RNA–Protein interactions for RNA: ENST00000621266.4

COL4A6-210, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,627 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-210ENST00000621266 LAMA1P25391 3075 aa5.49□□□□□ -1.53
COL4A6-210ENST00000621266 HIVEP1P15822 2718 aa5.49□□□□□ -1.53
COL4A6-210ENST00000621266 COL12A1Q99715 3063 aa5.48□□□□□ -1.53
COL4A6-210ENST00000621266 ASPMQ8IZT6 3477 aa5.47□□□□□ -1.53
COL4A6-210ENST00000621266 FRYLO94915 3013 aa5.47□□□□□ -1.53
COL4A6-210ENST00000621266 MYO15AQ9UKN7 3530 aa5.46□□□□□ -1.54
COL4A6-210ENST00000621266 SPEGQ15772 3267 aa5.46□□□□□ -1.54
COL4A6-210ENST00000621266 KMT2BQ9UMN6 2715 aaPredicted RBP5.46□□□□□ -1.54
COL4A6-210ENST00000621266 KRTAP7-1Q8IUC3 87 aa5.45□□□□□ -1.54
COL4A6-210ENST00000621266 RPS29P62273 56 aaKnown RBP5.44□□□□□ -1.54
COL4A6-210ENST00000621266 UTP20O75691 2785 aaKnown RBP5.44□□□□□ -1.54
COL4A6-210ENST00000621266 FREM2Q5SZK8 3169 aa5.44□□□□□ -1.54
COL4A6-210ENST00000621266 P0C880 135 aa5.42□□□□□ -1.54
COL4A6-210ENST00000621266 KALRNO60229 2985 aa5.42□□□□□ -1.54
COL4A6-210ENST00000621266 KRTAP10-8P60410 259 aa5.41□□□□□ -1.54
COL4A6-210ENST00000621266 TENM4Q6N022 2769 aa5.41□□□□□ -1.54
COL4A6-210ENST00000621266 H0YAA0 97 aa5.4□□□□□ -1.54
COL4A6-210ENST00000621266 REV3LO60673 3130 aa5.4□□□□□ -1.54
COL4A6-210ENST00000621266 DMXL2Q8TDJ6 3036 aa5.4□□□□□ -1.55
COL4A6-210ENST00000621266 NIPBLQ6KC79 2804 aaeCLIP5.39□□□□□ -1.55
COL4A6-210ENST00000621266 KRTAP13-2Q52LG2 175 aa5.39□□□□□ -1.55
COL4A6-210ENST00000621266 CRYBG3Q68DQ2 2970 aa5.39□□□□□ -1.55
COL4A6-210ENST00000621266 ADGRG4Q8IZF6 3080 aa5.39□□□□□ -1.55
COL4A6-210ENST00000621266 KRTAP13-1Q8IUC0 172 aa5.39□□□□□ -1.55
COL4A6-210ENST00000621266 APCP25054 2843 aa5.39□□□□□ -1.55
COL4A6-210ENST00000621266 PP632Q6XCG6 107 aa5.38□□□□□ -1.55
COL4A6-210ENST00000621266 CFAP47Q6ZTR5 3102 aa5.37□□□□□ -1.55
COL4A6-210ENST00000621266 BOD1L1Q8NFC6 3051 aa5.37□□□□□ -1.55
COL4A6-210ENST00000621266 NBPF19A0A087WUL8 3843 aa5.37□□□□□ -1.55
COL4A6-210ENST00000621266 LRBAP50851 2863 aa5.36□□□□□ -1.55
COL4A6-210ENST00000621266 ZZEF1O43149 2961 aa5.33□□□□□ -1.56
COL4A6-210ENST00000621266 NBEAQ8NFP9 2946 aa5.33□□□□□ -1.56
COL4A6-210ENST00000621266 A0A1B0GVY2 172 aa5.32□□□□□ -1.56
COL4A6-210ENST00000621266 ASH1LQ9NR48 2969 aaKnown RBP5.29□□□□□ -1.56
COL4A6-210ENST00000621266 CELSR2Q9HCU4 2923 aa5.29□□□□□ -1.56
COL4A6-210ENST00000621266 DMXL1Q9Y485 3027 aa5.27□□□□□ -1.57
COL4A6-210ENST00000621266 ZANQ9Y493 2812 aa5.26□□□□□ -1.57
COL4A6-210ENST00000621266 WDFY3Q8IZQ1 3526 aa5.25□□□□□ -1.57
COL4A6-210ENST00000621266 DCHS2Q6V1P9 2916 aa5.24□□□□□ -1.57
COL4A6-210ENST00000621266 DMDP11532 3685 aa5.2□□□□□ -1.58
COL4A6-210ENST00000621266 HRNRQ86YZ3 2850 aaPredicted RBP5.17□□□□□ -1.58
COL4A6-210ENST00000621266 KRTAP1-4P0C5Y4 121 aa5.15□□□□□ -1.58
COL4A6-210ENST00000621266 NF1P21359 2839 aa5.13□□□□□ -1.59
COL4A6-210ENST00000621266 LAMA5O15230 3695 aa5.12□□□□□ -1.59
COL4A6-210ENST00000621266 RELNP78509 3460 aa5.11□□□□□ -1.59
COL4A6-210ENST00000621266 ZFHX4Q86UP3 3567 aa5.1□□□□□ -1.59
COL4A6-210ENST00000621266 LOC400499M0QZD8 3231 aa5.1□□□□□ -1.59
COL4A6-210ENST00000621266 XP32Q5T750 250 aa5.09□□□□□ -1.59
COL4A6-210ENST00000621266 KRTAP10-10P60014 251 aa5.09□□□□□ -1.59
COL4A6-210ENST00000621266 FBN2P35556 2912 aa5.08□□□□□ -1.6
COL4A6-210ENST00000621266 TENM3Q9P273 2699 aa5.08□□□□□ -1.6
COL4A6-210ENST00000621266 DCHS1Q96JQ0 3298 aa5.06□□□□□ -1.6
COL4A6-210ENST00000621266 KRTAP12-2P59991 146 aa5.06□□□□□ -1.6
COL4A6-210ENST00000621266 TENM1Q9UKZ4 2725 aa5.05□□□□□ -1.6
COL4A6-210ENST00000621266 TPRXLQ17RH7 258 aa5.03□□□□□ -1.6
COL4A6-210ENST00000621266 MXRA5Q9NR99 2828 aa5.03□□□□□ -1.6
COL4A6-210ENST00000621266 TENM2Q9NT68 2774 aa5.02□□□□□ -1.61
COL4A6-210ENST00000621266 ANK3Q12955 4377 aaKnown RBP4.99□□□□□ -1.61
COL4A6-210ENST00000621266 CSMD1Q96PZ7 3565 aa4.96□□□□□ -1.62
COL4A6-210ENST00000621266 PRO2289Q9P1D8 64 aa4.95□□□□□ -1.62
COL4A6-210ENST00000621266 CELSR1Q9NYQ6 3014 aa4.95□□□□□ -1.62
COL4A6-210ENST00000621266 KRTAP13-3Q3SY46 172 aa4.93□□□□□ -1.62
COL4A6-210ENST00000621266 BSNQ9UPA5 3926 aa4.91□□□□□ -1.62
COL4A6-210ENST00000621266 KRTAP13-4Q3LI77 160 aa4.91□□□□□ -1.62
COL4A6-210ENST00000621266 PKD1L1Q8TDX9 2849 aa4.89□□□□□ -1.63
COL4A6-210ENST00000621266 SPENQ96T58 3664 aaKnown RBP4.89□□□□□ -1.63
COL4A6-210ENST00000621266 KRTAP12-1P59990 96 aa4.89□□□□□ -1.63
COL4A6-210ENST00000621266 SMG1Q96Q15 3661 aaKnown RBP4.88□□□□□ -1.63
COL4A6-210ENST00000621266 PDZD2O15018 2839 aa4.87□□□□□ -1.63
COL4A6-210ENST00000621266 ZFHX3Q15911 3703 aa4.85□□□□□ -1.63
COL4A6-210ENST00000621266 TGP01266 2768 aa4.81□□□□□ -1.64
COL4A6-210ENST00000621266 KRTAP15-1Q3LI76 137 aa4.81□□□□□ -1.64
COL4A6-210ENST00000621266 MUC3AQ02505 3323 aa4.81□□□□□ -1.64
COL4A6-210ENST00000621266 VWFP04275 2813 aa4.79□□□□□ -1.64
COL4A6-210ENST00000621266 CSMD2Q7Z408 3487 aa4.78□□□□□ -1.64
COL4A6-210ENST00000621266 SVEP1Q4LDE5 3571 aa4.77□□□□□ -1.65
COL4A6-210ENST00000621266 OTOGQ6ZRI0 2925 aa4.77□□□□□ -1.65
COL4A6-210ENST00000621266 INE1O15225 51 aa4.77□□□□□ -1.65
COL4A6-210ENST00000621266 HUWE1Q7Z6Z7 4374 aaKnown RBP4.75□□□□□ -1.65
COL4A6-210ENST00000621266 ALMS1Q8TCU4 4167 aa4.73□□□□□ -1.65
COL4A6-210ENST00000621266 FBN1P35555 2871 aaKnown RBP4.72□□□□□ -1.65
COL4A6-210ENST00000621266 KRTAP4-5Q9BYR2 181 aa4.7□□□□□ -1.66
COL4A6-210ENST00000621266 KRTAP3-1Q9BYR8 98 aa4.7□□□□□ -1.66
COL4A6-210ENST00000621266 AKAP9Q99996 3911 aa4.7□□□□□ -1.66
COL4A6-210ENST00000621266 VPS13CQ709C8 3753 aa4.64□□□□□ -1.67
COL4A6-210ENST00000621266 KRTAP10-6P60371 365 aaPredicted RBP4.62□□□□□ -1.67
COL4A6-210ENST00000621266 TRRAPQ9Y4A5 3859 aa4.61□□□□□ -1.67
COL4A6-210ENST00000621266 SRRM2Q9UQ35 2752 aaKnown RBP4.6□□□□□ -1.67
COL4A6-210ENST00000621266 CRCT1Q9UGL9 99 aa4.57□□□□□ -1.68
COL4A6-210ENST00000621266 FBN3Q75N90 2809 aa4.53□□□□□ -1.68
COL4A6-210ENST00000621266 CUBNO60494 3623 aa4.5□□□□□ -1.69
COL4A6-210ENST00000621266 MT1HL1P0DM35 61 aa4.49□□□□□ -1.69
COL4A6-210ENST00000621266 ZNF469Q96JG9 3925 aaPredicted RBP4.48□□□□□ -1.69
COL4A6-210ENST00000621266 MEGF8Q7Z7M0 2845 aa4.47□□□□□ -1.69
COL4A6-210ENST00000621266 DNAH9Q9NYC9 4486 aa4.42□□□□□ -1.7
COL4A6-210ENST00000621266 COL7A1Q02388 2944 aa4.41□□□□□ -1.7
COL4A6-210ENST00000621266 KRTAP10-12P60413 245 aa4.41□□□□□ -1.7
COL4A6-210ENST00000621266 KRTAP3-2Q9BYR7 98 aa4.41□□□□□ -1.7
COL4A6-210ENST00000621266 KRTAP10-4P60372 401 aaPredicted RBP4.39□□□□□ -1.71
COL4A6-210ENST00000621266 KRTAP3-3Q9BYR6 98 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms