RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CSAG1Q6PB30 78 aa10.56□□□□□ -0.72
SDC3-202ENST00000339394 CCDC179H3BU77 68 aa10.55□□□□□ -0.72
SDC3-202ENST00000339394 NDUFC1O43677 76 aa10.54□□□□□ -0.72
SDC3-202ENST00000339394 H7BZZ5 65 aa10.52□□□□□ -0.72
SDC3-202ENST00000339394 ACYP2P14621 99 aa10.52□□□□□ -0.72
SDC3-202ENST00000339394 MT2AP02795 61 aa10.5□□□□□ -0.73
SDC3-202ENST00000339394 MT1FP04733 61 aa10.43□□□□□ -0.74
SDC3-202ENST00000339394 KRTAP10-10P60014 251 aa10.39□□□□□ -0.75
SDC3-202ENST00000339394 KRTAP9-2Q9BYQ4 174 aa10.33□□□□□ -0.76
SDC3-202ENST00000339394 CHKB-CPT1BH3BT56 60 aa10.32□□□□□ -0.76
SDC3-202ENST00000339394 LCE2DQ5TA82 110 aaPredicted RBP10.31□□□□□ -0.76
SDC3-202ENST00000339394 COA5Q86WW8 74 aa10.26□□□□□ -0.77
SDC3-202ENST00000339394 H0YAA0 97 aa10.25□□□□□ -0.77
SDC3-202ENST00000339394 KRTAP9-3Q9BYQ3 159 aa10.25□□□□□ -0.77
SDC3-202ENST00000339394 SPTSSBQ8NFR3 76 aa10.24□□□□□ -0.77
SDC3-202ENST00000339394 ADM2Q7Z4H4 148 aa10.18□□□□□ -0.78
SDC3-202ENST00000339394 ATP5EP56381 51 aaPredicted RBP10.17□□□□□ -0.78
SDC3-202ENST00000339394 TMEM258P61165 79 aa10.16□□□□□ -0.78
SDC3-202ENST00000339394 KRTAP9-6A0A140TA67 174 aa10.1□□□□□ -0.79
SDC3-202ENST00000339394 PCP4P48539 62 aa10.1□□□□□ -0.79
SDC3-202ENST00000339394 LCE2BO14633 110 aa10.06□□□□□ -0.8
SDC3-202ENST00000339394 KRTAP3-2Q9BYR7 98 aa10.05□□□□□ -0.8
SDC3-202ENST00000339394 P0C880 135 aa10.04□□□□□ -0.8
SDC3-202ENST00000339394 KRTAP19-1Q8IUB9 90 aa10.02□□□□□ -0.81
SDC3-202ENST00000339394 CRIPTQ9P021 101 aa10.02□□□□□ -0.81
SDC3-202ENST00000339394 FSIP2Q5CZC0 6907 aa10.02□□□□□ -0.81
SDC3-202ENST00000339394 USH2AO75445 5202 aa10.01□□□□□ -0.81
SDC3-202ENST00000339394 SPRR2GQ9BYE4 73 aa9.98□□□□□ -0.81
SDC3-202ENST00000339394 R4GN34 69 aa9.87□□□□□ -0.83
SDC3-202ENST00000339394 SERP1Q9Y6X1 66 aa9.84□□□□□ -0.83
SDC3-202ENST00000339394 SEC61GP60059 68 aa9.83□□□□□ -0.84
SDC3-202ENST00000339394 M0QZ58 72 aa9.81□□□□□ -0.84
SDC3-202ENST00000339394 KRTAP19-8Q3LI54 63 aa9.8□□□□□ -0.84
SDC3-202ENST00000339394 SSPOA2VEC9 5147 aa9.8□□□□□ -0.84
SDC3-202ENST00000339394 CRCT1Q9UGL9 99 aa9.79□□□□□ -0.84
SDC3-202ENST00000339394 Q5VV11 94 aa9.75□□□□□ -0.85
SDC3-202ENST00000339394 MT1BP07438 61 aa9.73□□□□□ -0.85
SDC3-202ENST00000339394 A0A1B0GU69 56 aa9.71□□□□□ -0.85
SDC3-202ENST00000339394 LINC01558Q9Y6Z2 57 aa9.66□□□□□ -0.86
SDC3-202ENST00000339394 LINC01554Q52M75 96 aa9.65□□□□□ -0.86
SDC3-202ENST00000339394 KRTAP13-4Q3LI77 160 aa9.63□□□□□ -0.87
SDC3-202ENST00000339394 A0A1B0GU33 70 aa9.63□□□□□ -0.87
SDC3-202ENST00000339394 KRTAP19-6Q3LI70 58 aa9.58□□□□□ -0.88
SDC3-202ENST00000339394 PRR15LQ9BU68 103 aa9.58□□□□□ -0.88
SDC3-202ENST00000339394 RPS28P62857 69 aaKnown RBP9.54□□□□□ -0.88
SDC3-202ENST00000339394 SPATA8Q6RVD6 105 aa9.52□□□□□ -0.89
SDC3-202ENST00000339394 PLAC4Q8WY50 150 aa9.5□□□□□ -0.89
SDC3-202ENST00000339394 SMIM26A0A096LP01 95 aa9.49□□□□□ -0.89
SDC3-202ENST00000339394 V9GYY9 64 aa9.47□□□□□ -0.89
SDC3-202ENST00000339394 FCGBPQ9Y6R7 5405 aaPredicted RBP9.47□□□□□ -0.89
SDC3-202ENST00000339394 Q1T7F1 81 aa9.46□□□□□ -0.89
SDC3-202ENST00000339394 A6NN06 94 aa9.43□□□□□ -0.9
SDC3-202ENST00000339394 A0A0D9SG42 100 aa9.4□□□□□ -0.9
SDC3-202ENST00000339394 KRTAP10-5P60370 271 aa9.37□□□□□ -0.91
SDC3-202ENST00000339394 PSPHP1O15172 72 aa9.36□□□□□ -0.91
SDC3-202ENST00000339394 UQCR11O14957 56 aa9.31□□□□□ -0.92
SDC3-202ENST00000339394 A8MU10 97 aa9.29□□□□□ -0.92
SDC3-202ENST00000339394 MT1XP80297 61 aa9.29□□□□□ -0.92
SDC3-202ENST00000339394 PRO2289Q9P1D8 64 aa9.25□□□□□ -0.93
SDC3-202ENST00000339394 KRTAP12-1P59990 96 aa9.23□□□□□ -0.93
SDC3-202ENST00000339394 SPINT4Q6UDR6 99 aa9.22□□□□□ -0.93
SDC3-202ENST00000339394 KRTAP12-2P59991 146 aa9.18□□□□□ -0.94
SDC3-202ENST00000339394 CAMK2N1Q7Z7J9 78 aa9.16□□□□□ -0.94
SDC3-202ENST00000339394 MIR22HGQ0VDD5 57 aa9.16□□□□□ -0.94
SDC3-202ENST00000339394 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.08□□□□□ -0.96
SDC3-202ENST00000339394 MACF1Q9UPN3 7388 aaKnown RBP9.07□□□□□ -0.96
SDC3-202ENST00000339394 A6NED7 52 aa9.06□□□□□ -0.96
SDC3-202ENST00000339394 KRTAP9-7A8MTY7 169 aa9.04□□□□□ -0.96
SDC3-202ENST00000339394 KRTAP10-7P60409 375 aaPredicted RBP8.89□□□□□ -0.99
SDC3-202ENST00000339394 SYNE2Q8WXH0 6885 aaKnown RBP8.88□□□□□ -0.99
SDC3-202ENST00000339394 KMT2DO14686 5537 aa8.87□□□□□ -0.99
SDC3-202ENST00000339394 K7ERS5 55 aa8.84□□□□□ -0.99
SDC3-202ENST00000339394 KRTAP10-12P60413 245 aa8.81□□□□□ -1
SDC3-202ENST00000339394 CDC42SE1Q9NRR8 79 aa8.79□□□□□ -1
SDC3-202ENST00000339394 C10orf95Q9H7T3 257 aa8.77□□□□□ -1.01
SDC3-202ENST00000339394 KRTAP4-8A0A0G2JLE6 195 aa8.71□□□□□ -1.02
SDC3-202ENST00000339394 KRTAP4-8Q9BYQ9 185 aa8.71□□□□□ -1.02
SDC3-202ENST00000339394 KRTAP6-3Q3LI67 103 aa8.68□□□□□ -1.02
SDC3-202ENST00000339394 KRTAP8-1Q8IUC2 63 aa8.62□□□□□ -1.03
SDC3-202ENST00000339394 TNP1P09430 55 aa8.6□□□□□ -1.03
SDC3-202ENST00000339394 KRTAP5-9P26371 169 aa8.56□□□□□ -1.04
SDC3-202ENST00000339394 MUC12Q9UKN1 5478 aa8.5□□□□□ -1.05
SDC3-202ENST00000339394 BRK1Q8WUW1 75 aa8.49□□□□□ -1.05
SDC3-202ENST00000339394 SPRR2FQ96RM1 72 aa8.46□□□□□ -1.06
SDC3-202ENST00000339394 KRTAP25-1Q3LHN0 102 aa8.42□□□□□ -1.06
SDC3-202ENST00000339394 ROMO1P60602 79 aa8.38□□□□□ -1.07
SDC3-202ENST00000339394 MDN1Q9NU22 5596 aa8.38□□□□□ -1.07
SDC3-202ENST00000339394 LCE3AQ5TA76 89 aa8.36□□□□□ -1.07
SDC3-202ENST00000339394 KRTAP19-7Q3SYF9 63 aa8.3□□□□□ -1.08
SDC3-202ENST00000339394 KRTAP19-5Q3LI72 72 aa8.25□□□□□ -1.09
SDC3-202ENST00000339394 MT1EP04732 61 aa8.18□□□□□ -1.1
SDC3-202ENST00000339394 SPRR2EP22531 72 aa8.18□□□□□ -1.1
SDC3-202ENST00000339394 SPRR2BP35325 72 aa8.18□□□□□ -1.1
SDC3-202ENST00000339394 SPRR2AP35326 72 aa8.18□□□□□ -1.1
SDC3-202ENST00000339394 NEBP20929 6669 aa8.17□□□□□ -1.1
SDC3-202ENST00000339394 LCE1AQ5T7P2 110 aa8.17□□□□□ -1.1
SDC3-202ENST00000339394 KRTAP23-1A1A580 65 aa8.14□□□□□ -1.11
SDC3-202ENST00000339394 KRTAP12-3P60328 96 aa8.05□□□□□ -1.12
SDC3-202ENST00000339394 PMAIP1Q13794 54 aa8.03□□□□□ -1.12
SDC3-202ENST00000339394 PRO0628Q9UI54 55 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 149 ms