RNA–Protein interactions for RNA: ENST00000613122.4

CTDP1-208, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CTDP1, Length 5,866 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-208ENST00000613122 CRYBG3Q68DQ2 2970 aa10.85□□□□□ -0.67
CTDP1-208ENST00000613122 KALRNO60229 2985 aa10.85□□□□□ -0.67
CTDP1-208ENST00000613122 FRYLO94915 3013 aa10.84□□□□□ -0.67
CTDP1-208ENST00000613122 APCP25054 2843 aa10.84□□□□□ -0.67
CTDP1-208ENST00000613122 CELSR3Q9NYQ7 3312 aa10.82□□□□□ -0.68
CTDP1-208ENST00000613122 LRBAP50851 2863 aa10.81□□□□□ -0.68
CTDP1-208ENST00000613122 A0A1B0GVY2 172 aa10.78□□□□□ -0.68
CTDP1-208ENST00000613122 SZT2Q5T011 3432 aa10.77□□□□□ -0.68
CTDP1-208ENST00000613122 TPRXLQ17RH7 258 aa10.77□□□□□ -0.69
CTDP1-208ENST00000613122 DMXL2Q8TDJ6 3036 aa10.76□□□□□ -0.69
CTDP1-208ENST00000613122 A6NN06 94 aa10.75□□□□□ -0.69
CTDP1-208ENST00000613122 NIPBLQ6KC79 2804 aaeCLIP10.72□□□□□ -0.69
CTDP1-208ENST00000613122 KRTAP10-8P60410 259 aa10.71□□□□□ -0.69
CTDP1-208ENST00000613122 FREM2Q5SZK8 3169 aa10.69□□□□□ -0.7
CTDP1-208ENST00000613122 LAMA1P25391 3075 aa10.69□□□□□ -0.7
CTDP1-208ENST00000613122 EYSQ5T1H1 3165 aa10.66□□□□□ -0.7
CTDP1-208ENST00000613122 ADGRG4Q8IZF6 3080 aa10.64□□□□□ -0.71
CTDP1-208ENST00000613122 ASH1LQ9NR48 2969 aaKnown RBP10.63□□□□□ -0.71
CTDP1-208ENST00000613122 BOD1L1Q8NFC6 3051 aa10.61□□□□□ -0.71
CTDP1-208ENST00000613122 KRTAP10-10P60014 251 aa10.6□□□□□ -0.71
CTDP1-208ENST00000613122 COL6A3P12111 3177 aa10.59□□□□□ -0.71
CTDP1-208ENST00000613122 C10orf95Q9H7T3 257 aa10.57□□□□□ -0.72
CTDP1-208ENST00000613122 CELSR2Q9HCU4 2923 aa10.57□□□□□ -0.72
CTDP1-208ENST00000613122 VCANP13611 3396 aa10.56□□□□□ -0.72
CTDP1-208ENST00000613122 ZZEF1O43149 2961 aa10.55□□□□□ -0.72
CTDP1-208ENST00000613122 NBEAQ8NFP9 2946 aa10.54□□□□□ -0.72
CTDP1-208ENST00000613122 KRTAP13-3Q3SY46 172 aa10.53□□□□□ -0.72
CTDP1-208ENST00000613122 SPEGQ15772 3267 aa10.53□□□□□ -0.72
CTDP1-208ENST00000613122 PP632Q6XCG6 107 aa10.5□□□□□ -0.73
CTDP1-208ENST00000613122 DCHS2Q6V1P9 2916 aa10.48□□□□□ -0.73
CTDP1-208ENST00000613122 KRTAP16-1A8MUX0 517 aa10.48□□□□□ -0.73
CTDP1-208ENST00000613122 TNRC18O15417 2968 aaPredicted RBP10.47□□□□□ -0.73
CTDP1-208ENST00000613122 PRO2289Q9P1D8 64 aa10.45□□□□□ -0.74
CTDP1-208ENST00000613122 MYO15AQ9UKN7 3530 aa10.44□□□□□ -0.74
CTDP1-208ENST00000613122 CFAP47Q6ZTR5 3102 aa10.42□□□□□ -0.74
CTDP1-208ENST00000613122 NDUFAF8A1L188 74 aa10.4□□□□□ -0.74
CTDP1-208ENST00000613122 SPTBN5Q9NRC6 3674 aaKnown RBP10.37□□□□□ -0.75
CTDP1-208ENST00000613122 USP34Q70CQ2 3546 aa10.34□□□□□ -0.75
CTDP1-208ENST00000613122 ZANQ9Y493 2812 aa10.34□□□□□ -0.75
CTDP1-208ENST00000613122 TENM1Q9UKZ4 2725 aa10.31□□□□□ -0.76
CTDP1-208ENST00000613122 TENM2Q9NT68 2774 aa10.31□□□□□ -0.76
CTDP1-208ENST00000613122 H0YAA0 97 aa10.29□□□□□ -0.76
CTDP1-208ENST00000613122 NF1P21359 2839 aa10.27□□□□□ -0.77
CTDP1-208ENST00000613122 TENM3Q9P273 2699 aa10.24□□□□□ -0.77
CTDP1-208ENST00000613122 HRNRQ86YZ3 2850 aaPredicted RBP10.23□□□□□ -0.77
CTDP1-208ENST00000613122 P0C880 135 aa10.22□□□□□ -0.77
CTDP1-208ENST00000613122 DMXL1Q9Y485 3027 aa10.21□□□□□ -0.77
CTDP1-208ENST00000613122 FBN2P35556 2912 aa10.07□□□□□ -0.8
CTDP1-208ENST00000613122 CELSR1Q9NYQ6 3014 aa9.99□□□□□ -0.81
CTDP1-208ENST00000613122 MXRA5Q9NR99 2828 aa9.98□□□□□ -0.81
CTDP1-208ENST00000613122 WDFY3Q8IZQ1 3526 aa9.97□□□□□ -0.81
CTDP1-208ENST00000613122 PKD1L1Q8TDX9 2849 aa9.94□□□□□ -0.82
CTDP1-208ENST00000613122 TGP01266 2768 aa9.88□□□□□ -0.83
CTDP1-208ENST00000613122 LOC400499M0QZD8 3231 aa9.82□□□□□ -0.84
CTDP1-208ENST00000613122 KRTAP12-2P59991 146 aa9.77□□□□□ -0.85
CTDP1-208ENST00000613122 VWFP04275 2813 aa9.71□□□□□ -0.85
CTDP1-208ENST00000613122 PDZD2O15018 2839 aa9.7□□□□□ -0.86
CTDP1-208ENST00000613122 ASPMQ8IZT6 3477 aa9.69□□□□□ -0.86
CTDP1-208ENST00000613122 KRTAP13-4Q3LI77 160 aa9.69□□□□□ -0.86
CTDP1-208ENST00000613122 ZFHX4Q86UP3 3567 aa9.67□□□□□ -0.86
CTDP1-208ENST00000613122 DMDP11532 3685 aa9.66□□□□□ -0.86
CTDP1-208ENST00000613122 DCHS1Q96JQ0 3298 aa9.64□□□□□ -0.87
CTDP1-208ENST00000613122 KRTAP12-1P59990 96 aa9.59□□□□□ -0.87
CTDP1-208ENST00000613122 KRTAP3-1Q9BYR8 98 aa9.57□□□□□ -0.88
CTDP1-208ENST00000613122 NBPF19A0A087WUL8 3843 aa9.54□□□□□ -0.88
CTDP1-208ENST00000613122 RELNP78509 3460 aa9.54□□□□□ -0.88
CTDP1-208ENST00000613122 LAMA5O15230 3695 aa9.44□□□□□ -0.9
CTDP1-208ENST00000613122 OTOGQ6ZRI0 2925 aa9.43□□□□□ -0.9
CTDP1-208ENST00000613122 MT1HL1P0DM35 61 aa9.43□□□□□ -0.9
CTDP1-208ENST00000613122 KRTAP15-1Q3LI76 137 aa9.39□□□□□ -0.91
CTDP1-208ENST00000613122 SMG1Q96Q15 3661 aaKnown RBP9.37□□□□□ -0.91
CTDP1-208ENST00000613122 CSMD1Q96PZ7 3565 aa9.36□□□□□ -0.91
CTDP1-208ENST00000613122 ANK3Q12955 4377 aaKnown RBP9.36□□□□□ -0.91
CTDP1-208ENST00000613122 MUC3AQ02505 3323 aa9.35□□□□□ -0.91
CTDP1-208ENST00000613122 SRRM2Q9UQ35 2752 aaKnown RBP9.34□□□□□ -0.91
CTDP1-208ENST00000613122 FBN1P35555 2871 aaKnown RBP9.33□□□□□ -0.92
CTDP1-208ENST00000613122 ZFHX3Q15911 3703 aa9.33□□□□□ -0.92
CTDP1-208ENST00000613122 KRTAP10-6P60371 365 aaPredicted RBP9.27□□□□□ -0.93
CTDP1-208ENST00000613122 KRTAP4-5Q9BYR2 181 aa9.21□□□□□ -0.94
CTDP1-208ENST00000613122 SVEP1Q4LDE5 3571 aa9.15□□□□□ -0.95
CTDP1-208ENST00000613122 FBN3Q75N90 2809 aa9.14□□□□□ -0.95
CTDP1-208ENST00000613122 KRTAP10-4P60372 401 aaPredicted RBP9.09□□□□□ -0.95
CTDP1-208ENST00000613122 KRTAP10-12P60413 245 aa9.04□□□□□ -0.96
CTDP1-208ENST00000613122 MEGF8Q7Z7M0 2845 aa9.01□□□□□ -0.97
CTDP1-208ENST00000613122 SPENQ96T58 3664 aaKnown RBP8.99□□□□□ -0.97
CTDP1-208ENST00000613122 KRTAP3-3Q9BYR6 98 aa8.95□□□□□ -0.98
CTDP1-208ENST00000613122 CRCT1Q9UGL9 99 aa8.94□□□□□ -0.98
CTDP1-208ENST00000613122 KRTAP3-2Q9BYR7 98 aa8.92□□□□□ -0.98
CTDP1-208ENST00000613122 COL7A1Q02388 2944 aa8.9□□□□□ -0.98
CTDP1-208ENST00000613122 HUWE1Q7Z6Z7 4374 aaKnown RBP8.89□□□□□ -0.99
CTDP1-208ENST00000613122 ALMS1Q8TCU4 4167 aa8.89□□□□□ -0.99
CTDP1-208ENST00000613122 CUBNO60494 3623 aa8.85□□□□□ -0.99
CTDP1-208ENST00000613122 TRRAPQ9Y4A5 3859 aa8.83□□□□□ -1
CTDP1-208ENST00000613122 CSMD2Q7Z408 3487 aa8.79□□□□□ -1
CTDP1-208ENST00000613122 BSNQ9UPA5 3926 aa8.73□□□□□ -1.01
CTDP1-208ENST00000613122 KRTAP12-3P60328 96 aa8.72□□□□□ -1.01
CTDP1-208ENST00000613122 LCE3AQ5TA76 89 aa8.59□□□□□ -1.03
CTDP1-208ENST00000613122 KRTAP23-1A1A580 65 aa8.54□□□□□ -1.04
CTDP1-208ENST00000613122 INE1O15225 51 aa8.54□□□□□ -1.04
CTDP1-208ENST00000613122 LORP23490 312 aaPredicted RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms