RNA–Protein interactions for RNA: ENST00000588770.5

LAMA3-210, Transcript of laminin subunit alpha 3, humanhuman

TSL 1 (best)

Gene LAMA3, Length 4,921 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAMA3-210ENST00000588770 SMR3BP02814 79 aaPredicted RBP4.59□□□□□ -1.67
LAMA3-210ENST00000588770 UTP20O75691 2785 aaKnown RBP4.59□□□□□ -1.67
LAMA3-210ENST00000588770 TEP1Q99973 2627 aaKnown RBP4.59□□□□□ -1.67
LAMA3-210ENST00000588770 APCP25054 2843 aa4.58□□□□□ -1.68
LAMA3-210ENST00000588770 ZNF292O60281 2723 aa4.58□□□□□ -1.68
LAMA3-210ENST00000588770 UBR5O95071 2799 aaPredicted RBP4.58□□□□□ -1.68
LAMA3-210ENST00000588770 STAB1Q9NY15 2570 aa4.57□□□□□ -1.68
LAMA3-210ENST00000588770 MAST4O15021 2626 aa4.56□□□□□ -1.68
LAMA3-210ENST00000588770 R4GN34 69 aa4.55□□□□□ -1.68
LAMA3-210ENST00000588770 CFAP46Q8IYW2 2715 aa4.55□□□□□ -1.68
LAMA3-210ENST00000588770 C9orf92A6NGG3 77 aa4.54□□□□□ -1.68
LAMA3-210ENST00000588770 SPRR1BP22528 89 aa4.54□□□□□ -1.68
LAMA3-210ENST00000588770 LOC400499M0QZD8 3231 aa4.53□□□□□ -1.68
LAMA3-210ENST00000588770 NSD1Q96L73 2696 aaPredicted RBP4.53□□□□□ -1.68
LAMA3-210ENST00000588770 H0YAA0 97 aa4.53□□□□□ -1.68
LAMA3-210ENST00000588770 SMG1Q96Q15 3661 aaKnown RBP4.5□□□□□ -1.69
LAMA3-210ENST00000588770 KRTAP15-1Q3LI76 137 aa4.5□□□□□ -1.69
LAMA3-210ENST00000588770 STAB2Q8WWQ8 2551 aa4.49□□□□□ -1.69
LAMA3-210ENST00000588770 S4R3F8 94 aa4.49□□□□□ -1.69
LAMA3-210ENST00000588770 CELSR2Q9HCU4 2923 aa4.47□□□□□ -1.69
LAMA3-210ENST00000588770 SETXQ7Z333 2677 aaKnown RBP4.47□□□□□ -1.69
LAMA3-210ENST00000588770 C10orf95Q9H7T3 257 aa4.46□□□□□ -1.69
LAMA3-210ENST00000588770 Q5VSD8 79 aa4.46□□□□□ -1.7
LAMA3-210ENST00000588770 CRYBG3Q68DQ2 2970 aa4.45□□□□□ -1.7
LAMA3-210ENST00000588770 HIVEP1P15822 2718 aa4.45□□□□□ -1.7
LAMA3-210ENST00000588770 ZANQ9Y493 2812 aa4.44□□□□□ -1.7
LAMA3-210ENST00000588770 KRTAP21-3Q3LHN1 58 aa4.43□□□□□ -1.7
LAMA3-210ENST00000588770 CSMD1Q96PZ7 3565 aa4.43□□□□□ -1.7
LAMA3-210ENST00000588770 FBN2P35556 2912 aa4.42□□□□□ -1.7
LAMA3-210ENST00000588770 KRTAP10-3P60369 221 aa4.42□□□□□ -1.7
LAMA3-210ENST00000588770 M0QZ58 72 aa4.41□□□□□ -1.7
LAMA3-210ENST00000588770 RELNP78509 3460 aa4.41□□□□□ -1.7
LAMA3-210ENST00000588770 TPRXLQ17RH7 258 aa4.41□□□□□ -1.7
LAMA3-210ENST00000588770 KRTAP7-1Q8IUC3 87 aa4.41□□□□□ -1.7
LAMA3-210ENST00000588770 NF1P21359 2839 aa4.4□□□□□ -1.71
LAMA3-210ENST00000588770 VPS13CQ709C8 3753 aa4.39□□□□□ -1.71
LAMA3-210ENST00000588770 FLNCQ14315 2725 aa4.37□□□□□ -1.71
LAMA3-210ENST00000588770 KRTAP23-1A1A580 65 aa4.36□□□□□ -1.71
LAMA3-210ENST00000588770 KRTAP13-3Q3SY46 172 aa4.36□□□□□ -1.71
LAMA3-210ENST00000588770 KRTAP10-11P60412 298 aa4.35□□□□□ -1.71
LAMA3-210ENST00000588770 CUBNO60494 3623 aa4.34□□□□□ -1.72
LAMA3-210ENST00000588770 DCHS2Q6V1P9 2916 aa4.33□□□□□ -1.72
LAMA3-210ENST00000588770 CELSR1Q9NYQ6 3014 aa4.33□□□□□ -1.72
LAMA3-210ENST00000588770 HRNRQ86YZ3 2850 aaPredicted RBP4.32□□□□□ -1.72
LAMA3-210ENST00000588770 NBPF19A0A087WUL8 3843 aa4.31□□□□□ -1.72
LAMA3-210ENST00000588770 TNP1P09430 55 aa4.29□□□□□ -1.72
LAMA3-210ENST00000588770 PDZD2O15018 2839 aa4.28□□□□□ -1.72
LAMA3-210ENST00000588770 NIPBLQ6KC79 2804 aaeCLIP4.28□□□□□ -1.72
LAMA3-210ENST00000588770 KRTAP1-5Q9BYS1 174 aa4.27□□□□□ -1.73
LAMA3-210ENST00000588770 SRRM2Q9UQ35 2752 aaKnown RBP4.25□□□□□ -1.73
LAMA3-210ENST00000588770 MXRA5Q9NR99 2828 aa4.24□□□□□ -1.73
LAMA3-210ENST00000588770 TGP01266 2768 aa4.23□□□□□ -1.73
LAMA3-210ENST00000588770 KRTAP1-3Q8IUG1 177 aa4.23□□□□□ -1.73
LAMA3-210ENST00000588770 KMT2BQ9UMN6 2715 aaPredicted RBP4.22□□□□□ -1.73
LAMA3-210ENST00000588770 ITPR2Q14571 2701 aa4.22□□□□□ -1.73
LAMA3-210ENST00000588770 SVEP1Q4LDE5 3571 aa4.21□□□□□ -1.74
LAMA3-210ENST00000588770 KRTAP1-1Q07627 177 aa4.2□□□□□ -1.74
LAMA3-210ENST00000588770 IGSF10Q6WRI0 2623 aa4.2□□□□□ -1.74
LAMA3-210ENST00000588770 INE1O15225 51 aa4.2□□□□□ -1.74
LAMA3-210ENST00000588770 CSMD2Q7Z408 3487 aa4.18□□□□□ -1.74
LAMA3-210ENST00000588770 KRTAP13-1Q8IUC0 172 aa4.18□□□□□ -1.74
LAMA3-210ENST00000588770 ZNF469Q96JG9 3925 aaPredicted RBP4.15□□□□□ -1.75
LAMA3-210ENST00000588770 PRO2289Q9P1D8 64 aa4.14□□□□□ -1.75
LAMA3-210ENST00000588770 TENM4Q6N022 2769 aa4.13□□□□□ -1.75
LAMA3-210ENST00000588770 AKAP9Q99996 3911 aa4.12□□□□□ -1.75
LAMA3-210ENST00000588770 ALMS1Q8TCU4 4167 aa4.12□□□□□ -1.75
LAMA3-210ENST00000588770 TENM3Q9P273 2699 aa4.11□□□□□ -1.75
LAMA3-210ENST00000588770 KRTAP10-8P60410 259 aa4.09□□□□□ -1.75
LAMA3-210ENST00000588770 TENM2Q9NT68 2774 aa4.07□□□□□ -1.76
LAMA3-210ENST00000588770 PKD1L1Q8TDX9 2849 aa4.04□□□□□ -1.76
LAMA3-210ENST00000588770 KRTAP10-1P60331 282 aa4.04□□□□□ -1.76
LAMA3-210ENST00000588770 KRTAP13-2Q52LG2 175 aa4.04□□□□□ -1.76
LAMA3-210ENST00000588770 OTOGQ6ZRI0 2925 aa4.03□□□□□ -1.76
LAMA3-210ENST00000588770 KRTAP12-2P59991 146 aa4.02□□□□□ -1.77
LAMA3-210ENST00000588770 XP32Q5T750 250 aa4.02□□□□□ -1.77
LAMA3-210ENST00000588770 Q6ZRN7 208 aaPredicted RBP4.02□□□□□ -1.77
LAMA3-210ENST00000588770 RPS29P62273 56 aaKnown RBP4.02□□□□□ -1.77
LAMA3-210ENST00000588770 VWFP04275 2813 aa3.99□□□□□ -1.77
LAMA3-210ENST00000588770 KRTAP13-4Q3LI77 160 aa3.99□□□□□ -1.77
LAMA3-210ENST00000588770 COL7A1Q02388 2944 aa3.98□□□□□ -1.77
LAMA3-210ENST00000588770 KRTAP10-2P60368 255 aa3.96□□□□□ -1.78
LAMA3-210ENST00000588770 KRTAP12-1P59990 96 aa3.94□□□□□ -1.78
LAMA3-210ENST00000588770 KRTAP3-1Q9BYR8 98 aa3.94□□□□□ -1.78
LAMA3-210ENST00000588770 TENM1Q9UKZ4 2725 aa3.93□□□□□ -1.78
LAMA3-210ENST00000588770 KRTAP10-6P60371 365 aaPredicted RBP3.93□□□□□ -1.78
LAMA3-210ENST00000588770 FBN1P35555 2871 aaKnown RBP3.93□□□□□ -1.78
LAMA3-210ENST00000588770 CMYA5Q8N3K9 4069 aa3.93□□□□□ -1.78
LAMA3-210ENST00000588770 ANK3Q12955 4377 aaKnown RBP3.9□□□□□ -1.79
LAMA3-210ENST00000588770 ANK2Q01484 3957 aa3.87□□□□□ -1.79
LAMA3-210ENST00000588770 FBN3Q75N90 2809 aa3.87□□□□□ -1.79
LAMA3-210ENST00000588770 KRTAP3-2Q9BYR7 98 aa3.87□□□□□ -1.79
LAMA3-210ENST00000588770 KRTAP10-10P60014 251 aa3.83□□□□□ -1.8
LAMA3-210ENST00000588770 MEGF8Q7Z7M0 2845 aa3.83□□□□□ -1.8
LAMA3-210ENST00000588770 KRTAP1-4P0C5Y4 121 aa3.8□□□□□ -1.8
LAMA3-210ENST00000588770 DNHD1Q96M86 4753 aa3.78□□□□□ -1.8
LAMA3-210ENST00000588770 DNAH3Q8TD57 4116 aa3.77□□□□□ -1.81
LAMA3-210ENST00000588770 CSMD3Q7Z407 3707 aa3.75□□□□□ -1.81
LAMA3-210ENST00000588770 TRRAPQ9Y4A5 3859 aa3.74□□□□□ -1.81
LAMA3-210ENST00000588770 KRTAP3-3Q9BYR6 98 aa3.69□□□□□ -1.82
LAMA3-210ENST00000588770 LYSTQ99698 3801 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms