RNA–Protein interactions for RNA: ENST00000622183.1

CPNE3-213, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 156 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-213ENST00000622183 CHIC1Q5VXU3 224 aa21.01■□□□□ 0.95
CPNE3-213ENST00000622183 AEBP2Q6ZN18 517 aaPredicted RBP21■□□□□ 0.95
CPNE3-213ENST00000622183 PHF23Q9BUL5 403 aaPredicted RBP18.52■□□□□ 0.56
CPNE3-213ENST00000622183 SENP3Q9H4L4 574 aaPredicted RBP17.75■□□□□ 0.43
CPNE3-213ENST00000622183 PLPPR3Q6T4P5 718 aa17.28■□□□□ 0.36
CPNE3-213ENST00000622183 FOXD1Q16676 465 aa16.4■□□□□ 0.22
CPNE3-213ENST00000622183 ADRA2BP18089 450 aa16.17■□□□□ 0.18
CPNE3-213ENST00000622183 PPP6R1Q9UPN7 881 aa16.17■□□□□ 0.18
CPNE3-213ENST00000622183 PIAS4Q8N2W9 510 aaPredicted RBP15.57■□□□□ 0.08
CPNE3-213ENST00000622183 KCNA4P22459 653 aa15.5■□□□□ 0.07
CPNE3-213ENST00000622183 PPP4R3CPQ6ZMV5 832 aa15.28■□□□□ 0.04
CPNE3-213ENST00000622183 NCBP3Q53F19 620 aaKnown RBP15.03■□□□□ -0
CPNE3-213ENST00000622183 EHMT2Q96KQ7 1210 aa14.98□□□□□ -0.01
CPNE3-213ENST00000622183 MSH5O43196 834 aa14.94□□□□□ -0.02
CPNE3-213ENST00000622183 SLC4A1APQ9BWU0 796 aaKnown RBP14.85□□□□□ -0.03
CPNE3-213ENST00000622183 SCAF1Q9H7N4 1312 aaKnown RBP14.82□□□□□ -0.04
CPNE3-213ENST00000622183 NPM3O75607 178 aaKnown RBP14.81□□□□□ -0.04
CPNE3-213ENST00000622183 CNKSR2Q8WXI2 1034 aa14.75□□□□□ -0.05
CPNE3-213ENST00000622183 CSRNP3Q8WYN3 585 aa14.6□□□□□ -0.07
CPNE3-213ENST00000622183 MAPK8IP2Q13387 824 aaPredicted RBP14.52□□□□□ -0.09
CPNE3-213ENST00000622183 DNAJC5BQ9UF47 199 aa14.38□□□□□ -0.11
CPNE3-213ENST00000622183 RNF216Q9NWF9 866 aaPredicted RBP14.35□□□□□ -0.11
CPNE3-213ENST00000622183 ZBTB22O15209 634 aa14.28□□□□□ -0.12
CPNE3-213ENST00000622183 DMRT2Q9Y5R5 561 aa14.26□□□□□ -0.13
CPNE3-213ENST00000622183 HOXD11P31277 338 aaPredicted RBP14.16□□□□□ -0.14
CPNE3-213ENST00000622183 FOXD4L1Q9NU39 408 aa14.13□□□□□ -0.15
CPNE3-213ENST00000622183 SLC4A2P04920 1241 aa13.87□□□□□ -0.19
CPNE3-213ENST00000622183 MYCNP04198 464 aaPredicted RBP13.68□□□□□ -0.22
CPNE3-213ENST00000622183 ATXN8OSP0DMR3 200 aa13.61□□□□□ -0.23
CPNE3-213ENST00000622183 DCAF8L1A6NGE4 600 aa13.55□□□□□ -0.24
CPNE3-213ENST00000622183 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.47□□□□□ -0.25
CPNE3-213ENST00000622183 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.34□□□□□ -0.27
CPNE3-213ENST00000622183 HNRNPUL2Q1KMD3 747 aaKnown RBP13.34□□□□□ -0.27
CPNE3-213ENST00000622183 SAMD1Q6SPF0 538 aaPredicted RBP13.32□□□□□ -0.28
CPNE3-213ENST00000622183 U3KPZ7 1027 aaPredicted RBP13.32□□□□□ -0.28
CPNE3-213ENST00000622183 ATF5Q9Y2D1 282 aaPredicted RBP13.26□□□□□ -0.29
CPNE3-213ENST00000622183 FKBP8Q14318 412 aa13.15□□□□□ -0.3
CPNE3-213ENST00000622183 APLP2Q06481 763 aa13.07□□□□□ -0.32
CPNE3-213ENST00000622183 ZNF219Q9P2Y4 722 aaPredicted RBP13.01□□□□□ -0.33
CPNE3-213ENST00000622183 AMER1Q5JTC6 1135 aaPredicted RBP12.9□□□□□ -0.34
CPNE3-213ENST00000622183 RTN4Q9NQC3 1192 aaKnown RBP12.87□□□□□ -0.35
CPNE3-213ENST00000622183 RNF39Q9H2S5 420 aa12.86□□□□□ -0.35
CPNE3-213ENST00000622183 SPINK5Q9NQ38 1064 aaPredicted RBP12.78□□□□□ -0.36
CPNE3-213ENST00000622183 TRHP20396 242 aaPredicted RBP12.75□□□□□ -0.37
CPNE3-213ENST00000622183 C1QBPQ07021 282 aaKnown RBP12.74□□□□□ -0.37
CPNE3-213ENST00000622183 MKRN4PQ13434 485 aaPredicted RBP12.73□□□□□ -0.37
CPNE3-213ENST00000622183 POTEDQ86YR6 584 aa12.7□□□□□ -0.38
CPNE3-213ENST00000622183 CAPN15O75808 1086 aa12.69□□□□□ -0.38
CPNE3-213ENST00000622183 FBLN2P98095 1184 aa12.68□□□□□ -0.38
CPNE3-213ENST00000622183 POLA2Q14181 598 aa12.68□□□□□ -0.38
CPNE3-213ENST00000622183 SPDYE4A6NLX3 237 aa12.67□□□□□ -0.38
CPNE3-213ENST00000622183 PROM2Q8N271 834 aa12.59□□□□□ -0.39
CPNE3-213ENST00000622183 FBXO3Q9UK99 471 aa12.58□□□□□ -0.4
CPNE3-213ENST00000622183 ZBTB12Q9Y330 459 aaPredicted RBP12.55□□□□□ -0.4
CPNE3-213ENST00000622183 ABCB7O75027 752 aa12.49□□□□□ -0.41
CPNE3-213ENST00000622183 SLC24A1O60721 1099 aa12.45□□□□□ -0.42
CPNE3-213ENST00000622183 DSG3P32926 999 aa12.39□□□□□ -0.43
CPNE3-213ENST00000622183 VASPP50552 380 aaPredicted RBP12.39□□□□□ -0.43
CPNE3-213ENST00000622183 IFNLR1Q8IU57 520 aaPredicted RBP12.25□□□□□ -0.45
CPNE3-213ENST00000622183 SPDYE2BA6NHP3 402 aa12.24□□□□□ -0.45
CPNE3-213ENST00000622183 SPDYE6P0CI01 402 aa12.24□□□□□ -0.45
CPNE3-213ENST00000622183 SPDYE2Q495Y8 402 aa12.24□□□□□ -0.45
CPNE3-213ENST00000622183 ZNF692Q9BU19 519 aaPredicted RBP12.24□□□□□ -0.45
CPNE3-213ENST00000622183 OSCARQ8IYS5 282 aa12.23□□□□□ -0.45
CPNE3-213ENST00000622183 SSUH2Q9Y2M2 353 aa12.21□□□□□ -0.45
CPNE3-213ENST00000622183 STAG3Q9UJ98 1225 aa12.13□□□□□ -0.47
CPNE3-213ENST00000622183 CACNB1Q02641 598 aaPredicted RBP12.12□□□□□ -0.47
CPNE3-213ENST00000622183 PABPN1Q86U42 306 aaKnown RBP eCLIP12.1□□□□□ -0.47
CPNE3-213ENST00000622183 PKD2Q13563 968 aa12.04□□□□□ -0.48
CPNE3-213ENST00000622183 KLHL34Q8N239 644 aa12.03□□□□□ -0.48
CPNE3-213ENST00000622183 SPOCK2Q92563 424 aa12.02□□□□□ -0.49
CPNE3-213ENST00000622183 PLCD3Q8N3E9 789 aa11.99□□□□□ -0.49
CPNE3-213ENST00000622183 MIER1Q8N108 512 aa11.94□□□□□ -0.5
CPNE3-213ENST00000622183 DCAF8L2P0C7V8 631 aa11.92□□□□□ -0.5
CPNE3-213ENST00000622183 PLCB2Q00722 1185 aa11.91□□□□□ -0.5
CPNE3-213ENST00000622183 PLEKHG5O94827 1062 aa11.86□□□□□ -0.51
CPNE3-213ENST00000622183 ECM2O94769 699 aaPredicted RBP11.85□□□□□ -0.51
CPNE3-213ENST00000622183 ZBTB47Q9UFB7 747 aaPredicted RBP11.85□□□□□ -0.51
CPNE3-213ENST00000622183 RBM42Q9BTD8 480 aaKnown RBP11.81□□□□□ -0.52
CPNE3-213ENST00000622183 AKT1S1Q96B36 256 aa11.77□□□□□ -0.53
CPNE3-213ENST00000622183 SPDYE1Q8NFV5 336 aaPredicted RBP11.75□□□□□ -0.53
CPNE3-213ENST00000622183 RGL2O15211 777 aa11.73□□□□□ -0.53
CPNE3-213ENST00000622183 CIZ1Q9ULV3 898 aaPredicted RBP11.72□□□□□ -0.53
CPNE3-213ENST00000622183 BBXQ8WY36 941 aaPredicted RBP11.71□□□□□ -0.53
CPNE3-213ENST00000622183 TRIM41Q8WV44 630 aa11.69□□□□□ -0.54
CPNE3-213ENST00000622183 NPM1P06748 294 aaKnown RBP eCLIP11.68□□□□□ -0.54
CPNE3-213ENST00000622183 HAP1P54257 671 aaPredicted RBP11.68□□□□□ -0.54
CPNE3-213ENST00000622183 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.67□□□□□ -0.54
CPNE3-213ENST00000622183 REM2Q8IYK8 340 aaPredicted RBP11.65□□□□□ -0.54
CPNE3-213ENST00000622183 NUBP1P53384 320 aa11.62□□□□□ -0.55
CPNE3-213ENST00000622183 GSE1Q14687 1217 aa11.62□□□□□ -0.55
CPNE3-213ENST00000622183 CLEC11AQ9Y240 323 aa11.62□□□□□ -0.55
CPNE3-213ENST00000622183 PRR29P0C7W0 189 aa11.61□□□□□ -0.55
CPNE3-213ENST00000622183 CREBZFQ9NS37 354 aa11.6□□□□□ -0.55
CPNE3-213ENST00000622183 VSIG10Q8N0Z9 540 aa11.58□□□□□ -0.56
CPNE3-213ENST00000622183 MNX1P50219 401 aaPredicted RBP11.56□□□□□ -0.56
CPNE3-213ENST00000622183 PAXIP1Q6ZW49 1069 aaPredicted RBP11.56□□□□□ -0.56
CPNE3-213ENST00000622183 CHGAP10645 457 aaKnown RBP11.55□□□□□ -0.56
CPNE3-213ENST00000622183 DCAF8Q5TAQ9 597 aa11.52□□□□□ -0.57
CPNE3-213ENST00000622183 RNF25Q96BH1 459 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms