RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 FAM240AA0A1B0GVK7 77 aa7.52□□□□□ -1.21
HDDC2-201ENST00000318787 ATP5EP2Q5VTU8 51 aa7.51□□□□□ -1.21
HDDC2-201ENST00000318787 TRAV22A0A0B4J277 110 aa7.5□□□□□ -1.21
HDDC2-201ENST00000318787 FAM236AA0A1B0GUQ0 79 aa7.5□□□□□ -1.21
HDDC2-201ENST00000318787 FAM236BA0A1B0GV22 79 aa7.5□□□□□ -1.21
HDDC2-201ENST00000318787 A0A1B0GV90 55 aa7.47□□□□□ -1.21
HDDC2-201ENST00000318787 LCA10Q71F78 164 aa7.47□□□□□ -1.21
HDDC2-201ENST00000318787 CYP4F30PQ9H0H9 118 aa7.47□□□□□ -1.21
HDDC2-201ENST00000318787 A0A087WVE0 104 aa7.45□□□□□ -1.22
HDDC2-201ENST00000318787 LOC101927531A0A1B0GV80 90 aa7.45□□□□□ -1.22
HDDC2-201ENST00000318787 CSAG1Q6PB30 78 aa7.45□□□□□ -1.22
HDDC2-201ENST00000318787 H0Y9P7 68 aa7.43□□□□□ -1.22
HDDC2-201ENST00000318787 MACF1Q9UPN3 7388 aaKnown RBP7.41□□□□□ -1.22
HDDC2-201ENST00000318787 UQCRQO14949 82 aa7.41□□□□□ -1.22
HDDC2-201ENST00000318787 LINC00643Q86TS7 51 aa7.41□□□□□ -1.22
HDDC2-201ENST00000318787 KRTAP19-6Q3LI70 58 aa7.37□□□□□ -1.23
HDDC2-201ENST00000318787 ATOX1O00244 68 aa7.36□□□□□ -1.23
HDDC2-201ENST00000318787 SYNE2Q8WXH0 6885 aaKnown RBP7.35□□□□□ -1.23
HDDC2-201ENST00000318787 KRTAP5-3Q6L8H2 238 aa7.32□□□□□ -1.24
HDDC2-201ENST00000318787 LINC00208Q96KT6 92 aa7.31□□□□□ -1.24
HDDC2-201ENST00000318787 J3QR89 54 aa7.29□□□□□ -1.24
HDDC2-201ENST00000318787 MP68P56378 58 aa7.27□□□□□ -1.25
HDDC2-201ENST00000318787 KLKP1Q107X0 134 aa7.25□□□□□ -1.25
HDDC2-201ENST00000318787 NDUFC1O43677 76 aa7.24□□□□□ -1.25
HDDC2-201ENST00000318787 OCR1Q9BZK8 76 aa7.23□□□□□ -1.25
HDDC2-201ENST00000318787 Q5VV11 94 aa7.22□□□□□ -1.25
HDDC2-201ENST00000318787 SCGB1A1P11684 91 aa7.2□□□□□ -1.26
HDDC2-201ENST00000318787 SPRR2GQ9BYE4 73 aa7.2□□□□□ -1.26
HDDC2-201ENST00000318787 A8MUN3 132 aa7.19□□□□□ -1.26
HDDC2-201ENST00000318787 IMUPQ9GZP8 106 aa7.19□□□□□ -1.26
HDDC2-201ENST00000318787 MT1BP07438 61 aa7.17□□□□□ -1.26
HDDC2-201ENST00000318787 A6NN06 94 aa7.14□□□□□ -1.27
HDDC2-201ENST00000318787 KRTAP19-8Q3LI54 63 aa7.14□□□□□ -1.27
HDDC2-201ENST00000318787 KRTAP23-1A1A580 65 aa7.12□□□□□ -1.27
HDDC2-201ENST00000318787 CRIPTQ9P021 101 aa7.11□□□□□ -1.27
HDDC2-201ENST00000318787 ADM2Q7Z4H4 148 aa7.1□□□□□ -1.27
HDDC2-201ENST00000318787 H3BPC8 53 aa7.09□□□□□ -1.27
HDDC2-201ENST00000318787 KRTAP6-3Q3LI67 103 aa7.08□□□□□ -1.28
HDDC2-201ENST00000318787 H0YAA0 97 aa7.07□□□□□ -1.28
HDDC2-201ENST00000318787 MT-ATP8P03928 68 aa7.03□□□□□ -1.28
HDDC2-201ENST00000318787 K7ERU9 68 aa7.02□□□□□ -1.29
HDDC2-201ENST00000318787 DMAC1Q96GE9 116 aa7.01□□□□□ -1.29
HDDC2-201ENST00000318787 KRTAP10-5P60370 271 aa6.99□□□□□ -1.29
HDDC2-201ENST00000318787 TRAV7A0A075B6U4 112 aa6.93□□□□□ -1.3
HDDC2-201ENST00000318787 SMIM20Q8N5G0 67 aa6.93□□□□□ -1.3
HDDC2-201ENST00000318787 R4GN34 69 aa6.93□□□□□ -1.3
HDDC2-201ENST00000318787 P0C880 135 aa6.92□□□□□ -1.3
HDDC2-201ENST00000318787 C20orf197Q8N268 126 aa6.92□□□□□ -1.3
HDDC2-201ENST00000318787 NEBP20929 6669 aa6.89□□□□□ -1.31
HDDC2-201ENST00000318787 MUC12Q9UKN1 5478 aa6.88□□□□□ -1.31
HDDC2-201ENST00000318787 M0QZ58 72 aa6.88□□□□□ -1.31
HDDC2-201ENST00000318787 ACYP2P14621 99 aa6.88□□□□□ -1.31
HDDC2-201ENST00000318787 KRTAP15-1Q3LI76 137 aa6.88□□□□□ -1.31
HDDC2-201ENST00000318787 PLAC4Q8WY50 150 aa6.86□□□□□ -1.31
HDDC2-201ENST00000318787 SNURFQ9Y675 71 aa6.86□□□□□ -1.31
HDDC2-201ENST00000318787 LINC01554Q52M75 96 aa6.84□□□□□ -1.31
HDDC2-201ENST00000318787 CHKB-CPT1BH3BT56 60 aa6.82□□□□□ -1.32
HDDC2-201ENST00000318787 SPTSSBQ8NFR3 76 aa6.81□□□□□ -1.32
HDDC2-201ENST00000318787 PRO2289Q9P1D8 64 aa6.81□□□□□ -1.32
HDDC2-201ENST00000318787 MT1XP80297 61 aa6.73□□□□□ -1.33
HDDC2-201ENST00000318787 SERP2Q8N6R1 65 aa6.71□□□□□ -1.33
HDDC2-201ENST00000318787 KRTAP5-9P26371 169 aa6.7□□□□□ -1.34
HDDC2-201ENST00000318787 KMT2DO14686 5537 aa6.7□□□□□ -1.34
HDDC2-201ENST00000318787 MDN1Q9NU22 5596 aa6.67□□□□□ -1.34
HDDC2-201ENST00000318787 SPANXA2-OT1Q8N9U9 137 aa6.66□□□□□ -1.34
HDDC2-201ENST00000318787 KRTAP20-1Q3LI63 56 aa6.6□□□□□ -1.35
HDDC2-201ENST00000318787 SPRR2FQ96RM1 72 aa6.58□□□□□ -1.36
HDDC2-201ENST00000318787 KRTAP8-1Q8IUC2 63 aa6.57□□□□□ -1.36
HDDC2-201ENST00000318787 COA5Q86WW8 74 aa6.55□□□□□ -1.36
HDDC2-201ENST00000318787 COX7CP15954 63 aa6.52□□□□□ -1.37
HDDC2-201ENST00000318787 KRTAP12-2P59991 146 aa6.52□□□□□ -1.37
HDDC2-201ENST00000318787 SVIPQ8NHG7 77 aa6.51□□□□□ -1.37
HDDC2-201ENST00000318787 SPRR2EP22531 72 aa6.47□□□□□ -1.37
HDDC2-201ENST00000318787 SPRR2BP35325 72 aa6.47□□□□□ -1.37
HDDC2-201ENST00000318787 SPRR2AP35326 72 aa6.47□□□□□ -1.37
HDDC2-201ENST00000318787 KRTAP13-4Q3LI77 160 aa6.47□□□□□ -1.37
HDDC2-201ENST00000318787 KRTAP10-7P60409 375 aaPredicted RBP6.46□□□□□ -1.37
HDDC2-201ENST00000318787 SEC61GP60059 68 aa6.44□□□□□ -1.38
HDDC2-201ENST00000318787 SERP1Q9Y6X1 66 aa6.44□□□□□ -1.38
HDDC2-201ENST00000318787 CYSTM1Q9H1C7 97 aa6.43□□□□□ -1.38
HDDC2-201ENST00000318787 KRTAP2-3P0C7H8 128 aa6.41□□□□□ -1.38
HDDC2-201ENST00000318787 CAMK2N1Q7Z7J9 78 aa6.41□□□□□ -1.38
HDDC2-201ENST00000318787 KRTAP2-4Q9BYR9 128 aa6.41□□□□□ -1.38
HDDC2-201ENST00000318787 H7BZZ5 65 aa6.4□□□□□ -1.39
HDDC2-201ENST00000318787 A0A0D9SG42 100 aa6.37□□□□□ -1.39
HDDC2-201ENST00000318787 KRTAP10-12P60413 245 aa6.37□□□□□ -1.39
HDDC2-201ENST00000318787 ANAPC13Q9BS18 74 aa6.35□□□□□ -1.39
HDDC2-201ENST00000318787 LCE1AQ5T7P2 110 aa6.33□□□□□ -1.4
HDDC2-201ENST00000318787 SPATA8Q6RVD6 105 aa6.33□□□□□ -1.4
HDDC2-201ENST00000318787 A0A1B0GU33 70 aa6.3□□□□□ -1.4
HDDC2-201ENST00000318787 SPINT4Q6UDR6 99 aa6.28□□□□□ -1.4
HDDC2-201ENST00000318787 SPRR2DP22532 72 aa6.26□□□□□ -1.41
HDDC2-201ENST00000318787 A0A1B0GU69 56 aa6.24□□□□□ -1.41
HDDC2-201ENST00000318787 CCDC179H3BU77 68 aa6.21□□□□□ -1.41
HDDC2-201ENST00000318787 KRTAP2-2Q9BYT5 123 aa6.2□□□□□ -1.42
HDDC2-201ENST00000318787 KRTAP2-1Q9BYU5 128 aa6.2□□□□□ -1.42
HDDC2-201ENST00000318787 KRTAP12-1P59990 96 aa6.15□□□□□ -1.43
HDDC2-201ENST00000318787 SMIM26A0A096LP01 95 aa6.11□□□□□ -1.43
HDDC2-201ENST00000318787 A8MU10 97 aa6.1□□□□□ -1.43
HDDC2-201ENST00000318787 ATP5EP56381 51 aaPredicted RBP6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms