RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 KRTAP25-1Q3LHN0 102 aa7.22□□□□□ -1.25
COL18A1-201ENST00000342220 DMAC1Q96GE9 116 aa7.22□□□□□ -1.25
COL18A1-201ENST00000342220 KRTAP16-1A8MUX0 517 aa7.2□□□□□ -1.26
COL18A1-201ENST00000342220 CRIPTQ9P021 101 aa7.19□□□□□ -1.26
COL18A1-201ENST00000342220 P0C880 135 aa7.16□□□□□ -1.26
COL18A1-201ENST00000342220 A8MUU9 505 aa7.13□□□□□ -1.27
COL18A1-201ENST00000342220 KRTAP10-8P60410 259 aa7.13□□□□□ -1.27
COL18A1-201ENST00000342220 HERC2O95714 4834 aa7.11□□□□□ -1.27
COL18A1-201ENST00000342220 ABCA13Q86UQ4 5058 aa7.09□□□□□ -1.27
COL18A1-201ENST00000342220 A0A0A0MQY5 61 aa7.07□□□□□ -1.28
COL18A1-201ENST00000342220 MT1HL1P0DM35 61 aa7.06□□□□□ -1.28
COL18A1-201ENST00000342220 RPS29P62273 56 aaKnown RBP7.02□□□□□ -1.29
COL18A1-201ENST00000342220 SPINT4Q6UDR6 99 aa7.01□□□□□ -1.29
COL18A1-201ENST00000342220 TNXBP22105 4242 aa6.99□□□□□ -1.29
COL18A1-201ENST00000342220 H0YAA0 97 aa6.99□□□□□ -1.29
COL18A1-201ENST00000342220 NDUFAF8A1L188 74 aa6.98□□□□□ -1.29
COL18A1-201ENST00000342220 LRP2P98164 4655 aa6.97□□□□□ -1.29
COL18A1-201ENST00000342220 LPAP08519 4548 aa6.97□□□□□ -1.29
COL18A1-201ENST00000342220 XP32Q5T750 250 aa6.94□□□□□ -1.3
COL18A1-201ENST00000342220 BIRC6Q9NR09 4857 aa6.94□□□□□ -1.3
COL18A1-201ENST00000342220 C20orf166-AS1Q96NR2 134 aa6.9□□□□□ -1.3
COL18A1-201ENST00000342220 HERC1Q15751 4861 aa6.9□□□□□ -1.3
COL18A1-201ENST00000342220 A0A1B0GU33 70 aa6.87□□□□□ -1.31
COL18A1-201ENST00000342220 PCLOQ9Y6V0 5065 aa6.87□□□□□ -1.31
COL18A1-201ENST00000342220 K7ERS5 55 aa6.86□□□□□ -1.31
COL18A1-201ENST00000342220 RPL37P61927 97 aaKnown RBP6.84□□□□□ -1.31
COL18A1-201ENST00000342220 KRTAP3-1Q9BYR8 98 aa6.82□□□□□ -1.32
COL18A1-201ENST00000342220 MUC2Q02817 5179 aa6.79□□□□□ -1.32
COL18A1-201ENST00000342220 H1FX-AS1Q4G0G2 97 aa6.78□□□□□ -1.32
COL18A1-201ENST00000342220 TPRXLQ17RH7 258 aa6.73□□□□□ -1.33
COL18A1-201ENST00000342220 C10orf95Q9H7T3 257 aa6.72□□□□□ -1.33
COL18A1-201ENST00000342220 KRTAP15-1Q3LI76 137 aa6.71□□□□□ -1.34
COL18A1-201ENST00000342220 COX6B2Q6YFQ2 88 aa6.7□□□□□ -1.34
COL18A1-201ENST00000342220 SEC61BP60468 96 aaKnown RBP6.66□□□□□ -1.34
COL18A1-201ENST00000342220 RNF213Q63HN8 5207 aa6.65□□□□□ -1.34
COL18A1-201ENST00000342220 A0A0D9SG42 100 aa6.62□□□□□ -1.35
COL18A1-201ENST00000342220 LUZP6Q538Z0 58 aa6.61□□□□□ -1.35
COL18A1-201ENST00000342220 S4R3F8 94 aa6.58□□□□□ -1.36
COL18A1-201ENST00000342220 UBR4Q5T4S7 5183 aa6.57□□□□□ -1.36
COL18A1-201ENST00000342220 KRTAP4-1Q9BYQ7 146 aa6.54□□□□□ -1.36
COL18A1-201ENST00000342220 KRTAP3-3Q9BYR6 98 aa6.52□□□□□ -1.37
COL18A1-201ENST00000342220 KRTAP10-6P60371 365 aaPredicted RBP6.49□□□□□ -1.37
COL18A1-201ENST00000342220 FAT4Q6V0I7 4981 aa6.48□□□□□ -1.37
COL18A1-201ENST00000342220 HMCN2Q8NDA2 5059 aa6.46□□□□□ -1.38
COL18A1-201ENST00000342220 KRTAP13-4Q3LI77 160 aa6.46□□□□□ -1.38
COL18A1-201ENST00000342220 M0R2T5 61 aa6.44□□□□□ -1.38
COL18A1-201ENST00000342220 KRTAP3-2Q9BYR7 98 aa6.44□□□□□ -1.38
COL18A1-201ENST00000342220 MUC17Q685J3 4493 aa6.41□□□□□ -1.38
COL18A1-201ENST00000342220 KRTAP12-2P59991 146 aa6.28□□□□□ -1.4
COL18A1-201ENST00000342220 M0QZ58 72 aa6.23□□□□□ -1.41
COL18A1-201ENST00000342220 R4GN34 69 aa6.23□□□□□ -1.41
COL18A1-201ENST00000342220 KRTAP12-1P59990 96 aa6.18□□□□□ -1.42
COL18A1-201ENST00000342220 PLAC4Q8WY50 150 aa6.18□□□□□ -1.42
COL18A1-201ENST00000342220 LORP23490 312 aaPredicted RBP6.14□□□□□ -1.43
COL18A1-201ENST00000342220 KRTAP19-2Q3LHN2 52 aa6.05□□□□□ -1.44
COL18A1-201ENST00000342220 KRTAP10-10P60014 251 aa6.03□□□□□ -1.44
COL18A1-201ENST00000342220 FLGP20930 4061 aaPredicted RBP6.01□□□□□ -1.45
COL18A1-201ENST00000342220 LCE2CQ5TA81 110 aa5.99□□□□□ -1.45
COL18A1-201ENST00000342220 MT1HP80294 61 aa5.98□□□□□ -1.45
COL18A1-201ENST00000342220 CAMK2N1Q7Z7J9 78 aa5.97□□□□□ -1.45
COL18A1-201ENST00000342220 FSIP2Q5CZC0 6907 aa5.94□□□□□ -1.46
COL18A1-201ENST00000342220 MT1FP04733 61 aa5.8□□□□□ -1.48
COL18A1-201ENST00000342220 USH2AO75445 5202 aa5.78□□□□□ -1.48
COL18A1-201ENST00000342220 MT2AP02795 61 aa5.78□□□□□ -1.48
COL18A1-201ENST00000342220 KRTAP9-8Q9BYQ0 159 aa5.7□□□□□ -1.5
COL18A1-201ENST00000342220 PP632Q6XCG6 107 aa5.65□□□□□ -1.51
COL18A1-201ENST00000342220 PRO2289Q9P1D8 64 aa5.64□□□□□ -1.51
COL18A1-201ENST00000342220 KRTAP19-1Q8IUB9 90 aa5.64□□□□□ -1.51
COL18A1-201ENST00000342220 SPRR2GQ9BYE4 73 aa5.53□□□□□ -1.52
COL18A1-201ENST00000342220 LCE2AQ5TA79 106 aaPredicted RBP5.49□□□□□ -1.53
COL18A1-201ENST00000342220 TNP1P09430 55 aa5.47□□□□□ -1.53
COL18A1-201ENST00000342220 KRTAP9-3Q9BYQ3 159 aa5.46□□□□□ -1.54
COL18A1-201ENST00000342220 SPRR5A0A1B0GTR4 108 aa5.45□□□□□ -1.54
COL18A1-201ENST00000342220 LCE2BO14633 110 aa5.42□□□□□ -1.54
COL18A1-201ENST00000342220 MT1BP07438 61 aa5.41□□□□□ -1.54
COL18A1-201ENST00000342220 KMT2DO14686 5537 aa5.4□□□□□ -1.55
COL18A1-201ENST00000342220 INE1O15225 51 aa5.38□□□□□ -1.55
COL18A1-201ENST00000342220 KRTAP23-1A1A580 65 aa5.33□□□□□ -1.56
COL18A1-201ENST00000342220 KRTAP19-8Q3LI54 63 aa5.3□□□□□ -1.56
COL18A1-201ENST00000342220 MT1XP80297 61 aa5.27□□□□□ -1.57
COL18A1-201ENST00000342220 KRTAP10-5P60370 271 aa5.25□□□□□ -1.57
COL18A1-201ENST00000342220 SSPOA2VEC9 5147 aa5.24□□□□□ -1.57
COL18A1-201ENST00000342220 LCE3AQ5TA76 89 aa5.23□□□□□ -1.57
COL18A1-201ENST00000342220 KRTAP10-7P60409 375 aaPredicted RBP5.22□□□□□ -1.57
COL18A1-201ENST00000342220 KRTAP10-12P60413 245 aa5.16□□□□□ -1.58
COL18A1-201ENST00000342220 KRTAP4-8A0A0G2JLE6 195 aa5.14□□□□□ -1.59
COL18A1-201ENST00000342220 KRTAP4-8Q9BYQ9 185 aa5.14□□□□□ -1.59
COL18A1-201ENST00000342220 KRTAP8-1Q8IUC2 63 aa5.03□□□□□ -1.6
COL18A1-201ENST00000342220 FCGBPQ9Y6R7 5405 aaPredicted RBP5.01□□□□□ -1.61
COL18A1-201ENST00000342220 KRTAP12-3P60328 96 aa4.98□□□□□ -1.61
COL18A1-201ENST00000342220 KRTAP9-2Q9BYQ4 174 aa4.95□□□□□ -1.62
COL18A1-201ENST00000342220 MUC12Q9UKN1 5478 aa4.95□□□□□ -1.62
COL18A1-201ENST00000342220 KRTAP19-5Q3LI72 72 aa4.94□□□□□ -1.62
COL18A1-201ENST00000342220 DSTQ03001 7570 aaKnown RBP4.93□□□□□ -1.62
COL18A1-201ENST00000342220 SYNE2Q8WXH0 6885 aaKnown RBP4.93□□□□□ -1.62
COL18A1-201ENST00000342220 MACF1Q9UPN3 7388 aaKnown RBP4.92□□□□□ -1.62
COL18A1-201ENST00000342220 KRTAP19-6Q3LI70 58 aa4.84□□□□□ -1.64
COL18A1-201ENST00000342220 LCE2DQ5TA82 110 aaPredicted RBP4.83□□□□□ -1.64
COL18A1-201ENST00000342220 CRCT1Q9UGL9 99 aa4.77□□□□□ -1.65
COL18A1-201ENST00000342220 KRTAP4-7Q9BYR0 210 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 185.5 ms