RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 S4R3F8 94 aa9.28□□□□□ -0.92
PDLIM3-202ENST00000284770 SMIM26A0A096LP01 95 aa9.27□□□□□ -0.93
PDLIM3-202ENST00000284770 FAT4Q6V0I7 4981 aa9.26□□□□□ -0.93
PDLIM3-202ENST00000284770 FLGP20930 4061 aaPredicted RBP9.25□□□□□ -0.93
PDLIM3-202ENST00000284770 LCA10Q71F78 164 aa9.24□□□□□ -0.93
PDLIM3-202ENST00000284770 KRTAP3-3Q9BYR6 98 aa9.23□□□□□ -0.93
PDLIM3-202ENST00000284770 MT1HP80294 61 aa9.22□□□□□ -0.93
PDLIM3-202ENST00000284770 SPTSSBQ8NFR3 76 aa9.17□□□□□ -0.94
PDLIM3-202ENST00000284770 Q1T7F1 81 aa9.14□□□□□ -0.95
PDLIM3-202ENST00000284770 CSAG1Q6PB30 78 aa9.12□□□□□ -0.95
PDLIM3-202ENST00000284770 M0R2T5 61 aa9.11□□□□□ -0.95
PDLIM3-202ENST00000284770 LINC01558Q9Y6Z2 57 aa9.09□□□□□ -0.95
PDLIM3-202ENST00000284770 V9GYY9 64 aa9.07□□□□□ -0.96
PDLIM3-202ENST00000284770 LCE2AQ5TA79 106 aaPredicted RBP9.07□□□□□ -0.96
PDLIM3-202ENST00000284770 PRR15LQ9BU68 103 aa8.96□□□□□ -0.97
PDLIM3-202ENST00000284770 PSPHP1O15172 72 aa8.96□□□□□ -0.98
PDLIM3-202ENST00000284770 A0A1B0GU69 56 aa8.94□□□□□ -0.98
PDLIM3-202ENST00000284770 KRTAP10-6P60371 365 aaPredicted RBP8.93□□□□□ -0.98
PDLIM3-202ENST00000284770 Q5VV11 94 aa8.9□□□□□ -0.98
PDLIM3-202ENST00000284770 H0YAA0 97 aa8.89□□□□□ -0.99
PDLIM3-202ENST00000284770 LORP23490 312 aaPredicted RBP8.89□□□□□ -0.99
PDLIM3-202ENST00000284770 SEC61GP60059 68 aa8.89□□□□□ -0.99
PDLIM3-202ENST00000284770 KRTAP3-2Q9BYR7 98 aa8.88□□□□□ -0.99
PDLIM3-202ENST00000284770 KRTAP9-8Q9BYQ0 159 aa8.85□□□□□ -0.99
PDLIM3-202ENST00000284770 ADM2Q7Z4H4 148 aa8.84□□□□□ -1
PDLIM3-202ENST00000284770 P0C880 135 aa8.79□□□□□ -1
PDLIM3-202ENST00000284770 MT2AP02795 61 aa8.78□□□□□ -1
PDLIM3-202ENST00000284770 MT1FP04733 61 aa8.73□□□□□ -1.01
PDLIM3-202ENST00000284770 A0A1B0GU33 70 aa8.71□□□□□ -1.01
PDLIM3-202ENST00000284770 KRTAP10-10P60014 251 aa8.71□□□□□ -1.01
PDLIM3-202ENST00000284770 A6NED7 52 aa8.67□□□□□ -1.02
PDLIM3-202ENST00000284770 UQCR11O14957 56 aa8.67□□□□□ -1.02
PDLIM3-202ENST00000284770 CRIPTQ9P021 101 aa8.61□□□□□ -1.03
PDLIM3-202ENST00000284770 KRTAP13-4Q3LI77 160 aa8.6□□□□□ -1.03
PDLIM3-202ENST00000284770 SPATA8Q6RVD6 105 aa8.58□□□□□ -1.04
PDLIM3-202ENST00000284770 MIR22HGQ0VDD5 57 aa8.56□□□□□ -1.04
PDLIM3-202ENST00000284770 KRTAP9-3Q9BYQ3 159 aa8.55□□□□□ -1.04
PDLIM3-202ENST00000284770 R4GN34 69 aa8.55□□□□□ -1.04
PDLIM3-202ENST00000284770 M0QZ58 72 aa8.53□□□□□ -1.04
PDLIM3-202ENST00000284770 CDC42SE1Q9NRR8 79 aa8.53□□□□□ -1.04
PDLIM3-202ENST00000284770 A8MU10 97 aa8.52□□□□□ -1.05
PDLIM3-202ENST00000284770 BRK1Q8WUW1 75 aa8.51□□□□□ -1.05
PDLIM3-202ENST00000284770 SPRR2GQ9BYE4 73 aa8.49□□□□□ -1.05
PDLIM3-202ENST00000284770 KRTAP19-1Q8IUB9 90 aa8.48□□□□□ -1.05
PDLIM3-202ENST00000284770 A0A0D9SG42 100 aa8.38□□□□□ -1.07
PDLIM3-202ENST00000284770 LINC01554Q52M75 96 aa8.35□□□□□ -1.07
PDLIM3-202ENST00000284770 LCE2DQ5TA82 110 aaPredicted RBP8.35□□□□□ -1.07
PDLIM3-202ENST00000284770 LCE2BO14633 110 aa8.34□□□□□ -1.07
PDLIM3-202ENST00000284770 KRTAP19-8Q3LI54 63 aa8.3□□□□□ -1.08
PDLIM3-202ENST00000284770 PRO0628Q9UI54 55 aa8.3□□□□□ -1.08
PDLIM3-202ENST00000284770 KRTAP12-1P59990 96 aa8.25□□□□□ -1.09
PDLIM3-202ENST00000284770 KRTAP12-2P59991 146 aa8.23□□□□□ -1.09
PDLIM3-202ENST00000284770 A6NN06 94 aa8.22□□□□□ -1.09
PDLIM3-202ENST00000284770 MT1BP07438 61 aa8.2□□□□□ -1.1
PDLIM3-202ENST00000284770 SPINT4Q6UDR6 99 aa8.18□□□□□ -1.1
PDLIM3-202ENST00000284770 KRTAP9-2Q9BYQ4 174 aa8.15□□□□□ -1.1
PDLIM3-202ENST00000284770 K7ERS5 55 aa8.15□□□□□ -1.11
PDLIM3-202ENST00000284770 PLAC4Q8WY50 150 aa8.15□□□□□ -1.11
PDLIM3-202ENST00000284770 USH2AO75445 5202 aa8.12□□□□□ -1.11
PDLIM3-202ENST00000284770 PMAIP1Q13794 54 aa8.05□□□□□ -1.12
PDLIM3-202ENST00000284770 CAMK2N1Q7Z7J9 78 aa7.97□□□□□ -1.13
PDLIM3-202ENST00000284770 FSIP2Q5CZC0 6907 aa7.96□□□□□ -1.14
PDLIM3-202ENST00000284770 KRTAP19-6Q3LI70 58 aa7.91□□□□□ -1.14
PDLIM3-202ENST00000284770 SSPOA2VEC9 5147 aa7.9□□□□□ -1.15
PDLIM3-202ENST00000284770 MT1XP80297 61 aa7.88□□□□□ -1.15
PDLIM3-202ENST00000284770 KRTAP10-5P60370 271 aa7.86□□□□□ -1.15
PDLIM3-202ENST00000284770 PRO2289Q9P1D8 64 aa7.85□□□□□ -1.15
PDLIM3-202ENST00000284770 ROMO1P60602 79 aa7.84□□□□□ -1.15
PDLIM3-202ENST00000284770 CRCT1Q9UGL9 99 aa7.83□□□□□ -1.16
PDLIM3-202ENST00000284770 C10orf95Q9H7T3 257 aa7.82□□□□□ -1.16
PDLIM3-202ENST00000284770 KTN1-AS1Q86SY8 53 aa7.69□□□□□ -1.18
PDLIM3-202ENST00000284770 FCGBPQ9Y6R7 5405 aaPredicted RBP7.63□□□□□ -1.19
PDLIM3-202ENST00000284770 KRTAP9-6A0A140TA67 174 aa7.61□□□□□ -1.19
PDLIM3-202ENST00000284770 KRTAP25-1Q3LHN0 102 aa7.57□□□□□ -1.2
PDLIM3-202ENST00000284770 PRAC1Q96KF2 57 aa7.56□□□□□ -1.2
PDLIM3-202ENST00000284770 TNP1P09430 55 aa7.56□□□□□ -1.2
PDLIM3-202ENST00000284770 SVIPQ8NHG7 77 aa7.56□□□□□ -1.2
PDLIM3-202ENST00000284770 KRTAP10-7P60409 375 aaPredicted RBP7.55□□□□□ -1.2
PDLIM3-202ENST00000284770 KRTAP10-12P60413 245 aa7.48□□□□□ -1.21
PDLIM3-202ENST00000284770 KRTAP23-1A1A580 65 aa7.33□□□□□ -1.24
PDLIM3-202ENST00000284770 KRTAP4-8A0A0G2JLE6 195 aa7.32□□□□□ -1.24
PDLIM3-202ENST00000284770 KRTAP4-8Q9BYQ9 185 aa7.32□□□□□ -1.24
PDLIM3-202ENST00000284770 MACF1Q9UPN3 7388 aaKnown RBP7.3□□□□□ -1.24
PDLIM3-202ENST00000284770 PP632Q6XCG6 107 aa7.29□□□□□ -1.24
PDLIM3-202ENST00000284770 KMT2DO14686 5537 aa7.29□□□□□ -1.24
PDLIM3-202ENST00000284770 LCE3AQ5TA76 89 aa7.28□□□□□ -1.24
PDLIM3-202ENST00000284770 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.25□□□□□ -1.25
PDLIM3-202ENST00000284770 KRTAP8-1Q8IUC2 63 aa7.2□□□□□ -1.26
PDLIM3-202ENST00000284770 SYNE2Q8WXH0 6885 aaKnown RBP7.08□□□□□ -1.28
PDLIM3-202ENST00000284770 KRTAP19-5Q3LI72 72 aa7.05□□□□□ -1.28
PDLIM3-202ENST00000284770 KRTAP19-7Q3SYF9 63 aa7.03□□□□□ -1.28
PDLIM3-202ENST00000284770 KRTAP5-9P26371 169 aa7.02□□□□□ -1.29
PDLIM3-202ENST00000284770 KRTAP6-3Q3LI67 103 aa7.02□□□□□ -1.29
PDLIM3-202ENST00000284770 KRTAP12-3P60328 96 aa6.99□□□□□ -1.29
PDLIM3-202ENST00000284770 SPRR2FQ96RM1 72 aa6.99□□□□□ -1.29
PDLIM3-202ENST00000284770 KRTAP9-7A8MTY7 169 aa6.94□□□□□ -1.3
PDLIM3-202ENST00000284770 MT1EP04732 61 aa6.93□□□□□ -1.3
PDLIM3-202ENST00000284770 KRTAP15-1Q3LI76 137 aa6.82□□□□□ -1.32
PDLIM3-202ENST00000284770 MUC12Q9UKN1 5478 aa6.8□□□□□ -1.32
PDLIM3-202ENST00000284770 MT1LQ93083 61 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms