RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 IGKV2-30P06310 120 aa2.21□□□□□ -2.06
MCF2-201ENST00000338585 TMEM258P61165 79 aa2.21□□□□□ -2.06
MCF2-201ENST00000338585 CYP4F30PQ9H0H9 118 aa2.21□□□□□ -2.06
MCF2-201ENST00000338585 LOC101927531A0A1B0GV80 90 aa2.21□□□□□ -2.06
MCF2-201ENST00000338585 RPL37P61927 97 aaKnown RBP2.2□□□□□ -2.06
MCF2-201ENST00000338585 TPRXLQ17RH7 258 aa2.2□□□□□ -2.06
MCF2-201ENST00000338585 LPAP08519 4548 aa2.2□□□□□ -2.06
MCF2-201ENST00000338585 FAM236DA0A1B0GTK5 79 aa2.2□□□□□ -2.06
MCF2-201ENST00000338585 KRTAP23-1A1A580 65 aa2.2□□□□□ -2.06
MCF2-201ENST00000338585 FAM236CP0DP71 79 aa2.2□□□□□ -2.06
MCF2-201ENST00000338585 HRES1P13985 223 aa2.18□□□□□ -2.06
MCF2-201ENST00000338585 ATP11AUNQ6ZP68 121 aa2.18□□□□□ -2.06
MCF2-201ENST00000338585 C7orf65Q6ZTY9 151 aa2.18□□□□□ -2.06
MCF2-201ENST00000338585 HERC1Q15751 4861 aa2.18□□□□□ -2.06
MCF2-201ENST00000338585 LRP2P98164 4655 aa2.18□□□□□ -2.06
MCF2-201ENST00000338585 SPINK7P58062 85 aa2.18□□□□□ -2.06
MCF2-201ENST00000338585 SPANXA2-OT1Q8N9U9 137 aa2.17□□□□□ -2.06
MCF2-201ENST00000338585 ATP5EP56381 51 aaPredicted RBP2.16□□□□□ -2.06
MCF2-201ENST00000338585 C4orf26Q17RF5 130 aa2.16□□□□□ -2.06
MCF2-201ENST00000338585 HMCN2Q8NDA2 5059 aa2.15□□□□□ -2.06
MCF2-201ENST00000338585 SERP1Q9Y6X1 66 aa2.14□□□□□ -2.07
MCF2-201ENST00000338585 DMAC1Q96GE9 116 aa2.13□□□□□ -2.07
MCF2-201ENST00000338585 COA5Q86WW8 74 aa2.13□□□□□ -2.07
MCF2-201ENST00000338585 KRTAP4-1Q9BYQ7 146 aa2.13□□□□□ -2.07
MCF2-201ENST00000338585 KRTAP3-1Q9BYR8 98 aa2.13□□□□□ -2.07
MCF2-201ENST00000338585 RPS28P62857 69 aaKnown RBP2.13□□□□□ -2.07
MCF2-201ENST00000338585 ACYP2P14621 99 aa2.11□□□□□ -2.07
MCF2-201ENST00000338585 COX6B2Q6YFQ2 88 aa2.11□□□□□ -2.07
MCF2-201ENST00000338585 UBR4Q5T4S7 5183 aa2.11□□□□□ -2.07
MCF2-201ENST00000338585 MPLKIPQ8TAP9 179 aa2.1□□□□□ -2.07
MCF2-201ENST00000338585 MUC2Q02817 5179 aa2.09□□□□□ -2.07
MCF2-201ENST00000338585 A8MUN3 132 aa2.09□□□□□ -2.07
MCF2-201ENST00000338585 SMIM26A0A096LP01 95 aa2.09□□□□□ -2.08
MCF2-201ENST00000338585 CHKB-CPT1BH3BT56 60 aa2.09□□□□□ -2.08
MCF2-201ENST00000338585 MUC17Q685J3 4493 aa2.08□□□□□ -2.08
MCF2-201ENST00000338585 RNF213Q63HN8 5207 aa2.08□□□□□ -2.08
MCF2-201ENST00000338585 PRAC1Q96KF2 57 aa2.07□□□□□ -2.08
MCF2-201ENST00000338585 RBM12B-AS1Q9P1G2 102 aa2.07□□□□□ -2.08
MCF2-201ENST00000338585 KRTAP19-2Q3LHN2 52 aa2.05□□□□□ -2.08
MCF2-201ENST00000338585 H1FX-AS1Q4G0G2 97 aa2.05□□□□□ -2.08
MCF2-201ENST00000338585 LCA10Q71F78 164 aa2.05□□□□□ -2.08
MCF2-201ENST00000338585 MUC5BQ9HC84 5762 aaPredicted RBP2.05□□□□□ -2.08
MCF2-201ENST00000338585 Q1T7F1 81 aa2.04□□□□□ -2.08
MCF2-201ENST00000338585 S4R3F8 94 aa2.04□□□□□ -2.08
MCF2-201ENST00000338585 PSPHP1O15172 72 aa2.04□□□□□ -2.08
MCF2-201ENST00000338585 PRR15LQ9BU68 103 aa2.03□□□□□ -2.08
MCF2-201ENST00000338585 LINC01558Q9Y6Z2 57 aa2.03□□□□□ -2.08
MCF2-201ENST00000338585 SPTSSBQ8NFR3 76 aa2.02□□□□□ -2.09
MCF2-201ENST00000338585 KRTAP5-9P26371 169 aa2.01□□□□□ -2.09
MCF2-201ENST00000338585 Q5VV11 94 aa2.01□□□□□ -2.09
MCF2-201ENST00000338585 A0A1B0GU69 56 aa2□□□□□ -2.09
MCF2-201ENST00000338585 FAT4Q6V0I7 4981 aa2□□□□□ -2.09
MCF2-201ENST00000338585 KRTAP5-11Q6L8G4 156 aa2□□□□□ -2.09
MCF2-201ENST00000338585 PRO0628Q9UI54 55 aa2□□□□□ -2.09
MCF2-201ENST00000338585 CSAG1Q6PB30 78 aa1.99□□□□□ -2.09
MCF2-201ENST00000338585 KRTAP10-7P60409 375 aaPredicted RBP1.99□□□□□ -2.09
MCF2-201ENST00000338585 FLGP20930 4061 aaPredicted RBP1.98□□□□□ -2.09
MCF2-201ENST00000338585 KRTAP10-6P60371 365 aaPredicted RBP1.97□□□□□ -2.09
MCF2-201ENST00000338585 P0C880 135 aa1.97□□□□□ -2.09
MCF2-201ENST00000338585 ADM2Q7Z4H4 148 aa1.97□□□□□ -2.09
MCF2-201ENST00000338585 A8MU10 97 aa1.96□□□□□ -2.1
MCF2-201ENST00000338585 MT1HP80294 61 aa1.96□□□□□ -2.1
MCF2-201ENST00000338585 A6NED7 52 aa1.96□□□□□ -2.1
MCF2-201ENST00000338585 A0A1B0GU33 70 aa1.95□□□□□ -2.1
MCF2-201ENST00000338585 PMAIP1Q13794 54 aa1.95□□□□□ -2.1
MCF2-201ENST00000338585 BRK1Q8WUW1 75 aa1.95□□□□□ -2.1
MCF2-201ENST00000338585 M0R2T5 61 aa1.94□□□□□ -2.1
MCF2-201ENST00000338585 H0YAA0 97 aa1.94□□□□□ -2.1
MCF2-201ENST00000338585 KRTAP13-4Q3LI77 160 aa1.94□□□□□ -2.1
MCF2-201ENST00000338585 SPATA8Q6RVD6 105 aa1.94□□□□□ -2.1
MCF2-201ENST00000338585 UQCR11O14957 56 aa1.93□□□□□ -2.1
MCF2-201ENST00000338585 KRTAP5-4Q6L8H1 288 aa1.93□□□□□ -2.1
MCF2-201ENST00000338585 MIR22HGQ0VDD5 57 aa1.92□□□□□ -2.1
MCF2-201ENST00000338585 CDC42SE1Q9NRR8 79 aa1.91□□□□□ -2.1
MCF2-201ENST00000338585 A0A0D9SG42 100 aa1.9□□□□□ -2.11
MCF2-201ENST00000338585 M0QZ58 72 aa1.89□□□□□ -2.11
MCF2-201ENST00000338585 MT2AP02795 61 aa1.89□□□□□ -2.11
MCF2-201ENST00000338585 R4GN34 69 aa1.89□□□□□ -2.11
MCF2-201ENST00000338585 MT1FP04733 61 aa1.88□□□□□ -2.11
MCF2-201ENST00000338585 KRTAP5-1Q6L8H4 278 aa1.88□□□□□ -2.11
MCF2-201ENST00000338585 LINC01554Q52M75 96 aa1.88□□□□□ -2.11
MCF2-201ENST00000338585 KRTAP10-10P60014 251 aa1.86□□□□□ -2.11
MCF2-201ENST00000338585 KRTAP12-2P59991 146 aa1.85□□□□□ -2.11
MCF2-201ENST00000338585 KRTAP12-1P59990 96 aa1.85□□□□□ -2.11
MCF2-201ENST00000338585 KRTAP4-4Q9BYR3 166 aa1.85□□□□□ -2.11
MCF2-201ENST00000338585 SPINT4Q6UDR6 99 aa1.84□□□□□ -2.11
MCF2-201ENST00000338585 CRIPTQ9P021 101 aa1.84□□□□□ -2.11
MCF2-201ENST00000338585 SPRR2GQ9BYE4 73 aa1.83□□□□□ -2.12
MCF2-201ENST00000338585 A6NN06 94 aa1.82□□□□□ -2.12
MCF2-201ENST00000338585 LCE1EQ5T753 118 aa1.82□□□□□ -2.12
MCF2-201ENST00000338585 K7ERS5 55 aa1.81□□□□□ -2.12
MCF2-201ENST00000338585 LUZP6Q538Z0 58 aa1.8□□□□□ -2.12
MCF2-201ENST00000338585 KRTAP15-1Q3LI76 137 aa1.79□□□□□ -2.12
MCF2-201ENST00000338585 CAMK2N1Q7Z7J9 78 aa1.79□□□□□ -2.12
MCF2-201ENST00000338585 KRTAP19-8Q3LI54 63 aa1.78□□□□□ -2.12
MCF2-201ENST00000338585 MT1BP07438 61 aa1.78□□□□□ -2.12
MCF2-201ENST00000338585 KTN1-AS1Q86SY8 53 aa1.78□□□□□ -2.12
MCF2-201ENST00000338585 USH2AO75445 5202 aa1.76□□□□□ -2.13
MCF2-201ENST00000338585 PLAC4Q8WY50 150 aa1.76□□□□□ -2.13
MCF2-201ENST00000338585 ROMO1P60602 79 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms