RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 KRTAP3-1Q9BYR8 98 aa7.63□□□□□ -1.19
LSM1-201ENST00000311351 UQCRQO14949 82 aa7.62□□□□□ -1.19
LSM1-201ENST00000311351 LOC101927531A0A1B0GV80 90 aa7.59□□□□□ -1.19
LSM1-201ENST00000311351 ATOX1O00244 68 aa7.59□□□□□ -1.19
LSM1-201ENST00000311351 C5orf47Q569G3 176 aa7.59□□□□□ -1.19
LSM1-201ENST00000311351 A0A087WVE0 104 aa7.58□□□□□ -1.2
LSM1-201ENST00000311351 KRTAP19-4Q3LI73 84 aa7.58□□□□□ -1.2
LSM1-201ENST00000311351 C1orf64Q8NEQ6 169 aa7.58□□□□□ -1.2
LSM1-201ENST00000311351 CYP4F30PQ9H0H9 118 aa7.56□□□□□ -1.2
LSM1-201ENST00000311351 S4R3F8 94 aa7.56□□□□□ -1.2
LSM1-201ENST00000311351 KRTAP19-6Q3LI70 58 aa7.55□□□□□ -1.2
LSM1-201ENST00000311351 H0Y9P7 68 aa7.53□□□□□ -1.2
LSM1-201ENST00000311351 K7ERU9 68 aa7.52□□□□□ -1.21
LSM1-201ENST00000311351 LCA10Q71F78 164 aa7.52□□□□□ -1.21
LSM1-201ENST00000311351 FAM236AA0A1B0GUQ0 79 aa7.48□□□□□ -1.21
LSM1-201ENST00000311351 FAM236BA0A1B0GV22 79 aa7.48□□□□□ -1.21
LSM1-201ENST00000311351 MP68P56378 58 aa7.48□□□□□ -1.21
LSM1-201ENST00000311351 CSAG1Q6PB30 78 aa7.46□□□□□ -1.22
LSM1-201ENST00000311351 OCR1Q9BZK8 76 aa7.46□□□□□ -1.22
LSM1-201ENST00000311351 SCGB1A1P11684 91 aa7.45□□□□□ -1.22
LSM1-201ENST00000311351 IMUPQ9GZP8 106 aa7.45□□□□□ -1.22
LSM1-201ENST00000311351 MACF1Q9UPN3 7388 aaKnown RBP7.44□□□□□ -1.22
LSM1-201ENST00000311351 LINC00208Q96KT6 92 aa7.42□□□□□ -1.22
LSM1-201ENST00000311351 H3BPC8 53 aa7.4□□□□□ -1.22
LSM1-201ENST00000311351 SYNE2Q8WXH0 6885 aaKnown RBP7.38□□□□□ -1.23
LSM1-201ENST00000311351 A8MUN3 132 aa7.36□□□□□ -1.23
LSM1-201ENST00000311351 MT-ATP8P03928 68 aa7.34□□□□□ -1.23
LSM1-201ENST00000311351 MT1BP07438 61 aa7.33□□□□□ -1.24
LSM1-201ENST00000311351 SMIM20Q8N5G0 67 aa7.33□□□□□ -1.24
LSM1-201ENST00000311351 SPRR2GQ9BYE4 73 aa7.33□□□□□ -1.24
LSM1-201ENST00000311351 KLKP1Q107X0 134 aa7.32□□□□□ -1.24
LSM1-201ENST00000311351 KRTAP19-8Q3LI54 63 aa7.29□□□□□ -1.24
LSM1-201ENST00000311351 Q5VV11 94 aa7.29□□□□□ -1.24
LSM1-201ENST00000311351 NDUFC1O43677 76 aa7.27□□□□□ -1.25
LSM1-201ENST00000311351 TRAV7A0A075B6U4 112 aa7.25□□□□□ -1.25
LSM1-201ENST00000311351 A6NN06 94 aa7.22□□□□□ -1.25
LSM1-201ENST00000311351 DMAC1Q96GE9 116 aa7.17□□□□□ -1.26
LSM1-201ENST00000311351 CRIPTQ9P021 101 aa7.17□□□□□ -1.26
LSM1-201ENST00000311351 KRTAP6-3Q3LI67 103 aa7.16□□□□□ -1.26
LSM1-201ENST00000311351 H0YAA0 97 aa7.15□□□□□ -1.26
LSM1-201ENST00000311351 KRTAP10-5P60370 271 aa7.14□□□□□ -1.27
LSM1-201ENST00000311351 ADM2Q7Z4H4 148 aa7.11□□□□□ -1.27
LSM1-201ENST00000311351 SERP2Q8N6R1 65 aa7.08□□□□□ -1.28
LSM1-201ENST00000311351 ACYP2P14621 99 aa7.07□□□□□ -1.28
LSM1-201ENST00000311351 SNURFQ9Y675 71 aa7.03□□□□□ -1.28
LSM1-201ENST00000311351 C20orf197Q8N268 126 aa7.01□□□□□ -1.29
LSM1-201ENST00000311351 SPTSSBQ8NFR3 76 aa7.01□□□□□ -1.29
LSM1-201ENST00000311351 H3BS24 57 aa6.99□□□□□ -1.29
LSM1-201ENST00000311351 SPANXA2-OT1Q8N9U9 137 aa6.98□□□□□ -1.29
LSM1-201ENST00000311351 P0C880 135 aa6.97□□□□□ -1.29
LSM1-201ENST00000311351 MUC12Q9UKN1 5478 aa6.97□□□□□ -1.29
LSM1-201ENST00000311351 NEBP20929 6669 aa6.95□□□□□ -1.3
LSM1-201ENST00000311351 CHKB-CPT1BH3BT56 60 aa6.95□□□□□ -1.3
LSM1-201ENST00000311351 R4GN34 69 aa6.91□□□□□ -1.3
LSM1-201ENST00000311351 COX7CP15954 63 aa6.9□□□□□ -1.3
LSM1-201ENST00000311351 M0QZ58 72 aa6.89□□□□□ -1.31
LSM1-201ENST00000311351 MT1XP80297 61 aa6.87□□□□□ -1.31
LSM1-201ENST00000311351 PLAC4Q8WY50 150 aa6.85□□□□□ -1.31
LSM1-201ENST00000311351 KMT2DO14686 5537 aa6.85□□□□□ -1.31
LSM1-201ENST00000311351 KRTAP5-9P26371 169 aa6.84□□□□□ -1.31
LSM1-201ENST00000311351 PRO2289Q9P1D8 64 aa6.83□□□□□ -1.32
LSM1-201ENST00000311351 LINC01554Q52M75 96 aa6.8□□□□□ -1.32
LSM1-201ENST00000311351 MDN1Q9NU22 5596 aa6.79□□□□□ -1.32
LSM1-201ENST00000311351 ANAPC13Q9BS18 74 aa6.78□□□□□ -1.32
LSM1-201ENST00000311351 COA5Q86WW8 74 aa6.74□□□□□ -1.33
LSM1-201ENST00000311351 H7BZZ5 65 aa6.73□□□□□ -1.33
LSM1-201ENST00000311351 KRTAP12-2P59991 146 aa6.66□□□□□ -1.34
LSM1-201ENST00000311351 SPRR2FQ96RM1 72 aa6.66□□□□□ -1.34
LSM1-201ENST00000311351 CYSTM1Q9H1C7 97 aa6.66□□□□□ -1.34
LSM1-201ENST00000311351 SEC61GP60059 68 aa6.64□□□□□ -1.35
LSM1-201ENST00000311351 KRTAP20-1Q3LI63 56 aa6.64□□□□□ -1.35
LSM1-201ENST00000311351 KRTAP8-1Q8IUC2 63 aa6.63□□□□□ -1.35
LSM1-201ENST00000311351 SERP1Q9Y6X1 66 aa6.6□□□□□ -1.35
LSM1-201ENST00000311351 CCDC179H3BU77 68 aa6.57□□□□□ -1.36
LSM1-201ENST00000311351 SPRR2EP22531 72 aa6.57□□□□□ -1.36
LSM1-201ENST00000311351 SPRR2BP35325 72 aa6.57□□□□□ -1.36
LSM1-201ENST00000311351 SPRR2AP35326 72 aa6.57□□□□□ -1.36
LSM1-201ENST00000311351 KRTAP10-7P60409 375 aaPredicted RBP6.57□□□□□ -1.36
LSM1-201ENST00000311351 ATP5EP56381 51 aaPredicted RBP6.56□□□□□ -1.36
LSM1-201ENST00000311351 KRTAP13-4Q3LI77 160 aa6.54□□□□□ -1.36
LSM1-201ENST00000311351 KRTAP10-12P60413 245 aa6.5□□□□□ -1.37
LSM1-201ENST00000311351 LCE1AQ5T7P2 110 aa6.48□□□□□ -1.37
LSM1-201ENST00000311351 A0A1B0GU33 70 aa6.44□□□□□ -1.38
LSM1-201ENST00000311351 KRTAP2-3P0C7H8 128 aa6.44□□□□□ -1.38
LSM1-201ENST00000311351 KRTAP2-4Q9BYR9 128 aa6.44□□□□□ -1.38
LSM1-201ENST00000311351 A0A1B0GU69 56 aa6.43□□□□□ -1.38
LSM1-201ENST00000311351 TMEM258P61165 79 aa6.42□□□□□ -1.38
LSM1-201ENST00000311351 CAMK2N1Q7Z7J9 78 aa6.37□□□□□ -1.39
LSM1-201ENST00000311351 PRR15LQ9BU68 103 aa6.36□□□□□ -1.39
LSM1-201ENST00000311351 A0A0D9SG42 100 aa6.34□□□□□ -1.39
LSM1-201ENST00000311351 SPRR2DP22532 72 aa6.34□□□□□ -1.39
LSM1-201ENST00000311351 SPATA8Q6RVD6 105 aa6.34□□□□□ -1.39
LSM1-201ENST00000311351 SMIM26A0A096LP01 95 aa6.3□□□□□ -1.4
LSM1-201ENST00000311351 SPINT4Q6UDR6 99 aa6.26□□□□□ -1.41
LSM1-201ENST00000311351 LINC01558Q9Y6Z2 57 aa6.25□□□□□ -1.41
LSM1-201ENST00000311351 KRTAP2-2Q9BYT5 123 aa6.24□□□□□ -1.41
LSM1-201ENST00000311351 KRTAP2-1Q9BYU5 128 aa6.24□□□□□ -1.41
LSM1-201ENST00000311351 KRTAP12-1P59990 96 aa6.2□□□□□ -1.42
LSM1-201ENST00000311351 KRTAP19-7Q3SYF9 63 aa6.14□□□□□ -1.43
LSM1-201ENST00000311351 A8MU10 97 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms