RNA–Protein interactions for RNA: ENST00000601291.5

IRF3-228, Transcript of interferon regulatory factor 3, humanhuman

TSL 1 (best) BASIC

Gene IRF3, Length 1,556 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IRF3-228ENST00000601291 RETNLBQ9BQ08 111 aa12.73□□□□□ -0.37
IRF3-228ENST00000601291 A0A1B0GVX0 72 aa12.72□□□□□ -0.37
IRF3-228ENST00000601291 A0A087WVE0 104 aa12.69□□□□□ -0.38
IRF3-228ENST00000601291 IGHV6-1A0A0B4J1U7 121 aa12.69□□□□□ -0.38
IRF3-228ENST00000601291 FP248Q71RG6 208 aaPredicted RBP12.64□□□□□ -0.39
IRF3-228ENST00000601291 DMBT1Q9UGM3 2413 aaPredicted RBP12.62□□□□□ -0.39
IRF3-228ENST00000601291 HCG22E2RYF7 251 aa12.62□□□□□ -0.39
IRF3-228ENST00000601291 C8orf87E5RJ46 101 aa12.62□□□□□ -0.39
IRF3-228ENST00000601291 C8orf17Q9NRJ1 99 aa12.62□□□□□ -0.39
IRF3-228ENST00000601291 MMP24-AS1A0A0U1RRL7 71 aa12.59□□□□□ -0.39
IRF3-228ENST00000601291 LINC00313P59037 77 aa12.58□□□□□ -0.4
IRF3-228ENST00000601291 FAM236AA0A1B0GUQ0 79 aa12.57□□□□□ -0.4
IRF3-228ENST00000601291 FAM236BA0A1B0GV22 79 aa12.57□□□□□ -0.4
IRF3-228ENST00000601291 CASC2Q6XLA1 102 aa12.56□□□□□ -0.4
IRF3-228ENST00000601291 WFDC13Q8IUB5 93 aa12.56□□□□□ -0.4
IRF3-228ENST00000601291 NOTCH2NLQ7Z3S9 236 aa12.55□□□□□ -0.4
IRF3-228ENST00000601291 hDV103S1A0JD37 113 aa12.54□□□□□ -0.4
IRF3-228ENST00000601291 IGLV7-46A0A075B6I9 117 aa12.53□□□□□ -0.4
IRF3-228ENST00000601291 PRR4Q16378 134 aa12.52□□□□□ -0.4
IRF3-228ENST00000601291 SCGB1A1P11684 91 aa12.51□□□□□ -0.41
IRF3-228ENST00000601291 PCLOQ9Y6V0 5065 aa12.5□□□□□ -0.41
IRF3-228ENST00000601291 TMEM254Q8TBM7 123 aa12.5□□□□□ -0.41
IRF3-228ENST00000601291 C9orf92A6NGG3 77 aa12.47□□□□□ -0.41
IRF3-228ENST00000601291 MRPL34Q9BQ48 92 aaKnown RBP12.47□□□□□ -0.41
IRF3-228ENST00000601291 ATOX1O00244 68 aa12.43□□□□□ -0.42
IRF3-228ENST00000601291 KRTAP16-1A8MUX0 517 aa12.42□□□□□ -0.42
IRF3-228ENST00000601291 KRTAP13-3Q3SY46 172 aa12.39□□□□□ -0.43
IRF3-228ENST00000601291 NDUFS5O43920 106 aa12.38□□□□□ -0.43
IRF3-228ENST00000601291 SMIM20Q8N5G0 67 aa12.36□□□□□ -0.43
IRF3-228ENST00000601291 TPRXLQ17RH7 258 aa12.35□□□□□ -0.43
IRF3-228ENST00000601291 Q8N9P0 234 aaPredicted RBP12.35□□□□□ -0.43
IRF3-228ENST00000601291 OCR1Q9BZK8 76 aa12.31□□□□□ -0.44
IRF3-228ENST00000601291 TP53AIP1Q9HCN2 124 aa12.31□□□□□ -0.44
IRF3-228ENST00000601291 C20orf166-AS1Q96NR2 134 aa12.29□□□□□ -0.44
IRF3-228ENST00000601291 ANAPC13Q9BS18 74 aa12.28□□□□□ -0.44
IRF3-228ENST00000601291 TRAV7A0A075B6U4 112 aa12.27□□□□□ -0.44
IRF3-228ENST00000601291 A8MUU9 505 aa12.26□□□□□ -0.45
IRF3-228ENST00000601291 UQCRQO14949 82 aa12.26□□□□□ -0.45
IRF3-228ENST00000601291 XP32Q5T750 250 aa12.26□□□□□ -0.45
IRF3-228ENST00000601291 SERP2Q8N6R1 65 aa12.24□□□□□ -0.45
IRF3-228ENST00000601291 Q75L30 129 aa12.23□□□□□ -0.45
IRF3-228ENST00000601291 TRAV22A0A0B4J277 110 aa12.17□□□□□ -0.46
IRF3-228ENST00000601291 RPL37P61927 97 aaKnown RBP12.17□□□□□ -0.46
IRF3-228ENST00000601291 C5orf47Q569G3 176 aa12.16□□□□□ -0.46
IRF3-228ENST00000601291 COX7CP15954 63 aa12.14□□□□□ -0.47
IRF3-228ENST00000601291 ZCCHC13Q8WW36 166 aaKnown RBP12.13□□□□□ -0.47
IRF3-228ENST00000601291 MP68P56378 58 aa12.13□□□□□ -0.47
IRF3-228ENST00000601291 H0Y9P7 68 aa12.12□□□□□ -0.47
IRF3-228ENST00000601291 Q5W150 140 aa12.11□□□□□ -0.47
IRF3-228ENST00000601291 ATP11AUNQ6ZP68 121 aa12.11□□□□□ -0.47
IRF3-228ENST00000601291 HERC1Q15751 4861 aa12.09□□□□□ -0.47
IRF3-228ENST00000601291 H3BPC8 53 aa12.05□□□□□ -0.48
IRF3-228ENST00000601291 LPAP08519 4548 aa12.03□□□□□ -0.48
IRF3-228ENST00000601291 PCP4P48539 62 aa12.03□□□□□ -0.48
IRF3-228ENST00000601291 C20orf197Q8N268 126 aa12.02□□□□□ -0.49
IRF3-228ENST00000601291 LINC00208Q96KT6 92 aa12.02□□□□□ -0.49
IRF3-228ENST00000601291 C1orf64Q8NEQ6 169 aa12□□□□□ -0.49
IRF3-228ENST00000601291 LOC101927531A0A1B0GV80 90 aa11.98□□□□□ -0.49
IRF3-228ENST00000601291 HMCN2Q8NDA2 5059 aa11.97□□□□□ -0.49
IRF3-228ENST00000601291 A0A0U1RQV1 116 aa11.97□□□□□ -0.49
IRF3-228ENST00000601291 CCDC179H3BU77 68 aa11.97□□□□□ -0.49
IRF3-228ENST00000601291 SEC61BP60468 96 aaKnown RBP11.96□□□□□ -0.49
IRF3-228ENST00000601291 PCOTHQ58A44 107 aa11.96□□□□□ -0.5
IRF3-228ENST00000601291 SNURFQ9Y675 71 aa11.95□□□□□ -0.5
IRF3-228ENST00000601291 KLKP1Q107X0 134 aa11.94□□□□□ -0.5
IRF3-228ENST00000601291 IGKV2-30P06310 120 aa11.92□□□□□ -0.5
IRF3-228ENST00000601291 IGKV2D-30A0A075B6S6 120 aa11.92□□□□□ -0.5
IRF3-228ENST00000601291 C7orf65Q6ZTY9 151 aa11.9□□□□□ -0.5
IRF3-228ENST00000601291 LRP2P98164 4655 aa11.89□□□□□ -0.51
IRF3-228ENST00000601291 CYP4F30PQ9H0H9 118 aa11.88□□□□□ -0.51
IRF3-228ENST00000601291 SPINK7P58062 85 aa11.84□□□□□ -0.51
IRF3-228ENST00000601291 NDUFC1O43677 76 aa11.81□□□□□ -0.52
IRF3-228ENST00000601291 CYSTM1Q9H1C7 97 aa11.79□□□□□ -0.52
IRF3-228ENST00000601291 H7BZZ5 65 aa11.72□□□□□ -0.53
IRF3-228ENST00000601291 MUC17Q685J3 4493 aa11.71□□□□□ -0.54
IRF3-228ENST00000601291 HRES1P13985 223 aa11.68□□□□□ -0.54
IRF3-228ENST00000601291 SPANXA2-OT1Q8N9U9 137 aa11.62□□□□□ -0.55
IRF3-228ENST00000601291 C4orf26Q17RF5 130 aa11.6□□□□□ -0.55
IRF3-228ENST00000601291 KRTAP4-1Q9BYQ7 146 aa11.6□□□□□ -0.55
IRF3-228ENST00000601291 TMEM258P61165 79 aa11.59□□□□□ -0.55
IRF3-228ENST00000601291 RBM12B-AS1Q9P1G2 102 aa11.53□□□□□ -0.56
IRF3-228ENST00000601291 FAM236DA0A1B0GTK5 79 aa11.52□□□□□ -0.57
IRF3-228ENST00000601291 FAM236CP0DP71 79 aa11.52□□□□□ -0.57
IRF3-228ENST00000601291 ATP5EP56381 51 aaPredicted RBP11.52□□□□□ -0.57
IRF3-228ENST00000601291 COX6B2Q6YFQ2 88 aa11.51□□□□□ -0.57
IRF3-228ENST00000601291 MPLKIPQ8TAP9 179 aa11.5□□□□□ -0.57
IRF3-228ENST00000601291 DMAC1Q96GE9 116 aa11.47□□□□□ -0.57
IRF3-228ENST00000601291 A8MUN3 132 aa11.46□□□□□ -0.57
IRF3-228ENST00000601291 UBR4Q5T4S7 5183 aa11.45□□□□□ -0.58
IRF3-228ENST00000601291 KRTAP3-1Q9BYR8 98 aa11.4□□□□□ -0.58
IRF3-228ENST00000601291 ACYP2P14621 99 aa11.39□□□□□ -0.59
IRF3-228ENST00000601291 H1FX-AS1Q4G0G2 97 aa11.31□□□□□ -0.6
IRF3-228ENST00000601291 MUC2Q02817 5179 aa11.31□□□□□ -0.6
IRF3-228ENST00000601291 RNF213Q63HN8 5207 aa11.3□□□□□ -0.6
IRF3-228ENST00000601291 COA5Q86WW8 74 aa11.26□□□□□ -0.61
IRF3-228ENST00000601291 KRTAP19-2Q3LHN2 52 aa11.24□□□□□ -0.61
IRF3-228ENST00000601291 CHKB-CPT1BH3BT56 60 aa11.23□□□□□ -0.61
IRF3-228ENST00000601291 SERP1Q9Y6X1 66 aa11.22□□□□□ -0.61
IRF3-228ENST00000601291 S4R3F8 94 aa11.19□□□□□ -0.62
IRF3-228ENST00000601291 LCA10Q71F78 164 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms