RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 FLGP20930 4061 aaPredicted RBP13.42□□□□□ -0.26
CTDNEP1-201ENST00000318988 COA5Q86WW8 74 aa13.42□□□□□ -0.26
CTDNEP1-201ENST00000318988 MT1HP80294 61 aa13.39□□□□□ -0.27
CTDNEP1-201ENST00000318988 M0R2T5 61 aa13.37□□□□□ -0.27
CTDNEP1-201ENST00000318988 CSAG1Q6PB30 78 aa13.31□□□□□ -0.28
CTDNEP1-201ENST00000318988 SPTSSBQ8NFR3 76 aa13.31□□□□□ -0.28
CTDNEP1-201ENST00000318988 KRTAP3-3Q9BYR6 98 aa13.29□□□□□ -0.28
CTDNEP1-201ENST00000318988 SERP1Q9Y6X1 66 aa13.24□□□□□ -0.29
CTDNEP1-201ENST00000318988 LCE2AQ5TA79 106 aaPredicted RBP13.13□□□□□ -0.31
CTDNEP1-201ENST00000318988 RPS28P62857 69 aaKnown RBP13.02□□□□□ -0.33
CTDNEP1-201ENST00000318988 KRTAP10-6P60371 365 aaPredicted RBP12.98□□□□□ -0.33
CTDNEP1-201ENST00000318988 H0YAA0 97 aa12.9□□□□□ -0.34
CTDNEP1-201ENST00000318988 LORP23490 312 aaPredicted RBP12.88□□□□□ -0.35
CTDNEP1-201ENST00000318988 ADM2Q7Z4H4 148 aa12.87□□□□□ -0.35
CTDNEP1-201ENST00000318988 SEC61GP60059 68 aa12.86□□□□□ -0.35
CTDNEP1-201ENST00000318988 SMIM26A0A096LP01 95 aa12.83□□□□□ -0.35
CTDNEP1-201ENST00000318988 KRTAP9-8Q9BYQ0 159 aa12.81□□□□□ -0.36
CTDNEP1-201ENST00000318988 MT2AP02795 61 aa12.76□□□□□ -0.37
CTDNEP1-201ENST00000318988 A0A1B0GU69 56 aa12.75□□□□□ -0.37
CTDNEP1-201ENST00000318988 LINC01558Q9Y6Z2 57 aa12.75□□□□□ -0.37
CTDNEP1-201ENST00000318988 V9GYY9 64 aa12.74□□□□□ -0.37
CTDNEP1-201ENST00000318988 KRTAP10-10P60014 251 aa12.73□□□□□ -0.37
CTDNEP1-201ENST00000318988 KRTAP3-2Q9BYR7 98 aa12.71□□□□□ -0.38
CTDNEP1-201ENST00000318988 PRR15LQ9BU68 103 aa12.7□□□□□ -0.38
CTDNEP1-201ENST00000318988 P0C880 135 aa12.68□□□□□ -0.38
CTDNEP1-201ENST00000318988 Q1T7F1 81 aa12.67□□□□□ -0.38
CTDNEP1-201ENST00000318988 MT1FP04733 61 aa12.66□□□□□ -0.38
CTDNEP1-201ENST00000318988 CRIPTQ9P021 101 aa12.55□□□□□ -0.4
CTDNEP1-201ENST00000318988 PSPHP1O15172 72 aa12.49□□□□□ -0.41
CTDNEP1-201ENST00000318988 R4GN34 69 aa12.48□□□□□ -0.41
CTDNEP1-201ENST00000318988 A0A1B0GU33 70 aa12.47□□□□□ -0.41
CTDNEP1-201ENST00000318988 M0QZ58 72 aa12.42□□□□□ -0.42
CTDNEP1-201ENST00000318988 KRTAP9-3Q9BYQ3 159 aa12.37□□□□□ -0.43
CTDNEP1-201ENST00000318988 Q5VV11 94 aa12.32□□□□□ -0.44
CTDNEP1-201ENST00000318988 SPRR2GQ9BYE4 73 aa12.31□□□□□ -0.44
CTDNEP1-201ENST00000318988 UQCR11O14957 56 aa12.28□□□□□ -0.44
CTDNEP1-201ENST00000318988 KRTAP19-1Q8IUB9 90 aa12.27□□□□□ -0.45
CTDNEP1-201ENST00000318988 SPATA8Q6RVD6 105 aa12.25□□□□□ -0.45
CTDNEP1-201ENST00000318988 KRTAP13-4Q3LI77 160 aa12.24□□□□□ -0.45
CTDNEP1-201ENST00000318988 LINC01554Q52M75 96 aa12.22□□□□□ -0.45
CTDNEP1-201ENST00000318988 KRTAP9-2Q9BYQ4 174 aa12.18□□□□□ -0.46
CTDNEP1-201ENST00000318988 A6NED7 52 aa12.16□□□□□ -0.46
CTDNEP1-201ENST00000318988 LCE2DQ5TA82 110 aaPredicted RBP12.15□□□□□ -0.46
CTDNEP1-201ENST00000318988 A0A0D9SG42 100 aa12.1□□□□□ -0.47
CTDNEP1-201ENST00000318988 MIR22HGQ0VDD5 57 aa12.1□□□□□ -0.47
CTDNEP1-201ENST00000318988 LCE2BO14633 110 aa12.08□□□□□ -0.48
CTDNEP1-201ENST00000318988 KRTAP19-8Q3LI54 63 aa12.04□□□□□ -0.48
CTDNEP1-201ENST00000318988 A8MU10 97 aa12□□□□□ -0.49
CTDNEP1-201ENST00000318988 A6NN06 94 aa11.95□□□□□ -0.5
CTDNEP1-201ENST00000318988 PLAC4Q8WY50 150 aa11.93□□□□□ -0.5
CTDNEP1-201ENST00000318988 MT1BP07438 61 aa11.88□□□□□ -0.51
CTDNEP1-201ENST00000318988 SPINT4Q6UDR6 99 aa11.86□□□□□ -0.51
CTDNEP1-201ENST00000318988 CDC42SE1Q9NRR8 79 aa11.83□□□□□ -0.52
CTDNEP1-201ENST00000318988 KRTAP12-1P59990 96 aa11.8□□□□□ -0.52
CTDNEP1-201ENST00000318988 USH2AO75445 5202 aa11.76□□□□□ -0.53
CTDNEP1-201ENST00000318988 KRTAP9-6A0A140TA67 174 aa11.76□□□□□ -0.53
CTDNEP1-201ENST00000318988 FSIP2Q5CZC0 6907 aa11.75□□□□□ -0.53
CTDNEP1-201ENST00000318988 KRTAP12-2P59991 146 aa11.74□□□□□ -0.53
CTDNEP1-201ENST00000318988 K7ERS5 55 aa11.73□□□□□ -0.53
CTDNEP1-201ENST00000318988 BRK1Q8WUW1 75 aa11.72□□□□□ -0.53
CTDNEP1-201ENST00000318988 CAMK2N1Q7Z7J9 78 aa11.67□□□□□ -0.54
CTDNEP1-201ENST00000318988 PRO0628Q9UI54 55 aa11.5□□□□□ -0.57
CTDNEP1-201ENST00000318988 PRO2289Q9P1D8 64 aa11.49□□□□□ -0.57
CTDNEP1-201ENST00000318988 KRTAP19-6Q3LI70 58 aa11.48□□□□□ -0.57
CTDNEP1-201ENST00000318988 CRCT1Q9UGL9 99 aa11.48□□□□□ -0.57
CTDNEP1-201ENST00000318988 SSPOA2VEC9 5147 aa11.43□□□□□ -0.58
CTDNEP1-201ENST00000318988 KRTAP10-5P60370 271 aa11.41□□□□□ -0.58
CTDNEP1-201ENST00000318988 MT1XP80297 61 aa11.41□□□□□ -0.58
CTDNEP1-201ENST00000318988 C10orf95Q9H7T3 257 aa11.17□□□□□ -0.62
CTDNEP1-201ENST00000318988 PMAIP1Q13794 54 aa11.09□□□□□ -0.63
CTDNEP1-201ENST00000318988 ROMO1P60602 79 aa11.08□□□□□ -0.64
CTDNEP1-201ENST00000318988 FCGBPQ9Y6R7 5405 aaPredicted RBP11.07□□□□□ -0.64
CTDNEP1-201ENST00000318988 TNP1P09430 55 aa11.01□□□□□ -0.65
CTDNEP1-201ENST00000318988 KRTAP10-7P60409 375 aaPredicted RBP10.94□□□□□ -0.66
CTDNEP1-201ENST00000318988 KRTAP25-1Q3LHN0 102 aa10.89□□□□□ -0.67
CTDNEP1-201ENST00000318988 KRTAP10-12P60413 245 aa10.84□□□□□ -0.67
CTDNEP1-201ENST00000318988 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.71□□□□□ -0.69
CTDNEP1-201ENST00000318988 KTN1-AS1Q86SY8 53 aa10.66□□□□□ -0.7
CTDNEP1-201ENST00000318988 KRTAP4-8A0A0G2JLE6 195 aa10.6□□□□□ -0.71
CTDNEP1-201ENST00000318988 KRTAP4-8Q9BYQ9 185 aa10.6□□□□□ -0.71
CTDNEP1-201ENST00000318988 MACF1Q9UPN3 7388 aaKnown RBP10.6□□□□□ -0.71
CTDNEP1-201ENST00000318988 KRTAP9-7A8MTY7 169 aa10.57□□□□□ -0.72
CTDNEP1-201ENST00000318988 LCE3AQ5TA76 89 aa10.55□□□□□ -0.72
CTDNEP1-201ENST00000318988 SVIPQ8NHG7 77 aa10.55□□□□□ -0.72
CTDNEP1-201ENST00000318988 KRTAP8-1Q8IUC2 63 aa10.52□□□□□ -0.73
CTDNEP1-201ENST00000318988 KRTAP23-1A1A580 65 aa10.5□□□□□ -0.73
CTDNEP1-201ENST00000318988 KMT2DO14686 5537 aa10.5□□□□□ -0.73
CTDNEP1-201ENST00000318988 SYNE2Q8WXH0 6885 aaKnown RBP10.45□□□□□ -0.74
CTDNEP1-201ENST00000318988 PP632Q6XCG6 107 aa10.44□□□□□ -0.74
CTDNEP1-201ENST00000318988 PRAC1Q96KF2 57 aa10.35□□□□□ -0.75
CTDNEP1-201ENST00000318988 KRTAP19-5Q3LI72 72 aa10.25□□□□□ -0.77
CTDNEP1-201ENST00000318988 KRTAP6-3Q3LI67 103 aa10.23□□□□□ -0.77
CTDNEP1-201ENST00000318988 SPRR2FQ96RM1 72 aa10.21□□□□□ -0.78
CTDNEP1-201ENST00000318988 KRTAP12-3P60328 96 aa10.17□□□□□ -0.78
CTDNEP1-201ENST00000318988 KRTAP19-7Q3SYF9 63 aa10.17□□□□□ -0.78
CTDNEP1-201ENST00000318988 KRTAP5-9P26371 169 aa10.16□□□□□ -0.78
CTDNEP1-201ENST00000318988 MT1EP04732 61 aa10.05□□□□□ -0.8
CTDNEP1-201ENST00000318988 MUC12Q9UKN1 5478 aa9.86□□□□□ -0.83
CTDNEP1-201ENST00000318988 KRTAP15-1Q3LI76 137 aa9.86□□□□□ -0.83
CTDNEP1-201ENST00000318988 NEBP20929 6669 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms