RNA–Protein interactions for RNA: ENST00000263066.10

LDB3-201, Transcript of LIM domain binding 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDB3, Length 3,873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-201ENST00000263066 SEC61BP60468 96 aaKnown RBP4.69□□□□□ -1.66
LDB3-201ENST00000263066 FAT3Q8TDW7 4589 aa4.66□□□□□ -1.66
LDB3-201ENST00000263066 COX6B2Q6YFQ2 88 aa4.64□□□□□ -1.67
LDB3-201ENST00000263066 TPRXLQ17RH7 258 aa4.63□□□□□ -1.67
LDB3-201ENST00000263066 EPPK1P58107 5090 aaKnown RBP4.62□□□□□ -1.67
LDB3-201ENST00000263066 KRTAP13-3Q3SY46 172 aa4.62□□□□□ -1.67
LDB3-201ENST00000263066 DYNC1H1Q14204 4646 aaKnown RBP4.6□□□□□ -1.67
LDB3-201ENST00000263066 TNXBP22105 4242 aa4.6□□□□□ -1.67
LDB3-201ENST00000263066 MYCBP2O75592 4640 aa4.59□□□□□ -1.67
LDB3-201ENST00000263066 FAT1Q14517 4588 aa4.59□□□□□ -1.67
LDB3-201ENST00000263066 KRTAP15-1Q3LI76 137 aa4.58□□□□□ -1.68
LDB3-201ENST00000263066 KRTAP3-3Q9BYR6 98 aa4.57□□□□□ -1.68
LDB3-201ENST00000263066 KRTAP3-2Q9BYR7 98 aa4.57□□□□□ -1.68
LDB3-201ENST00000263066 HSPG2P98160 4391 aa4.57□□□□□ -1.68
LDB3-201ENST00000263066 KIAA1109Q2LD37 5005 aa4.56□□□□□ -1.68
LDB3-201ENST00000263066 KRTAP13-2Q52LG2 175 aa4.55□□□□□ -1.68
LDB3-201ENST00000263066 LPAP08519 4548 aa4.54□□□□□ -1.68
LDB3-201ENST00000263066 KRTAP13-1Q8IUC0 172 aa4.54□□□□□ -1.68
LDB3-201ENST00000263066 A0A1B0GVY2 172 aa4.53□□□□□ -1.68
LDB3-201ENST00000263066 KRTAP4-5Q9BYR2 181 aa4.52□□□□□ -1.69
LDB3-201ENST00000263066 LRP1Q07954 4544 aaKnown RBP4.52□□□□□ -1.69
LDB3-201ENST00000263066 ABCA13Q86UQ4 5058 aa4.5□□□□□ -1.69
LDB3-201ENST00000263066 PLAC4Q8WY50 150 aa4.48□□□□□ -1.69
LDB3-201ENST00000263066 S4R3F8 94 aa4.48□□□□□ -1.69
LDB3-201ENST00000263066 RYR1P21817 5038 aa4.45□□□□□ -1.7
LDB3-201ENST00000263066 M0R2T5 61 aa4.45□□□□□ -1.7
LDB3-201ENST00000263066 KRTAP1-4P0C5Y4 121 aa4.44□□□□□ -1.7
LDB3-201ENST00000263066 CAMK2N1Q7Z7J9 78 aa4.42□□□□□ -1.7
LDB3-201ENST00000263066 KRTAP17-1Q9BYP8 105 aa4.38□□□□□ -1.71
LDB3-201ENST00000263066 KRTAP10-8P60410 259 aa4.35□□□□□ -1.71
LDB3-201ENST00000263066 KRTAP12-2P59991 146 aa4.32□□□□□ -1.72
LDB3-201ENST00000263066 KRTAP13-4Q3LI77 160 aa4.32□□□□□ -1.72
LDB3-201ENST00000263066 LCE2DQ5TA82 110 aaPredicted RBP4.29□□□□□ -1.72
LDB3-201ENST00000263066 KRTAP3-1Q9BYR8 98 aa4.28□□□□□ -1.72
LDB3-201ENST00000263066 PCLOQ9Y6V0 5065 aa4.27□□□□□ -1.73
LDB3-201ENST00000263066 M0QZ58 72 aa4.26□□□□□ -1.73
LDB3-201ENST00000263066 R4GN34 69 aa4.25□□□□□ -1.73
LDB3-201ENST00000263066 HERC2O95714 4834 aa4.24□□□□□ -1.73
LDB3-201ENST00000263066 XP32Q5T750 250 aa4.22□□□□□ -1.73
LDB3-201ENST00000263066 MUC2Q02817 5179 aa4.22□□□□□ -1.73
LDB3-201ENST00000263066 KRTAP10-6P60371 365 aaPredicted RBP4.21□□□□□ -1.74
LDB3-201ENST00000263066 KRTAP12-1P59990 96 aa4.2□□□□□ -1.74
LDB3-201ENST00000263066 MT1HL1P0DM35 61 aa4.2□□□□□ -1.74
LDB3-201ENST00000263066 FSIP2Q5CZC0 6907 aa4.19□□□□□ -1.74
LDB3-201ENST00000263066 KRTAP10-4P60372 401 aaPredicted RBP4.19□□□□□ -1.74
LDB3-201ENST00000263066 LRP2P98164 4655 aa4.17□□□□□ -1.74
LDB3-201ENST00000263066 HERC1Q15751 4861 aa4.14□□□□□ -1.75
LDB3-201ENST00000263066 MUC17Q685J3 4493 aa4.13□□□□□ -1.75
LDB3-201ENST00000263066 RPS29P62273 56 aaKnown RBP4.11□□□□□ -1.75
LDB3-201ENST00000263066 RNF213Q63HN8 5207 aa4.09□□□□□ -1.75
LDB3-201ENST00000263066 BIRC6Q9NR09 4857 aa4.09□□□□□ -1.75
LDB3-201ENST00000263066 KRTAP23-1A1A580 65 aa4.09□□□□□ -1.75
LDB3-201ENST00000263066 PRO2289Q9P1D8 64 aa4.07□□□□□ -1.76
LDB3-201ENST00000263066 PP632Q6XCG6 107 aa4.06□□□□□ -1.76
LDB3-201ENST00000263066 FLGP20930 4061 aaPredicted RBP4.04□□□□□ -1.76
LDB3-201ENST00000263066 LCE2CQ5TA81 110 aa4.03□□□□□ -1.76
LDB3-201ENST00000263066 UBR4Q5T4S7 5183 aa3.98□□□□□ -1.77
LDB3-201ENST00000263066 LCE2BO14633 110 aa3.97□□□□□ -1.77
LDB3-201ENST00000263066 HMCN2Q8NDA2 5059 aa3.96□□□□□ -1.78
LDB3-201ENST00000263066 KRTAP10-10P60014 251 aa3.94□□□□□ -1.78
LDB3-201ENST00000263066 TNP1P09430 55 aa3.94□□□□□ -1.78
LDB3-201ENST00000263066 FAT4Q6V0I7 4981 aa3.93□□□□□ -1.78
LDB3-201ENST00000263066 LCE2AQ5TA79 106 aaPredicted RBP3.9□□□□□ -1.79
LDB3-201ENST00000263066 INE1O15225 51 aa3.89□□□□□ -1.79
LDB3-201ENST00000263066 KRTAP4-1Q9BYQ7 146 aa3.85□□□□□ -1.79
LDB3-201ENST00000263066 OBSCNQ5VST9 7968 aa3.7□□□□□ -1.82
LDB3-201ENST00000263066 KRTAP19-2Q3LHN2 52 aa3.67□□□□□ -1.82
LDB3-201ENST00000263066 LORP23490 312 aaPredicted RBP3.66□□□□□ -1.82
LDB3-201ENST00000263066 MT1HP80294 61 aa3.59□□□□□ -1.83
LDB3-201ENST00000263066 USH2AO75445 5202 aa3.58□□□□□ -1.84
LDB3-201ENST00000263066 SPRR5A0A1B0GTR4 108 aa3.52□□□□□ -1.85
LDB3-201ENST00000263066 DSTQ03001 7570 aaKnown RBP3.49□□□□□ -1.85
LDB3-201ENST00000263066 MT1FP04733 61 aa3.47□□□□□ -1.85
LDB3-201ENST00000263066 MT2AP02795 61 aa3.47□□□□□ -1.85
LDB3-201ENST00000263066 LCE3AQ5TA76 89 aa3.45□□□□□ -1.86
LDB3-201ENST00000263066 SYNE1Q8NF91 8797 aaKnown RBP3.33□□□□□ -1.88
LDB3-201ENST00000263066 KRTAP12-3P60328 96 aa3.33□□□□□ -1.88
LDB3-201ENST00000263066 KRTAP9-8Q9BYQ0 159 aa3.31□□□□□ -1.88
LDB3-201ENST00000263066 KMT2DO14686 5537 aa3.29□□□□□ -1.88
LDB3-201ENST00000263066 KRTAP19-1Q8IUB9 90 aa3.25□□□□□ -1.89
LDB3-201ENST00000263066 SYNE2Q8WXH0 6885 aaKnown RBP3.24□□□□□ -1.89
LDB3-201ENST00000263066 CRCT1Q9UGL9 99 aa3.24□□□□□ -1.89
LDB3-201ENST00000263066 SSPOA2VEC9 5147 aa3.24□□□□□ -1.89
LDB3-201ENST00000263066 KRTAP9-2Q9BYQ4 174 aa3.23□□□□□ -1.89
LDB3-201ENST00000263066 KRTAP10-12P60413 245 aa3.21□□□□□ -1.89
LDB3-201ENST00000263066 FCGBPQ9Y6R7 5405 aaPredicted RBP3.2□□□□□ -1.9
LDB3-201ENST00000263066 SPRR2GQ9BYE4 73 aa3.19□□□□□ -1.9
LDB3-201ENST00000263066 KRTAP9-3Q9BYQ3 159 aa3.19□□□□□ -1.9
LDB3-201ENST00000263066 KRTAP8-1Q8IUC2 63 aa3.17□□□□□ -1.9
LDB3-201ENST00000263066 KRTAP4-8A0A0G2JLE6 195 aa3.14□□□□□ -1.91
LDB3-201ENST00000263066 KRTAP4-8Q9BYQ9 185 aa3.14□□□□□ -1.91
LDB3-201ENST00000263066 MT1BP07438 61 aa3.14□□□□□ -1.91
LDB3-201ENST00000263066 SPRR2FQ96RM1 72 aa3.13□□□□□ -1.91
LDB3-201ENST00000263066 KRTAP10-7P60409 375 aaPredicted RBP3.11□□□□□ -1.91
LDB3-201ENST00000263066 MACF1Q9UPN3 7388 aaKnown RBP3.09□□□□□ -1.91
LDB3-201ENST00000263066 MUC12Q9UKN1 5478 aa3.06□□□□□ -1.92
LDB3-201ENST00000263066 KRTAP10-5P60370 271 aa3.06□□□□□ -1.92
LDB3-201ENST00000263066 MT1XP80297 61 aa3.05□□□□□ -1.92
LDB3-201ENST00000263066 KRTAP19-8Q3LI54 63 aa3.03□□□□□ -1.92
LDB3-201ENST00000263066 LCE3CQ5T5A8 94 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms