RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 TPRXLQ17RH7 258 aa8.09□□□□□ -1.11
SF3B4-201ENST00000271628 MIR22HGQ0VDD5 57 aa8.08□□□□□ -1.12
SF3B4-201ENST00000271628 BIRC6Q9NR09 4857 aa8.06□□□□□ -1.12
SF3B4-201ENST00000271628 ABCA13Q86UQ4 5058 aa8.06□□□□□ -1.12
SF3B4-201ENST00000271628 HERC2O95714 4834 aa8.02□□□□□ -1.12
SF3B4-201ENST00000271628 J3QL48 77 aa8.02□□□□□ -1.13
SF3B4-201ENST00000271628 RBM12B-AS1Q9P1G2 102 aa8.01□□□□□ -1.13
SF3B4-201ENST00000271628 COX6B2Q6YFQ2 88 aa7.98□□□□□ -1.13
SF3B4-201ENST00000271628 KRTAP3-1Q9BYR8 98 aa7.96□□□□□ -1.13
SF3B4-201ENST00000271628 LRP2P98164 4655 aa7.9□□□□□ -1.15
SF3B4-201ENST00000271628 LPAP08519 4548 aa7.88□□□□□ -1.15
SF3B4-201ENST00000271628 SEC61BP60468 96 aaKnown RBP7.82□□□□□ -1.16
SF3B4-201ENST00000271628 A0A1B0GU33 70 aa7.81□□□□□ -1.16
SF3B4-201ENST00000271628 PRAC1Q96KF2 57 aa7.81□□□□□ -1.16
SF3B4-201ENST00000271628 ADM2Q7Z4H4 148 aa7.8□□□□□ -1.16
SF3B4-201ENST00000271628 H0YAA0 97 aa7.79□□□□□ -1.16
SF3B4-201ENST00000271628 H1FX-AS1Q4G0G2 97 aa7.77□□□□□ -1.17
SF3B4-201ENST00000271628 PCLOQ9Y6V0 5065 aa7.72□□□□□ -1.17
SF3B4-201ENST00000271628 S4R3F8 94 aa7.72□□□□□ -1.17
SF3B4-201ENST00000271628 KRTAP3-3Q9BYR6 98 aa7.67□□□□□ -1.18
SF3B4-201ENST00000271628 LINC01554Q52M75 96 aa7.64□□□□□ -1.19
SF3B4-201ENST00000271628 CSAG1Q6PB30 78 aa7.64□□□□□ -1.19
SF3B4-201ENST00000271628 MUC17Q685J3 4493 aa7.62□□□□□ -1.19
SF3B4-201ENST00000271628 K7ERS5 55 aa7.6□□□□□ -1.19
SF3B4-201ENST00000271628 HERC1Q15751 4861 aa7.6□□□□□ -1.19
SF3B4-201ENST00000271628 KRTAP4-1Q9BYQ7 146 aa7.55□□□□□ -1.2
SF3B4-201ENST00000271628 HMCN2Q8NDA2 5059 aa7.55□□□□□ -1.2
SF3B4-201ENST00000271628 KRTAP10-6P60371 365 aaPredicted RBP7.55□□□□□ -1.2
SF3B4-201ENST00000271628 KRTAP3-2Q9BYR7 98 aa7.48□□□□□ -1.21
SF3B4-201ENST00000271628 KRTAP25-1Q3LHN0 102 aa7.48□□□□□ -1.21
SF3B4-201ENST00000271628 KRTAP13-4Q3LI77 160 aa7.42□□□□□ -1.22
SF3B4-201ENST00000271628 MUC2Q02817 5179 aa7.4□□□□□ -1.22
SF3B4-201ENST00000271628 KRTAP19-2Q3LHN2 52 aa7.4□□□□□ -1.23
SF3B4-201ENST00000271628 ROMO1P60602 79 aa7.39□□□□□ -1.23
SF3B4-201ENST00000271628 P0C880 135 aa7.36□□□□□ -1.23
SF3B4-201ENST00000271628 A0A0D9SG42 100 aa7.35□□□□□ -1.23
SF3B4-201ENST00000271628 FLGP20930 4061 aaPredicted RBP7.27□□□□□ -1.24
SF3B4-201ENST00000271628 CRIPTQ9P021 101 aa7.25□□□□□ -1.25
SF3B4-201ENST00000271628 M0QZ58 72 aa7.24□□□□□ -1.25
SF3B4-201ENST00000271628 KRTAP12-2P59991 146 aa7.2□□□□□ -1.26
SF3B4-201ENST00000271628 RNF213Q63HN8 5207 aa7.18□□□□□ -1.26
SF3B4-201ENST00000271628 UBR4Q5T4S7 5183 aa7.18□□□□□ -1.26
SF3B4-201ENST00000271628 KRTAP12-1P59990 96 aa7.18□□□□□ -1.26
SF3B4-201ENST00000271628 R4GN34 69 aa7.15□□□□□ -1.26
SF3B4-201ENST00000271628 LCE2CQ5TA81 110 aa7.14□□□□□ -1.27
SF3B4-201ENST00000271628 SPINT4Q6UDR6 99 aa7.14□□□□□ -1.27
SF3B4-201ENST00000271628 FAT4Q6V0I7 4981 aa7.04□□□□□ -1.28
SF3B4-201ENST00000271628 LORP23490 312 aaPredicted RBP7.04□□□□□ -1.28
SF3B4-201ENST00000271628 C10orf95Q9H7T3 257 aa7.03□□□□□ -1.28
SF3B4-201ENST00000271628 M0R2T5 61 aa7□□□□□ -1.29
SF3B4-201ENST00000271628 MT1HP80294 61 aa6.99□□□□□ -1.29
SF3B4-201ENST00000271628 H3BS24 57 aa6.88□□□□□ -1.31
SF3B4-201ENST00000271628 KRTAP15-1Q3LI76 137 aa6.8□□□□□ -1.32
SF3B4-201ENST00000271628 SPRR2GQ9BYE4 73 aa6.77□□□□□ -1.33
SF3B4-201ENST00000271628 KRTAP9-8Q9BYQ0 159 aa6.77□□□□□ -1.33
SF3B4-201ENST00000271628 MT2AP02795 61 aa6.77□□□□□ -1.33
SF3B4-201ENST00000271628 KRTAP10-10P60014 251 aa6.75□□□□□ -1.33
SF3B4-201ENST00000271628 MT1FP04733 61 aa6.72□□□□□ -1.33
SF3B4-201ENST00000271628 CAMK2N1Q7Z7J9 78 aa6.72□□□□□ -1.33
SF3B4-201ENST00000271628 KRTAP19-1Q8IUB9 90 aa6.7□□□□□ -1.34
SF3B4-201ENST00000271628 PLAC4Q8WY50 150 aa6.64□□□□□ -1.35
SF3B4-201ENST00000271628 PP632Q6XCG6 107 aa6.61□□□□□ -1.35
SF3B4-201ENST00000271628 NDUFAF8A1L188 74 aa6.58□□□□□ -1.36
SF3B4-201ENST00000271628 LCE2AQ5TA79 106 aaPredicted RBP6.57□□□□□ -1.36
SF3B4-201ENST00000271628 KRTAP19-8Q3LI54 63 aa6.54□□□□□ -1.36
SF3B4-201ENST00000271628 KRTAP9-3Q9BYQ3 159 aa6.52□□□□□ -1.37
SF3B4-201ENST00000271628 TNP1P09430 55 aa6.43□□□□□ -1.38
SF3B4-201ENST00000271628 KRTAP23-1A1A580 65 aa6.43□□□□□ -1.38
SF3B4-201ENST00000271628 MT1BP07438 61 aa6.42□□□□□ -1.38
SF3B4-201ENST00000271628 A0A0A0MQY5 61 aa6.38□□□□□ -1.39
SF3B4-201ENST00000271628 LCE2BO14633 110 aa6.29□□□□□ -1.4
SF3B4-201ENST00000271628 KRTAP10-5P60370 271 aa6.27□□□□□ -1.41
SF3B4-201ENST00000271628 MT1XP80297 61 aa6.27□□□□□ -1.41
SF3B4-201ENST00000271628 LUZP6Q538Z0 58 aa6.26□□□□□ -1.41
SF3B4-201ENST00000271628 PRO2289Q9P1D8 64 aa6.24□□□□□ -1.41
SF3B4-201ENST00000271628 USH2AO75445 5202 aa6.13□□□□□ -1.43
SF3B4-201ENST00000271628 SPRR5A0A1B0GTR4 108 aa6.11□□□□□ -1.43
SF3B4-201ENST00000271628 LCE3AQ5TA76 89 aa6.07□□□□□ -1.44
SF3B4-201ENST00000271628 KRTAP10-12P60413 245 aa6.04□□□□□ -1.44
SF3B4-201ENST00000271628 KRTAP10-7P60409 375 aaPredicted RBP6.03□□□□□ -1.44
SF3B4-201ENST00000271628 KRTAP8-1Q8IUC2 63 aa5.98□□□□□ -1.45
SF3B4-201ENST00000271628 SSPOA2VEC9 5147 aa5.91□□□□□ -1.46
SF3B4-201ENST00000271628 LCE2DQ5TA82 110 aaPredicted RBP5.89□□□□□ -1.47
SF3B4-201ENST00000271628 KRTAP19-6Q3LI70 58 aa5.87□□□□□ -1.47
SF3B4-201ENST00000271628 KRTAP12-3P60328 96 aa5.85□□□□□ -1.47
SF3B4-201ENST00000271628 FSIP2Q5CZC0 6907 aa5.81□□□□□ -1.48
SF3B4-201ENST00000271628 KMT2DO14686 5537 aa5.76□□□□□ -1.49
SF3B4-201ENST00000271628 KRTAP4-8A0A0G2JLE6 195 aa5.73□□□□□ -1.49
SF3B4-201ENST00000271628 KRTAP4-8Q9BYQ9 185 aa5.73□□□□□ -1.49
SF3B4-201ENST00000271628 KRTAP19-5Q3LI72 72 aa5.71□□□□□ -1.49
SF3B4-201ENST00000271628 KRTAP19-7Q3SYF9 63 aa5.59□□□□□ -1.51
SF3B4-201ENST00000271628 FCGBPQ9Y6R7 5405 aaPredicted RBP5.59□□□□□ -1.52
SF3B4-201ENST00000271628 KRTAP9-2Q9BYQ4 174 aa5.52□□□□□ -1.53
SF3B4-201ENST00000271628 KRTAP19-4Q3LI73 84 aa5.51□□□□□ -1.53
SF3B4-201ENST00000271628 LCE3CQ5T5A8 94 aa5.48□□□□□ -1.53
SF3B4-201ENST00000271628 MT1EP04732 61 aa5.47□□□□□ -1.53
SF3B4-201ENST00000271628 INE1O15225 51 aa5.41□□□□□ -1.54
SF3B4-201ENST00000271628 MT1LQ93083 61 aa5.4□□□□□ -1.54
SF3B4-201ENST00000271628 CRCT1Q9UGL9 99 aa5.38□□□□□ -1.55
SF3B4-201ENST00000271628 KRTAP9-6A0A140TA67 174 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 154.7 ms