RNA–Protein interactions for RNA: ENST00000622183.1

CPNE3-213, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 156 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-213ENST00000622183 DEFB1P60022 68 aa0.81□□□□□ -2.28
CPNE3-213ENST00000622183 KRTAP2-4Q9BYR9 128 aa0.81□□□□□ -2.28
CPNE3-213ENST00000622183 KRTAP2-1Q9BYU5 128 aa0.81□□□□□ -2.28
CPNE3-213ENST00000622183 NCOR1O75376 2440 aa0.81□□□□□ -2.28
CPNE3-213ENST00000622183 MAP1BP46821 2468 aaKnown RBP0.81□□□□□ -2.28
CPNE3-213ENST00000622183 WDR87Q6ZQQ6 2873 aa0.81□□□□□ -2.28
CPNE3-213ENST00000622183 POLQO75417 2590 aa0.81□□□□□ -2.28
CPNE3-213ENST00000622183 KMT2AQ03164 3969 aa0.81□□□□□ -2.28
CPNE3-213ENST00000622183 CSMD3Q7Z407 3707 aa0.8□□□□□ -2.28
CPNE3-213ENST00000622183 COL6A3P12111 3177 aa0.8□□□□□ -2.28
CPNE3-213ENST00000622183 MUC16Q8WXI7 14507 aa0.79□□□□□ -2.28
CPNE3-213ENST00000622183 LYSTQ99698 3801 aa0.79□□□□□ -2.28
CPNE3-213ENST00000622183 DEFB124Q8NES8 71 aa0.79□□□□□ -2.28
CPNE3-213ENST00000622183 DNAH8Q96JB1 4490 aa0.79□□□□□ -2.28
CPNE3-213ENST00000622183 CEP250Q9BV73 2442 aa0.79□□□□□ -2.28
CPNE3-213ENST00000622183 DNAH7Q8WXX0 4024 aa0.79□□□□□ -2.28
CPNE3-213ENST00000622183 NBEAQ8NFP9 2946 aa0.78□□□□□ -2.28
CPNE3-213ENST00000622183 CRYBG3Q68DQ2 2970 aa0.78□□□□□ -2.28
CPNE3-213ENST00000622183 BSNQ9UPA5 3926 aa0.78□□□□□ -2.28
CPNE3-213ENST00000622183 DNAH3Q8TD57 4116 aa0.78□□□□□ -2.28
CPNE3-213ENST00000622183 DYNC2H1Q8NCM8 4307 aaKnown RBP0.78□□□□□ -2.28
CPNE3-213ENST00000622183 CREBBPQ92793 2442 aa0.78□□□□□ -2.28
CPNE3-213ENST00000622183 TENM4Q6N022 2769 aa0.78□□□□□ -2.29
CPNE3-213ENST00000622183 AKAP13Q12802 2813 aa0.78□□□□□ -2.29
CPNE3-213ENST00000622183 ZFHX4Q86UP3 3567 aa0.77□□□□□ -2.29
CPNE3-213ENST00000622183 PTPN13Q12923 2485 aa0.77□□□□□ -2.29
CPNE3-213ENST00000622183 CHD9Q3L8U1 2897 aa0.77□□□□□ -2.29
CPNE3-213ENST00000622183 CEP350Q5VT06 3117 aa0.77□□□□□ -2.29
CPNE3-213ENST00000622183 PDZD2O15018 2839 aa0.76□□□□□ -2.29
CPNE3-213ENST00000622183 TENM3Q9P273 2699 aa0.76□□□□□ -2.29
CPNE3-213ENST00000622183 TNP1P09430 55 aa0.76□□□□□ -2.29
CPNE3-213ENST00000622183 ITPR3Q14573 2671 aa0.76□□□□□ -2.29
CPNE3-213ENST00000622183 PKHD1L1Q86WI1 4243 aa0.76□□□□□ -2.29
CPNE3-213ENST00000622183 DMBT1Q9UGM3 2413 aaPredicted RBP0.76□□□□□ -2.29
CPNE3-213ENST00000622183 SPENQ96T58 3664 aaKnown RBP0.76□□□□□ -2.29
CPNE3-213ENST00000622183 RANBP2P49792 3224 aaKnown RBP0.76□□□□□ -2.29
CPNE3-213ENST00000622183 HECTD1Q9ULT8 2610 aa0.75□□□□□ -2.29
CPNE3-213ENST00000622183 USP9YO00507 2555 aaPredicted RBP0.75□□□□□ -2.29
CPNE3-213ENST00000622183 RELNP78509 3460 aa0.75□□□□□ -2.29
CPNE3-213ENST00000622183 C9orf92A6NGG3 77 aa0.75□□□□□ -2.29
CPNE3-213ENST00000622183 USP24Q9UPU5 2620 aa0.75□□□□□ -2.29
CPNE3-213ENST00000622183 PIEZO1Q92508 2521 aa0.75□□□□□ -2.29
CPNE3-213ENST00000622183 TNXBP22105 4242 aa0.75□□□□□ -2.29
CPNE3-213ENST00000622183 FLGP20930 4061 aaPredicted RBP0.74□□□□□ -2.29
CPNE3-213ENST00000622183 ATRQ13535 2644 aa0.74□□□□□ -2.29
CPNE3-213ENST00000622183 ANK2Q01484 3957 aa0.74□□□□□ -2.29
CPNE3-213ENST00000622183 DNAH10Q8IVF4 4471 aa0.74□□□□□ -2.29
CPNE3-213ENST00000622183 Q9Y3F1 56 aa0.74□□□□□ -2.29
CPNE3-213ENST00000622183 FAT2Q9NYQ8 4349 aa0.74□□□□□ -2.29
CPNE3-213ENST00000622183 DNAH2Q9P225 4427 aa0.74□□□□□ -2.29
CPNE3-213ENST00000622183 FRYLO94915 3013 aa0.74□□□□□ -2.29
CPNE3-213ENST00000622183 FRYQ5TBA9 3013 aa0.74□□□□□ -2.29
CPNE3-213ENST00000622183 ANK3Q12955 4377 aaKnown RBP0.74□□□□□ -2.29
CPNE3-213ENST00000622183 NCOR2Q9Y618 2525 aa0.74□□□□□ -2.29
CPNE3-213ENST00000622183 HIVEP3Q5T1R4 2406 aa0.74□□□□□ -2.29
CPNE3-213ENST00000622183 NBASA2RRP1 2371 aa0.74□□□□□ -2.29
CPNE3-213ENST00000622183 NF1P21359 2839 aa0.73□□□□□ -2.29
CPNE3-213ENST00000622183 H3BNG1 76 aa0.73□□□□□ -2.29
CPNE3-213ENST00000622183 DEFB135Q30KP9 77 aa0.73□□□□□ -2.29
CPNE3-213ENST00000622183 SMR3AQ99954 134 aa0.73□□□□□ -2.29
CPNE3-213ENST00000622183 EPG5Q9HCE0 2579 aa0.73□□□□□ -2.29
CPNE3-213ENST00000622183 LRBAP50851 2863 aa0.73□□□□□ -2.29
CPNE3-213ENST00000622183 CACNA1AO00555 2505 aa0.73□□□□□ -2.29
CPNE3-213ENST00000622183 APCP25054 2843 aa0.73□□□□□ -2.29
CPNE3-213ENST00000622183 ITPR1Q14643 2758 aa0.73□□□□□ -2.29
CPNE3-213ENST00000622183 MAP1AP78559 2803 aaPredicted RBP0.72□□□□□ -2.29
CPNE3-213ENST00000622183 LRRK2Q5S007 2527 aa0.72□□□□□ -2.29
CPNE3-213ENST00000622183 CFAP54Q96N23 3096 aa0.72□□□□□ -2.29
CPNE3-213ENST00000622183 DEFB110Q30KQ9 67 aa0.72□□□□□ -2.29
CPNE3-213ENST00000622183 KRTAP8-1Q8IUC2 63 aa0.72□□□□□ -2.29
CPNE3-213ENST00000622183 BDP1A6H8Y1 2624 aa0.72□□□□□ -2.29
CPNE3-213ENST00000622183 LAMA5O15230 3695 aa0.72□□□□□ -2.29
CPNE3-213ENST00000622183 BOD1L1Q8NFC6 3051 aa0.72□□□□□ -2.29
CPNE3-213ENST00000622183 FLNCQ14315 2725 aa0.72□□□□□ -2.29
CPNE3-213ENST00000622183 HSPG2P98160 4391 aa0.71□□□□□ -2.3
CPNE3-213ENST00000622183 HUWE1Q7Z6Z7 4374 aaKnown RBP0.71□□□□□ -2.3
CPNE3-213ENST00000622183 M0R2T5 61 aa0.71□□□□□ -2.3
CPNE3-213ENST00000622183 RPS29P62273 56 aaKnown RBP0.71□□□□□ -2.3
CPNE3-213ENST00000622183 DEFB136Q30KP8 78 aa0.71□□□□□ -2.3
CPNE3-213ENST00000622183 SPINK6Q6UWN8 80 aa0.71□□□□□ -2.3
CPNE3-213ENST00000622183 PKD1P98161 4303 aa0.7□□□□□ -2.3
CPNE3-213ENST00000622183 DMDP11532 3685 aa0.7□□□□□ -2.3
CPNE3-213ENST00000622183 CMYA5Q8N3K9 4069 aa0.7□□□□□ -2.3
CPNE3-213ENST00000622183 DNAH1Q9P2D7 4330 aa0.7□□□□□ -2.3
CPNE3-213ENST00000622183 PKHD1P08F94 4074 aa0.7□□□□□ -2.3
CPNE3-213ENST00000622183 SMG1Q96Q15 3661 aaKnown RBP0.7□□□□□ -2.3
CPNE3-213ENST00000622183 NSD1Q96L73 2696 aaPredicted RBP0.7□□□□□ -2.3
CPNE3-213ENST00000622183 HTN1P15515 57 aa0.7□□□□□ -2.3
CPNE3-213ENST00000622183 LINC01556Q5JQF7 62 aa0.7□□□□□ -2.3
CPNE3-213ENST00000622183 DEFB108BQ8NET1 73 aa0.7□□□□□ -2.3
CPNE3-213ENST00000622183 FAM186AA6NE01 2351 aa0.7□□□□□ -2.3
CPNE3-213ENST00000622183 DCHS2Q6V1P9 2916 aa0.7□□□□□ -2.3
CPNE3-213ENST00000622183 PRUNE2Q8WUY3 3088 aa0.7□□□□□ -2.3
CPNE3-213ENST00000622183 HTTP42858 3142 aa0.69□□□□□ -2.3
CPNE3-213ENST00000622183 NIPBLQ6KC79 2804 aaeCLIP0.69□□□□□ -2.3
CPNE3-213ENST00000622183 TRIOO75962 3097 aa0.69□□□□□ -2.3
CPNE3-213ENST00000622183 STAB1Q9NY15 2570 aa0.69□□□□□ -2.3
CPNE3-213ENST00000622183 DNAH6Q9C0G6 4158 aa0.69□□□□□ -2.3
CPNE3-213ENST00000622183 RIF1Q5UIP0 2472 aaKnown RBP0.69□□□□□ -2.3
CPNE3-213ENST00000622183 COL7A1Q02388 2944 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms