RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 KRTAP11-1Q8IUC1 163 aa3.3□□□□□ -1.88
SCN1A-217ENST00000637988 CELSR3Q9NYQ7 3312 aa3.28□□□□□ -1.88
SCN1A-217ENST00000637988 REV3LO60673 3130 aa3.28□□□□□ -1.88
SCN1A-217ENST00000637988 LAMA3Q16787 3333 aa3.28□□□□□ -1.89
SCN1A-217ENST00000637988 TENM4Q6N022 2769 aa3.27□□□□□ -1.89
SCN1A-217ENST00000637988 UNC80Q8N2C7 3258 aa3.26□□□□□ -1.89
SCN1A-217ENST00000637988 RANBP2P49792 3224 aaKnown RBP3.25□□□□□ -1.89
SCN1A-217ENST00000637988 TENM3Q9P273 2699 aa3.25□□□□□ -1.89
SCN1A-217ENST00000637988 KALRNO60229 2985 aa3.24□□□□□ -1.89
SCN1A-217ENST00000637988 ASH1LQ9NR48 2969 aaKnown RBP3.24□□□□□ -1.89
SCN1A-217ENST00000637988 NF1P21359 2839 aa3.24□□□□□ -1.89
SCN1A-217ENST00000637988 TNRC18O15417 2968 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-217ENST00000637988 NBPF19A0A087WUL8 3843 aa3.23□□□□□ -1.89
SCN1A-217ENST00000637988 LAMA1P25391 3075 aa3.22□□□□□ -1.89
SCN1A-217ENST00000637988 CYSTM1Q9H1C7 97 aa3.21□□□□□ -1.9
SCN1A-217ENST00000637988 DMXL2Q8TDJ6 3036 aa3.2□□□□□ -1.9
SCN1A-217ENST00000637988 NDUFAF8A1L188 74 aa3.2□□□□□ -1.9
SCN1A-217ENST00000637988 KRTAP13-3Q3SY46 172 aa3.2□□□□□ -1.9
SCN1A-217ENST00000637988 CELSR2Q9HCU4 2923 aa3.19□□□□□ -1.9
SCN1A-217ENST00000637988 KRTAP7-1Q8IUC3 87 aa3.19□□□□□ -1.9
SCN1A-217ENST00000637988 BRCA2P51587 3418 aa3.19□□□□□ -1.9
SCN1A-217ENST00000637988 DNAH14Q0VDD8 3507 aa3.19□□□□□ -1.9
SCN1A-217ENST00000637988 NBEAQ8NFP9 2946 aa3.18□□□□□ -1.9
SCN1A-217ENST00000637988 KRTAP1-4P0C5Y4 121 aa3.18□□□□□ -1.9
SCN1A-217ENST00000637988 VCANP13611 3396 aa3.18□□□□□ -1.9
SCN1A-217ENST00000637988 COL12A1Q99715 3063 aa3.17□□□□□ -1.9
SCN1A-217ENST00000637988 CDH23Q9H251 3354 aa3.17□□□□□ -1.9
SCN1A-217ENST00000637988 COL6A3P12111 3177 aa3.16□□□□□ -1.9
SCN1A-217ENST00000637988 FREM2Q5SZK8 3169 aa3.16□□□□□ -1.9
SCN1A-217ENST00000637988 ZZEF1O43149 2961 aa3.15□□□□□ -1.9
SCN1A-217ENST00000637988 SPEGQ15772 3267 aa3.15□□□□□ -1.9
SCN1A-217ENST00000637988 NIPBLQ6KC79 2804 aaeCLIP3.14□□□□□ -1.91
SCN1A-217ENST00000637988 CELSR1Q9NYQ6 3014 aa3.14□□□□□ -1.91
SCN1A-217ENST00000637988 TACC2O95359 2948 aa3.14□□□□□ -1.91
SCN1A-217ENST00000637988 BOD1L1Q8NFC6 3051 aa3.13□□□□□ -1.91
SCN1A-217ENST00000637988 DCHS2Q6V1P9 2916 aa3.12□□□□□ -1.91
SCN1A-217ENST00000637988 A6NN06 94 aa3.12□□□□□ -1.91
SCN1A-217ENST00000637988 CFAP47Q6ZTR5 3102 aa3.11□□□□□ -1.91
SCN1A-217ENST00000637988 PDZD2O15018 2839 aa3.1□□□□□ -1.91
SCN1A-217ENST00000637988 TENM2Q9NT68 2774 aa3.1□□□□□ -1.91
SCN1A-217ENST00000637988 PKD1L1Q8TDX9 2849 aa3.09□□□□□ -1.91
SCN1A-217ENST00000637988 ATMQ13315 3056 aa3.09□□□□□ -1.91
SCN1A-217ENST00000637988 ADGRG4Q8IZF6 3080 aa3.09□□□□□ -1.92
SCN1A-217ENST00000637988 SPTBN5Q9NRC6 3674 aaKnown RBP3.08□□□□□ -1.92
SCN1A-217ENST00000637988 VWFP04275 2813 aa3.08□□□□□ -1.92
SCN1A-217ENST00000637988 ZANQ9Y493 2812 aa3.08□□□□□ -1.92
SCN1A-217ENST00000637988 TGP01266 2768 aa3.08□□□□□ -1.92
SCN1A-217ENST00000637988 SZT2Q5T011 3432 aa3.08□□□□□ -1.92
SCN1A-217ENST00000637988 H0YAA0 97 aa3.04□□□□□ -1.92
SCN1A-217ENST00000637988 ZFHX3Q15911 3703 aa3.02□□□□□ -1.93
SCN1A-217ENST00000637988 KRTAP12-2P59991 146 aa3.01□□□□□ -1.93
SCN1A-217ENST00000637988 KRTAP15-1Q3LI76 137 aa3.01□□□□□ -1.93
SCN1A-217ENST00000637988 KRTAP13-4Q3LI77 160 aa3□□□□□ -1.93
SCN1A-217ENST00000637988 EYSQ5T1H1 3165 aa2.99□□□□□ -1.93
SCN1A-217ENST00000637988 ZFHX4Q86UP3 3567 aa2.99□□□□□ -1.93
SCN1A-217ENST00000637988 MXRA5Q9NR99 2828 aa2.99□□□□□ -1.93
SCN1A-217ENST00000637988 DMXL1Q9Y485 3027 aa2.98□□□□□ -1.93
SCN1A-217ENST00000637988 FBN2P35556 2912 aa2.98□□□□□ -1.93
SCN1A-217ENST00000637988 ASPMQ8IZT6 3477 aa2.96□□□□□ -1.94
SCN1A-217ENST00000637988 HRNRQ86YZ3 2850 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-217ENST00000637988 WDFY3Q8IZQ1 3526 aa2.92□□□□□ -1.94
SCN1A-217ENST00000637988 COL7A1Q02388 2944 aa2.91□□□□□ -1.94
SCN1A-217ENST00000637988 CRCT1Q9UGL9 99 aa2.89□□□□□ -1.95
SCN1A-217ENST00000637988 MEGF8Q7Z7M0 2845 aa2.87□□□□□ -1.95
SCN1A-217ENST00000637988 KRTAP10-12P60413 245 aa2.87□□□□□ -1.95
SCN1A-217ENST00000637988 DMDP11532 3685 aa2.87□□□□□ -1.95
SCN1A-217ENST00000637988 SRRM2Q9UQ35 2752 aaKnown RBP2.86□□□□□ -1.95
SCN1A-217ENST00000637988 LOC400499M0QZD8 3231 aa2.86□□□□□ -1.95
SCN1A-217ENST00000637988 LAMA5O15230 3695 aa2.85□□□□□ -1.95
SCN1A-217ENST00000637988 FBN3Q75N90 2809 aa2.85□□□□□ -1.95
SCN1A-217ENST00000637988 KRTAP12-1P59990 96 aa2.84□□□□□ -1.95
SCN1A-217ENST00000637988 MYO15AQ9UKN7 3530 aa2.84□□□□□ -1.95
SCN1A-217ENST00000637988 SPENQ96T58 3664 aaKnown RBP2.83□□□□□ -1.96
SCN1A-217ENST00000637988 SMG1Q96Q15 3661 aaKnown RBP2.81□□□□□ -1.96
SCN1A-217ENST00000637988 ALMS1Q8TCU4 4167 aa2.77□□□□□ -1.97
SCN1A-217ENST00000637988 KRTAP8-1Q8IUC2 63 aa2.77□□□□□ -1.97
SCN1A-217ENST00000637988 DCHS1Q96JQ0 3298 aa2.77□□□□□ -1.97
SCN1A-217ENST00000637988 KRTAP10-6P60371 365 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-217ENST00000637988 INE1O15225 51 aa2.76□□□□□ -1.97
SCN1A-217ENST00000637988 TRRAPQ9Y4A5 3859 aa2.76□□□□□ -1.97
SCN1A-217ENST00000637988 RELNP78509 3460 aa2.75□□□□□ -1.97
SCN1A-217ENST00000637988 LORP23490 312 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-217ENST00000637988 MT1HL1P0DM35 61 aa2.72□□□□□ -1.97
SCN1A-217ENST00000637988 FBN1P35555 2871 aaKnown RBP2.71□□□□□ -1.97
SCN1A-217ENST00000637988 KRTAP12-3P60328 96 aa2.7□□□□□ -1.98
SCN1A-217ENST00000637988 VPS13CQ709C8 3753 aa2.69□□□□□ -1.98
SCN1A-217ENST00000637988 AKAP9Q99996 3911 aa2.68□□□□□ -1.98
SCN1A-217ENST00000637988 KRTAP3-1Q9BYR8 98 aa2.67□□□□□ -1.98
SCN1A-217ENST00000637988 CSMD1Q96PZ7 3565 aa2.67□□□□□ -1.98
SCN1A-217ENST00000637988 MUC3AQ02505 3323 aa2.67□□□□□ -1.98
SCN1A-217ENST00000637988 BSNQ9UPA5 3926 aa2.67□□□□□ -1.98
SCN1A-217ENST00000637988 KRTAP23-1A1A580 65 aa2.65□□□□□ -1.98
SCN1A-217ENST00000637988 KRTAP4-5Q9BYR2 181 aa2.65□□□□□ -1.99
SCN1A-217ENST00000637988 KRTAP10-5P60370 271 aa2.63□□□□□ -1.99
SCN1A-217ENST00000637988 DNAH1Q9P2D7 4330 aa2.62□□□□□ -1.99
SCN1A-217ENST00000637988 KRTAP10-7P60409 375 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-217ENST00000637988 OTOGQ6ZRI0 2925 aa2.62□□□□□ -1.99
SCN1A-217ENST00000637988 LCE3AQ5TA76 89 aa2.59□□□□□ -2
SCN1A-217ENST00000637988 DNAH7Q8WXX0 4024 aa2.56□□□□□ -2
SCN1A-217ENST00000637988 CSMD3Q7Z407 3707 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms