RNA–Protein interactions for RNA: ENST00000243056.4

HOXC13-201, Transcript of homeobox C13, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC13, Length 2,423 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC13-201ENST00000243056 Q8N1X5 172 aa10.95□□□□□ -0.66
HOXC13-201ENST00000243056 A0A0A0MQY5 61 aa10.94□□□□□ -0.66
HOXC13-201ENST00000243056 A0A1B0GU33 70 aa10.93□□□□□ -0.66
HOXC13-201ENST00000243056 NDUFAF8A1L188 74 aa10.93□□□□□ -0.66
HOXC13-201ENST00000243056 SPINT4Q6UDR6 99 aa10.9□□□□□ -0.66
HOXC13-201ENST00000243056 KRTAP4-5Q9BYR2 181 aa10.89□□□□□ -0.67
HOXC13-201ENST00000243056 H1FX-AS1Q4G0G2 97 aa10.87□□□□□ -0.67
HOXC13-201ENST00000243056 C20orf166-AS1Q96NR2 134 aa10.86□□□□□ -0.67
HOXC13-201ENST00000243056 BIRC6Q9NR09 4857 aa10.8□□□□□ -0.68
HOXC13-201ENST00000243056 KRTAP15-1Q3LI76 137 aa10.79□□□□□ -0.68
HOXC13-201ENST00000243056 TNXBP22105 4242 aa10.78□□□□□ -0.68
HOXC13-201ENST00000243056 TPRXLQ17RH7 258 aa10.78□□□□□ -0.68
HOXC13-201ENST00000243056 ABCA13Q86UQ4 5058 aa10.78□□□□□ -0.68
HOXC13-201ENST00000243056 DMBT1Q9UGM3 2413 aaPredicted RBP10.78□□□□□ -0.68
HOXC13-201ENST00000243056 FAT3Q8TDW7 4589 aa10.77□□□□□ -0.68
HOXC13-201ENST00000243056 K7ERS5 55 aa10.75□□□□□ -0.69
HOXC13-201ENST00000243056 HERC2O95714 4834 aa10.66□□□□□ -0.7
HOXC13-201ENST00000243056 C10orf95Q9H7T3 257 aa10.63□□□□□ -0.71
HOXC13-201ENST00000243056 COX6B2Q6YFQ2 88 aa10.63□□□□□ -0.71
HOXC13-201ENST00000243056 KRTAP10-8P60410 259 aa10.61□□□□□ -0.71
HOXC13-201ENST00000243056 MT1HL1P0DM35 61 aa10.58□□□□□ -0.72
HOXC13-201ENST00000243056 KRTAP3-1Q9BYR8 98 aa10.56□□□□□ -0.72
HOXC13-201ENST00000243056 PCLOQ9Y6V0 5065 aa10.53□□□□□ -0.72
HOXC13-201ENST00000243056 RPL37P61927 97 aaKnown RBP10.47□□□□□ -0.73
HOXC13-201ENST00000243056 C9orf92A6NGG3 77 aa10.41□□□□□ -0.74
HOXC13-201ENST00000243056 RPS29P62273 56 aaKnown RBP10.41□□□□□ -0.74
HOXC13-201ENST00000243056 KRTAP13-4Q3LI77 160 aa10.38□□□□□ -0.75
HOXC13-201ENST00000243056 A0A0D9SG42 100 aa10.37□□□□□ -0.75
HOXC13-201ENST00000243056 LPAP08519 4548 aa10.33□□□□□ -0.76
HOXC13-201ENST00000243056 HERC1Q15751 4861 aa10.32□□□□□ -0.76
HOXC13-201ENST00000243056 J3QL48 77 aa10.29□□□□□ -0.76
HOXC13-201ENST00000243056 LUZP6Q538Z0 58 aa10.28□□□□□ -0.76
HOXC13-201ENST00000243056 KRTAP10-6P60371 365 aaPredicted RBP10.27□□□□□ -0.77
HOXC13-201ENST00000243056 LRP2P98164 4655 aa10.19□□□□□ -0.78
HOXC13-201ENST00000243056 S4R3F8 94 aa10.14□□□□□ -0.79
HOXC13-201ENST00000243056 KRTAP3-2Q9BYR7 98 aa10.12□□□□□ -0.79
HOXC13-201ENST00000243056 KRTAP12-2P59991 146 aa10.1□□□□□ -0.79
HOXC13-201ENST00000243056 XP32Q5T750 250 aa10.05□□□□□ -0.8
HOXC13-201ENST00000243056 KRTAP3-3Q9BYR6 98 aa10.04□□□□□ -0.8
HOXC13-201ENST00000243056 HMCN2Q8NDA2 5059 aa9.94□□□□□ -0.82
HOXC13-201ENST00000243056 KRTAP12-1P59990 96 aa9.92□□□□□ -0.82
HOXC13-201ENST00000243056 MUC2Q02817 5179 aa9.89□□□□□ -0.83
HOXC13-201ENST00000243056 PLAC4Q8WY50 150 aa9.77□□□□□ -0.84
HOXC13-201ENST00000243056 UBR4Q5T4S7 5183 aa9.73□□□□□ -0.85
HOXC13-201ENST00000243056 RNF213Q63HN8 5207 aa9.68□□□□□ -0.86
HOXC13-201ENST00000243056 KRTAP4-1Q9BYQ7 146 aa9.67□□□□□ -0.86
HOXC13-201ENST00000243056 MUC17Q685J3 4493 aa9.6□□□□□ -0.87
HOXC13-201ENST00000243056 SEC61BP60468 96 aaKnown RBP9.57□□□□□ -0.88
HOXC13-201ENST00000243056 M0QZ58 72 aa9.44□□□□□ -0.9
HOXC13-201ENST00000243056 FAT4Q6V0I7 4981 aa9.43□□□□□ -0.9
HOXC13-201ENST00000243056 KRTAP19-2Q3LHN2 52 aa9.27□□□□□ -0.92
HOXC13-201ENST00000243056 FLGP20930 4061 aaPredicted RBP9.13□□□□□ -0.95
HOXC13-201ENST00000243056 LCE2CQ5TA81 110 aa9.12□□□□□ -0.95
HOXC13-201ENST00000243056 PP632Q6XCG6 107 aa9.07□□□□□ -0.96
HOXC13-201ENST00000243056 R4GN34 69 aa9.06□□□□□ -0.96
HOXC13-201ENST00000243056 CAMK2N1Q7Z7J9 78 aa9□□□□□ -0.97
HOXC13-201ENST00000243056 PRO2289Q9P1D8 64 aa8.96□□□□□ -0.97
HOXC13-201ENST00000243056 SPRR5A0A1B0GTR4 108 aa8.96□□□□□ -0.98
HOXC13-201ENST00000243056 LORP23490 312 aaPredicted RBP8.93□□□□□ -0.98
HOXC13-201ENST00000243056 MT1HP80294 61 aa8.92□□□□□ -0.98
HOXC13-201ENST00000243056 M0R2T5 61 aa8.88□□□□□ -0.99
HOXC13-201ENST00000243056 KRTAP9-8Q9BYQ0 159 aa8.59□□□□□ -1.03
HOXC13-201ENST00000243056 INE1O15225 51 aa8.58□□□□□ -1.04
HOXC13-201ENST00000243056 LCE2AQ5TA79 106 aaPredicted RBP8.58□□□□□ -1.04
HOXC13-201ENST00000243056 MT2AP02795 61 aa8.55□□□□□ -1.04
HOXC13-201ENST00000243056 MT1FP04733 61 aa8.54□□□□□ -1.04
HOXC13-201ENST00000243056 KRTAP10-10P60014 251 aa8.5□□□□□ -1.05
HOXC13-201ENST00000243056 KRTAP23-1A1A580 65 aa8.49□□□□□ -1.05
HOXC13-201ENST00000243056 TNP1P09430 55 aa8.49□□□□□ -1.05
HOXC13-201ENST00000243056 KRTAP19-1Q8IUB9 90 aa8.34□□□□□ -1.07
HOXC13-201ENST00000243056 USH2AO75445 5202 aa8.28□□□□□ -1.08
HOXC13-201ENST00000243056 KRTAP9-3Q9BYQ3 159 aa8.25□□□□□ -1.09
HOXC13-201ENST00000243056 SPRR2GQ9BYE4 73 aa8.23□□□□□ -1.09
HOXC13-201ENST00000243056 FSIP2Q5CZC0 6907 aa8.2□□□□□ -1.1
HOXC13-201ENST00000243056 LCE2BO14633 110 aa8.13□□□□□ -1.11
HOXC13-201ENST00000243056 LCE3AQ5TA76 89 aa8.04□□□□□ -1.12
HOXC13-201ENST00000243056 MT1BP07438 61 aa8.03□□□□□ -1.12
HOXC13-201ENST00000243056 KRTAP19-8Q3LI54 63 aa7.99□□□□□ -1.13
HOXC13-201ENST00000243056 SSPOA2VEC9 5147 aa7.86□□□□□ -1.15
HOXC13-201ENST00000243056 MT1XP80297 61 aa7.77□□□□□ -1.17
HOXC13-201ENST00000243056 KRTAP8-1Q8IUC2 63 aa7.75□□□□□ -1.17
HOXC13-201ENST00000243056 KRTAP10-5P60370 271 aa7.74□□□□□ -1.17
HOXC13-201ENST00000243056 KRTAP10-12P60413 245 aa7.71□□□□□ -1.18
HOXC13-201ENST00000243056 LCE2DQ5TA82 110 aaPredicted RBP7.67□□□□□ -1.18
HOXC13-201ENST00000243056 KMT2DO14686 5537 aa7.64□□□□□ -1.19
HOXC13-201ENST00000243056 KRTAP9-2Q9BYQ4 174 aa7.62□□□□□ -1.19
HOXC13-201ENST00000243056 KRTAP12-3P60328 96 aa7.54□□□□□ -1.2
HOXC13-201ENST00000243056 FCGBPQ9Y6R7 5405 aaPredicted RBP7.53□□□□□ -1.2
HOXC13-201ENST00000243056 KRTAP10-7P60409 375 aaPredicted RBP7.53□□□□□ -1.2
HOXC13-201ENST00000243056 KRTAP19-6Q3LI70 58 aa7.46□□□□□ -1.22
HOXC13-201ENST00000243056 KRTAP4-8A0A0G2JLE6 195 aa7.35□□□□□ -1.23
HOXC13-201ENST00000243056 KRTAP4-8Q9BYQ9 185 aa7.35□□□□□ -1.23
HOXC13-201ENST00000243056 CRCT1Q9UGL9 99 aa7.29□□□□□ -1.24
HOXC13-201ENST00000243056 MACF1Q9UPN3 7388 aaKnown RBP7.29□□□□□ -1.24
HOXC13-201ENST00000243056 LCE3CQ5T5A8 94 aa7.17□□□□□ -1.26
HOXC13-201ENST00000243056 SYNE2Q8WXH0 6885 aaKnown RBP7.14□□□□□ -1.27
HOXC13-201ENST00000243056 KRTAP9-6A8MVA2 160 aa7.13□□□□□ -1.27
HOXC13-201ENST00000243056 KRTAP2-3P0C7H8 128 aa7.12□□□□□ -1.27
HOXC13-201ENST00000243056 KRTAP2-4Q9BYR9 128 aa7.12□□□□□ -1.27
HOXC13-201ENST00000243056 KRTAP2-1Q9BYU5 128 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms