RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 MP68P56378 58 aa4.06□□□□□ -1.76
CNOT4-201ENST00000315544 SEC61GP60059 68 aa4.06□□□□□ -1.76
CNOT4-201ENST00000315544 MUC2Q02817 5179 aa4.05□□□□□ -1.76
CNOT4-201ENST00000315544 KTN1-AS1Q86SY8 53 aa4.04□□□□□ -1.76
CNOT4-201ENST00000315544 BRK1Q8WUW1 75 aa4.03□□□□□ -1.76
CNOT4-201ENST00000315544 LORP23490 312 aaPredicted RBP4.03□□□□□ -1.76
CNOT4-201ENST00000315544 KRTAP13-4Q3LI77 160 aa4.03□□□□□ -1.76
CNOT4-201ENST00000315544 TYMSOSQ8TAI1 123 aa4.01□□□□□ -1.77
CNOT4-201ENST00000315544 PMAIP1Q13794 54 aa4.01□□□□□ -1.77
CNOT4-201ENST00000315544 PCOTHQ58A44 107 aa4□□□□□ -1.77
CNOT4-201ENST00000315544 SPINK1P00995 79 aa4□□□□□ -1.77
CNOT4-201ENST00000315544 LINC00313P59037 77 aa4□□□□□ -1.77
CNOT4-201ENST00000315544 TPRXLQ17RH7 258 aa3.98□□□□□ -1.77
CNOT4-201ENST00000315544 SPAG11AQ6PDA7 123 aa3.98□□□□□ -1.77
CNOT4-201ENST00000315544 ADM2Q7Z4H4 148 aa3.97□□□□□ -1.77
CNOT4-201ENST00000315544 PRR15LQ9BU68 103 aa3.97□□□□□ -1.77
CNOT4-201ENST00000315544 RBM12B-AS1Q9P1G2 102 aa3.96□□□□□ -1.78
CNOT4-201ENST00000315544 ACYP2P14621 99 aa3.94□□□□□ -1.78
CNOT4-201ENST00000315544 XP32Q5T750 250 aa3.94□□□□□ -1.78
CNOT4-201ENST00000315544 SMR3BP02814 79 aaPredicted RBP3.93□□□□□ -1.78
CNOT4-201ENST00000315544 C7orf65Q6ZTY9 151 aa3.91□□□□□ -1.78
CNOT4-201ENST00000315544 LINC00304Q8N9R0 145 aa3.89□□□□□ -1.79
CNOT4-201ENST00000315544 CHKB-CPT1BH3BT56 60 aa3.89□□□□□ -1.79
CNOT4-201ENST00000315544 KRTAP4-1Q9BYQ7 146 aa3.88□□□□□ -1.79
CNOT4-201ENST00000315544 NDUFS5O43920 106 aa3.84□□□□□ -1.79
CNOT4-201ENST00000315544 RPL37P61927 97 aaKnown RBP3.83□□□□□ -1.8
CNOT4-201ENST00000315544 DMBT1Q9UGM3 2413 aaPredicted RBP3.82□□□□□ -1.8
CNOT4-201ENST00000315544 COX6B2Q6YFQ2 88 aa3.81□□□□□ -1.8
CNOT4-201ENST00000315544 KRTAP23-1A1A580 65 aa3.8□□□□□ -1.8
CNOT4-201ENST00000315544 H1FX-AS1Q4G0G2 97 aa3.79□□□□□ -1.8
CNOT4-201ENST00000315544 SPTSSBQ8NFR3 76 aa3.78□□□□□ -1.8
CNOT4-201ENST00000315544 PRAC1Q96KF2 57 aa3.76□□□□□ -1.81
CNOT4-201ENST00000315544 A6NED7 52 aa3.76□□□□□ -1.81
CNOT4-201ENST00000315544 MIR22HGQ0VDD5 57 aa3.76□□□□□ -1.81
CNOT4-201ENST00000315544 KRTAP12-1P59990 96 aa3.75□□□□□ -1.81
CNOT4-201ENST00000315544 UQCR11O14957 56 aa3.74□□□□□ -1.81
CNOT4-201ENST00000315544 KRTAP12-2P59991 146 aa3.74□□□□□ -1.81
CNOT4-201ENST00000315544 P0C880 135 aa3.73□□□□□ -1.81
CNOT4-201ENST00000315544 A0A1B0GU69 56 aa3.73□□□□□ -1.81
CNOT4-201ENST00000315544 SEC61BP60468 96 aaKnown RBP3.72□□□□□ -1.81
CNOT4-201ENST00000315544 MT1HP80294 61 aa3.72□□□□□ -1.81
CNOT4-201ENST00000315544 KRTAP15-1Q3LI76 137 aa3.71□□□□□ -1.82
CNOT4-201ENST00000315544 KRTAP25-1Q3LHN0 102 aa3.7□□□□□ -1.82
CNOT4-201ENST00000315544 RETNLBQ9BQ08 111 aa3.7□□□□□ -1.82
CNOT4-201ENST00000315544 KRTAP9-8Q9BYQ0 159 aa3.65□□□□□ -1.82
CNOT4-201ENST00000315544 SSPOA2VEC9 5147 aa3.65□□□□□ -1.83
CNOT4-201ENST00000315544 CSAG1Q6PB30 78 aa3.64□□□□□ -1.83
CNOT4-201ENST00000315544 LINC01554Q52M75 96 aa3.64□□□□□ -1.83
CNOT4-201ENST00000315544 C9orf92A6NGG3 77 aa3.63□□□□□ -1.83
CNOT4-201ENST00000315544 A0A1B0GU33 70 aa3.63□□□□□ -1.83
CNOT4-201ENST00000315544 SPRR5A0A1B0GTR4 108 aa3.6□□□□□ -1.83
CNOT4-201ENST00000315544 USH2AO75445 5202 aa3.59□□□□□ -1.84
CNOT4-201ENST00000315544 KRTAP9-2Q9BYQ4 174 aa3.58□□□□□ -1.84
CNOT4-201ENST00000315544 C10orf95Q9H7T3 257 aa3.57□□□□□ -1.84
CNOT4-201ENST00000315544 ROMO1P60602 79 aa3.55□□□□□ -1.84
CNOT4-201ENST00000315544 KRTAP9-3Q9BYQ3 159 aa3.54□□□□□ -1.84
CNOT4-201ENST00000315544 S4R3F8 94 aa3.54□□□□□ -1.84
CNOT4-201ENST00000315544 KRTAP19-1Q8IUB9 90 aa3.53□□□□□ -1.84
CNOT4-201ENST00000315544 LOC100996750A0A140TA64 210 aa3.52□□□□□ -1.85
CNOT4-201ENST00000315544 KRTAP4-6Q9BYQ5 205 aa3.52□□□□□ -1.85
CNOT4-201ENST00000315544 SPRR2GQ9BYE4 73 aa3.49□□□□□ -1.85
CNOT4-201ENST00000315544 MT2AP02795 61 aa3.45□□□□□ -1.86
CNOT4-201ENST00000315544 KRTAP9-6A0A140TA67 174 aa3.44□□□□□ -1.86
CNOT4-201ENST00000315544 KRTAP19-6Q3LI70 58 aa3.43□□□□□ -1.86
CNOT4-201ENST00000315544 M0QZ58 72 aa3.43□□□□□ -1.86
CNOT4-201ENST00000315544 MT1FP04733 61 aa3.41□□□□□ -1.86
CNOT4-201ENST00000315544 CRIPTQ9P021 101 aa3.4□□□□□ -1.87
CNOT4-201ENST00000315544 KRTAP19-8Q3LI54 63 aa3.39□□□□□ -1.87
CNOT4-201ENST00000315544 CRCT1Q9UGL9 99 aa3.35□□□□□ -1.87
CNOT4-201ENST00000315544 MT1BP07438 61 aa3.33□□□□□ -1.88
CNOT4-201ENST00000315544 KRTAP10-5P60370 271 aa3.32□□□□□ -1.88
CNOT4-201ENST00000315544 MT1XP80297 61 aa3.29□□□□□ -1.88
CNOT4-201ENST00000315544 FCGBPQ9Y6R7 5405 aaPredicted RBP3.27□□□□□ -1.89
CNOT4-201ENST00000315544 KRTAP4-8Q9BYQ9 185 aa3.25□□□□□ -1.89
CNOT4-201ENST00000315544 KRTAP5-9P26371 169 aa3.25□□□□□ -1.89
CNOT4-201ENST00000315544 KRTAP10-12P60413 245 aa3.24□□□□□ -1.89
CNOT4-201ENST00000315544 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.24□□□□□ -1.89
CNOT4-201ENST00000315544 KRTAP8-1Q8IUC2 63 aa3.2□□□□□ -1.9
CNOT4-201ENST00000315544 NDUFAF8A1L188 74 aa3.18□□□□□ -1.9
CNOT4-201ENST00000315544 A0A0D9SG42 100 aa3.16□□□□□ -1.9
CNOT4-201ENST00000315544 KRTAP6-3Q3LI67 103 aa3.16□□□□□ -1.9
CNOT4-201ENST00000315544 KRTAP4-12Q9BQ66 201 aa3.16□□□□□ -1.9
CNOT4-201ENST00000315544 KMT2DO14686 5537 aa3.16□□□□□ -1.9
CNOT4-201ENST00000315544 M0R2T5 61 aa3.14□□□□□ -1.91
CNOT4-201ENST00000315544 SPINT4Q6UDR6 99 aa3.14□□□□□ -1.91
CNOT4-201ENST00000315544 KRTAP10-7P60409 375 aaPredicted RBP3.08□□□□□ -1.92
CNOT4-201ENST00000315544 KRTAP19-4Q3LI73 84 aa3.08□□□□□ -1.92
CNOT4-201ENST00000315544 PP632Q6XCG6 107 aa3.08□□□□□ -1.92
CNOT4-201ENST00000315544 KRTAP9-6A8MVA2 160 aa3.07□□□□□ -1.92
CNOT4-201ENST00000315544 LCE3AQ5TA76 89 aa3.05□□□□□ -1.92
CNOT4-201ENST00000315544 LCE3BQ5TA77 95 aa3.05□□□□□ -1.92
CNOT4-201ENST00000315544 PLAC4Q8WY50 150 aa3.03□□□□□ -1.92
CNOT4-201ENST00000315544 FSIP2Q5CZC0 6907 aa3.03□□□□□ -1.92
CNOT4-201ENST00000315544 KRTAP9-7A8MTY7 169 aa3.03□□□□□ -1.92
CNOT4-201ENST00000315544 NEBP20929 6669 aa3.02□□□□□ -1.93
CNOT4-201ENST00000315544 KRTAP10-10P60014 251 aa3.02□□□□□ -1.93
CNOT4-201ENST00000315544 KRTAP19-7Q3SYF9 63 aa3.01□□□□□ -1.93
CNOT4-201ENST00000315544 KRTAP9-9Q9BYP9 154 aa3.01□□□□□ -1.93
CNOT4-201ENST00000315544 KRTAP9-4Q9BYQ2 154 aa3.01□□□□□ -1.93
CNOT4-201ENST00000315544 LUZP6Q538Z0 58 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms