RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 ABCA13Q86UQ4 5058 aa6.58□□□□□ -1.36
RTN3-203ENST00000341307 PCLOQ9Y6V0 5065 aa6.58□□□□□ -1.36
RTN3-203ENST00000341307 TYMSOSQ8TAI1 123 aa6.57□□□□□ -1.36
RTN3-203ENST00000341307 KRTAP4-5Q9BYR2 181 aa6.56□□□□□ -1.36
RTN3-203ENST00000341307 KRTAP13-2Q52LG2 175 aa6.56□□□□□ -1.36
RTN3-203ENST00000341307 A0A1B0GU33 70 aa6.55□□□□□ -1.36
RTN3-203ENST00000341307 KRTAP1-4P0C5Y4 121 aa6.53□□□□□ -1.36
RTN3-203ENST00000341307 TPRXLQ17RH7 258 aa6.53□□□□□ -1.36
RTN3-203ENST00000341307 H1FX-AS1Q4G0G2 97 aa6.52□□□□□ -1.37
RTN3-203ENST00000341307 MYCBP2O75592 4640 aa6.5□□□□□ -1.37
RTN3-203ENST00000341307 Q8N1X5 172 aa6.49□□□□□ -1.37
RTN3-203ENST00000341307 K7ERS5 55 aa6.45□□□□□ -1.38
RTN3-203ENST00000341307 LRP1Q07954 4544 aaKnown RBP6.44□□□□□ -1.38
RTN3-203ENST00000341307 Q5VSD8 79 aa6.44□□□□□ -1.38
RTN3-203ENST00000341307 KRTAP3-3Q9BYR6 98 aa6.43□□□□□ -1.38
RTN3-203ENST00000341307 KRTAP3-2Q9BYR7 98 aa6.43□□□□□ -1.38
RTN3-203ENST00000341307 C10orf95Q9H7T3 257 aa6.41□□□□□ -1.38
RTN3-203ENST00000341307 KRTAP10-4P60372 401 aaPredicted RBP6.39□□□□□ -1.39
RTN3-203ENST00000341307 LUZP6Q538Z0 58 aa6.36□□□□□ -1.39
RTN3-203ENST00000341307 COX6B2Q6YFQ2 88 aa6.36□□□□□ -1.39
RTN3-203ENST00000341307 HERC1Q15751 4861 aa6.34□□□□□ -1.39
RTN3-203ENST00000341307 FAT3Q8TDW7 4589 aa6.29□□□□□ -1.4
RTN3-203ENST00000341307 RPL37P61927 97 aaKnown RBP6.28□□□□□ -1.4
RTN3-203ENST00000341307 KRTAP3-1Q9BYR8 98 aa6.28□□□□□ -1.4
RTN3-203ENST00000341307 PKHD1L1Q86WI1 4243 aa6.27□□□□□ -1.41
RTN3-203ENST00000341307 SEC61BP60468 96 aaKnown RBP6.27□□□□□ -1.41
RTN3-203ENST00000341307 DMBT1Q9UGM3 2413 aaPredicted RBP6.24□□□□□ -1.41
RTN3-203ENST00000341307 RPS29P62273 56 aaKnown RBP6.21□□□□□ -1.42
RTN3-203ENST00000341307 C9orf92A6NGG3 77 aa6.21□□□□□ -1.42
RTN3-203ENST00000341307 KRTAP13-4Q3LI77 160 aa6.21□□□□□ -1.42
RTN3-203ENST00000341307 LCE2DQ5TA82 110 aaPredicted RBP6.19□□□□□ -1.42
RTN3-203ENST00000341307 A0A0D9SG42 100 aa6.18□□□□□ -1.42
RTN3-203ENST00000341307 TNXBP22105 4242 aa6.17□□□□□ -1.42
RTN3-203ENST00000341307 MT1HL1P0DM35 61 aa6.15□□□□□ -1.43
RTN3-203ENST00000341307 KRTAP10-6P60371 365 aaPredicted RBP6.14□□□□□ -1.43
RTN3-203ENST00000341307 KRTAP10-8P60410 259 aa6.11□□□□□ -1.43
RTN3-203ENST00000341307 S4R3F8 94 aa6.07□□□□□ -1.44
RTN3-203ENST00000341307 HMCN2Q8NDA2 5059 aa6.05□□□□□ -1.44
RTN3-203ENST00000341307 XP32Q5T750 250 aa6.05□□□□□ -1.44
RTN3-203ENST00000341307 KRTAP12-2P59991 146 aa6.04□□□□□ -1.44
RTN3-203ENST00000341307 LPAP08519 4548 aa6.01□□□□□ -1.45
RTN3-203ENST00000341307 LRP2P98164 4655 aa6.01□□□□□ -1.45
RTN3-203ENST00000341307 UBR4Q5T4S7 5183 aa6□□□□□ -1.45
RTN3-203ENST00000341307 KRTAP12-1P59990 96 aa5.94□□□□□ -1.46
RTN3-203ENST00000341307 PLAC4Q8WY50 150 aa5.92□□□□□ -1.46
RTN3-203ENST00000341307 RNF213Q63HN8 5207 aa5.92□□□□□ -1.46
RTN3-203ENST00000341307 MUC2Q02817 5179 aa5.85□□□□□ -1.47
RTN3-203ENST00000341307 KRTAP23-1A1A580 65 aa5.82□□□□□ -1.48
RTN3-203ENST00000341307 LCE2CQ5TA81 110 aa5.74□□□□□ -1.49
RTN3-203ENST00000341307 LCE2AQ5TA79 106 aaPredicted RBP5.72□□□□□ -1.49
RTN3-203ENST00000341307 M0QZ58 72 aa5.62□□□□□ -1.51
RTN3-203ENST00000341307 CAMK2N1Q7Z7J9 78 aa5.61□□□□□ -1.51
RTN3-203ENST00000341307 LCE2BO14633 110 aa5.6□□□□□ -1.51
RTN3-203ENST00000341307 FAT4Q6V0I7 4981 aa5.6□□□□□ -1.51
RTN3-203ENST00000341307 KRTAP4-1Q9BYQ7 146 aa5.56□□□□□ -1.52
RTN3-203ENST00000341307 PRO2289Q9P1D8 64 aa5.54□□□□□ -1.52
RTN3-203ENST00000341307 MUC17Q685J3 4493 aa5.54□□□□□ -1.52
RTN3-203ENST00000341307 PP632Q6XCG6 107 aa5.45□□□□□ -1.54
RTN3-203ENST00000341307 SPRR5A0A1B0GTR4 108 aa5.44□□□□□ -1.54
RTN3-203ENST00000341307 KRTAP19-2Q3LHN2 52 aa5.39□□□□□ -1.55
RTN3-203ENST00000341307 R4GN34 69 aa5.34□□□□□ -1.55
RTN3-203ENST00000341307 LORP23490 312 aaPredicted RBP5.32□□□□□ -1.56
RTN3-203ENST00000341307 INE1O15225 51 aa5.27□□□□□ -1.57
RTN3-203ENST00000341307 FLGP20930 4061 aaPredicted RBP5.21□□□□□ -1.58
RTN3-203ENST00000341307 MT1HP80294 61 aa5.21□□□□□ -1.58
RTN3-203ENST00000341307 M0R2T5 61 aa5.13□□□□□ -1.59
RTN3-203ENST00000341307 FSIP2Q5CZC0 6907 aa5.12□□□□□ -1.59
RTN3-203ENST00000341307 TNP1P09430 55 aa5.04□□□□□ -1.6
RTN3-203ENST00000341307 KRTAP9-8Q9BYQ0 159 aa4.97□□□□□ -1.61
RTN3-203ENST00000341307 KRTAP9-2Q9BYQ4 174 aa4.95□□□□□ -1.62
RTN3-203ENST00000341307 USH2AO75445 5202 aa4.94□□□□□ -1.62
RTN3-203ENST00000341307 MT1FP04733 61 aa4.92□□□□□ -1.62
RTN3-203ENST00000341307 MT2AP02795 61 aa4.91□□□□□ -1.62
RTN3-203ENST00000341307 KRTAP10-10P60014 251 aa4.89□□□□□ -1.63
RTN3-203ENST00000341307 KRTAP19-1Q8IUB9 90 aa4.89□□□□□ -1.63
RTN3-203ENST00000341307 SPRR2GQ9BYE4 73 aa4.86□□□□□ -1.63
RTN3-203ENST00000341307 KRTAP9-3Q9BYQ3 159 aa4.79□□□□□ -1.64
RTN3-203ENST00000341307 SSPOA2VEC9 5147 aa4.79□□□□□ -1.64
RTN3-203ENST00000341307 LCE3AQ5TA76 89 aa4.77□□□□□ -1.65
RTN3-203ENST00000341307 CRCT1Q9UGL9 99 aa4.69□□□□□ -1.66
RTN3-203ENST00000341307 MT1BP07438 61 aa4.68□□□□□ -1.66
RTN3-203ENST00000341307 KRTAP19-8Q3LI54 63 aa4.68□□□□□ -1.66
RTN3-203ENST00000341307 KRTAP9-6A0A140TA67 174 aa4.67□□□□□ -1.66
RTN3-203ENST00000341307 KRTAP10-12P60413 245 aa4.63□□□□□ -1.67
RTN3-203ENST00000341307 KRTAP8-1Q8IUC2 63 aa4.61□□□□□ -1.67
RTN3-203ENST00000341307 FCGBPQ9Y6R7 5405 aaPredicted RBP4.6□□□□□ -1.67
RTN3-203ENST00000341307 KRTAP10-5P60370 271 aa4.58□□□□□ -1.68
RTN3-203ENST00000341307 MT1XP80297 61 aa4.58□□□□□ -1.68
RTN3-203ENST00000341307 KRTAP12-3P60328 96 aa4.47□□□□□ -1.69
RTN3-203ENST00000341307 KRTAP10-7P60409 375 aaPredicted RBP4.46□□□□□ -1.69
RTN3-203ENST00000341307 MACF1Q9UPN3 7388 aaKnown RBP4.46□□□□□ -1.7
RTN3-203ENST00000341307 KRTAP19-6Q3LI70 58 aa4.46□□□□□ -1.7
RTN3-203ENST00000341307 SYNE2Q8WXH0 6885 aaKnown RBP4.44□□□□□ -1.7
RTN3-203ENST00000341307 KMT2DO14686 5537 aa4.38□□□□□ -1.71
RTN3-203ENST00000341307 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.36□□□□□ -1.71
RTN3-203ENST00000341307 KRTAP2-3P0C7H8 128 aa4.3□□□□□ -1.72
RTN3-203ENST00000341307 KRTAP2-4Q9BYR9 128 aa4.3□□□□□ -1.72
RTN3-203ENST00000341307 KRTAP2-1Q9BYU5 128 aa4.3□□□□□ -1.72
RTN3-203ENST00000341307 KRTAP4-8A0A0G2JLE6 195 aa4.28□□□□□ -1.72
RTN3-203ENST00000341307 KRTAP4-8Q9BYQ9 185 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms