.57
CASC4-202ENST00000345795 KRTAP4-8Q9BYQ9 185 aa5.26□□□□□ -1.57
CASC4-202ENST00000345795 MT1XP80297 61 aa5.24□□□□□ -1.57
CASC4-202ENST00000345795 KRTAP10-5P60370 271 aa5.21□□□□□ -1.57
CASC4-202ENST00000345795 LCE2BO14633 110 aa5.2□□□□□ -1.58
CASC4-202ENST00000345795 KRTAP9-3Q9BYQ3 159 aa5.2□□□□□ -1.58
CASC4-202ENST00000345795 SYNE1Q8NF91 8797 aaKnown RBP5.17□□□□□ -1.58
CASC4-202ENST00000345795 KRTAP23-1A1A580 65 aa5.15□□□□□ -1.58
CASC4-202ENST00000345795 FCGBPQ9Y6R7 5405 aaPredicted RBP5.13□□□□□ -1.59
CASC4-202ENST00000345795 KRTAP19-5Q3LI72 72 aa5.12□□□□□ -1.59
CASC4-202ENST00000345795 KRTAP19-8Q3LI54 63 aa5.11□□□□□ -1.59
CASC4-202ENST00000345795 KRTAP4-7Q9BYR0 210 aa5.02□□□□□ -1.61
CASC4-202ENST00000345795 MUC12Q9UKN1 5478 aa5□□□□□ -1.61
CASC4-202ENST00000345795 KRTAP8-1Q8IUC2 63 aa4.98□□□□□ -1.61
CASC4-202ENST00000345795 SSPOA2VEC9 5147 aa4.94□□□□□ -1.62
CASC4-202ENST00000345795 LCE2AQ5TA79 106 aaPredicted RBP4.91□□□□□ -1.62
CASC4-202ENST00000345795 SYNE2Q8WXH0 6885 aaKnown RBP4.88□□□□□ -1.63
CASC4-202ENST00000345795 SPRR2FQ96RM1 72 aa4.81□□□□□ -1.64
CASC4-202ENST00000345795 LCE3CQ5T5A8 94 aa4.78□□□□□ -1.64
CASC4-202ENST00000345795 KRTAP4-3Q9BYR4 195 aa4.74□□□□□ -1.65
CASC4-202ENST00000345795 MACF1Q9UPN3 7388 aaKnown RBP4.73□□□□□ -1.65
CASC4-202ENST00000345795 MT1GP13640 62 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms