RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 SPATA8Q6RVD6 105 aa4.67□□□□□ -1.66
SYNE2-220ENST00000555612 BOD1L1Q8NFC6 3051 aa4.67□□□□□ -1.66
SYNE2-220ENST00000555612 UTP20O75691 2785 aaKnown RBP4.66□□□□□ -1.66
SYNE2-220ENST00000555612 VCANP13611 3396 aa4.66□□□□□ -1.66
SYNE2-220ENST00000555612 MXRA5Q9NR99 2828 aa4.66□□□□□ -1.66
SYNE2-220ENST00000555612 SPEGQ15772 3267 aa4.66□□□□□ -1.66
SYNE2-220ENST00000555612 C20orf166-AS1Q96NR2 134 aa4.66□□□□□ -1.66
SYNE2-220ENST00000555612 EYSQ5T1H1 3165 aa4.66□□□□□ -1.66
SYNE2-220ENST00000555612 TENM4Q6N022 2769 aa4.66□□□□□ -1.66
SYNE2-220ENST00000555612 KRTAP7-1Q8IUC3 87 aa4.65□□□□□ -1.66
SYNE2-220ENST00000555612 A0A0A0MQY5 61 aa4.65□□□□□ -1.67
SYNE2-220ENST00000555612 H3BS24 57 aa4.64□□□□□ -1.67
SYNE2-220ENST00000555612 ROMO1P60602 79 aa4.63□□□□□ -1.67
SYNE2-220ENST00000555612 ADGRG4Q8IZF6 3080 aa4.63□□□□□ -1.67
SYNE2-220ENST00000555612 ASB16-AS1Q495Z4 193 aa4.62□□□□□ -1.67
SYNE2-220ENST00000555612 NF1P21359 2839 aa4.62□□□□□ -1.67
SYNE2-220ENST00000555612 LRBAP50851 2863 aa4.62□□□□□ -1.67
SYNE2-220ENST00000555612 MYO15AQ9UKN7 3530 aa4.62□□□□□ -1.67
SYNE2-220ENST00000555612 DMXL1Q9Y485 3027 aa4.62□□□□□ -1.67
SYNE2-220ENST00000555612 A8MUU9 505 aa4.61□□□□□ -1.67
SYNE2-220ENST00000555612 PDZD2O15018 2839 aa4.6□□□□□ -1.67
SYNE2-220ENST00000555612 CRYBG3Q68DQ2 2970 aa4.59□□□□□ -1.67
SYNE2-220ENST00000555612 KRTAP13-1Q8IUC0 172 aa4.59□□□□□ -1.67
SYNE2-220ENST00000555612 LAMA1P25391 3075 aa4.58□□□□□ -1.68
SYNE2-220ENST00000555612 FBN2P35556 2912 aa4.57□□□□□ -1.68
SYNE2-220ENST00000555612 OTOGQ6ZRI0 2925 aa4.56□□□□□ -1.68
SYNE2-220ENST00000555612 COL6A3P12111 3177 aa4.54□□□□□ -1.68
SYNE2-220ENST00000555612 TENM1Q9UKZ4 2725 aa4.52□□□□□ -1.69
SYNE2-220ENST00000555612 WDFY3Q8IZQ1 3526 aa4.52□□□□□ -1.69
SYNE2-220ENST00000555612 A8MU10 97 aa4.51□□□□□ -1.69
SYNE2-220ENST00000555612 TENM3Q9P273 2699 aa4.51□□□□□ -1.69
SYNE2-220ENST00000555612 A0A1B0GVY2 172 aa4.5□□□□□ -1.69
SYNE2-220ENST00000555612 CELSR2Q9HCU4 2923 aa4.49□□□□□ -1.69
SYNE2-220ENST00000555612 A6NN06 94 aa4.48□□□□□ -1.69
SYNE2-220ENST00000555612 XP32Q5T750 250 aa4.46□□□□□ -1.69
SYNE2-220ENST00000555612 P0C880 135 aa4.46□□□□□ -1.7
SYNE2-220ENST00000555612 DCHS2Q6V1P9 2916 aa4.45□□□□□ -1.7
SYNE2-220ENST00000555612 SPTBN5Q9NRC6 3674 aaKnown RBP4.45□□□□□ -1.7
SYNE2-220ENST00000555612 KRTAP1-4P0C5Y4 121 aa4.45□□□□□ -1.7
SYNE2-220ENST00000555612 VWFP04275 2813 aa4.43□□□□□ -1.7
SYNE2-220ENST00000555612 CFAP47Q6ZTR5 3102 aa4.42□□□□□ -1.7
SYNE2-220ENST00000555612 TNP1P09430 55 aa4.42□□□□□ -1.7
SYNE2-220ENST00000555612 KRTAP10-8P60410 259 aa4.41□□□□□ -1.7
SYNE2-220ENST00000555612 DCHS1Q96JQ0 3298 aa4.4□□□□□ -1.7
SYNE2-220ENST00000555612 TPRXLQ17RH7 258 aa4.39□□□□□ -1.71
SYNE2-220ENST00000555612 KRTAP10-10P60014 251 aa4.38□□□□□ -1.71
SYNE2-220ENST00000555612 TENM2Q9NT68 2774 aa4.36□□□□□ -1.71
SYNE2-220ENST00000555612 KRTAP16-1A8MUX0 517 aa4.35□□□□□ -1.71
SYNE2-220ENST00000555612 C10orf95Q9H7T3 257 aa4.34□□□□□ -1.71
SYNE2-220ENST00000555612 FBN3Q75N90 2809 aa4.33□□□□□ -1.72
SYNE2-220ENST00000555612 ASPMQ8IZT6 3477 aa4.32□□□□□ -1.72
SYNE2-220ENST00000555612 KRTAP25-1Q3LHN0 102 aa4.31□□□□□ -1.72
SYNE2-220ENST00000555612 NDUFAF8A1L188 74 aa4.31□□□□□ -1.72
SYNE2-220ENST00000555612 KRTAP13-3Q3SY46 172 aa4.3□□□□□ -1.72
SYNE2-220ENST00000555612 LOC400499M0QZD8 3231 aa4.3□□□□□ -1.72
SYNE2-220ENST00000555612 MUC3AQ02505 3323 aa4.28□□□□□ -1.72
SYNE2-220ENST00000555612 ZFHX4Q86UP3 3567 aa4.26□□□□□ -1.73
SYNE2-220ENST00000555612 CSMD1Q96PZ7 3565 aa4.25□□□□□ -1.73
SYNE2-220ENST00000555612 PRO2289Q9P1D8 64 aa4.25□□□□□ -1.73
SYNE2-220ENST00000555612 PKD1L1Q8TDX9 2849 aa4.25□□□□□ -1.73
SYNE2-220ENST00000555612 LAMA5O15230 3695 aa4.24□□□□□ -1.73
SYNE2-220ENST00000555612 PP632Q6XCG6 107 aa4.17□□□□□ -1.74
SYNE2-220ENST00000555612 FBN1P35555 2871 aaKnown RBP4.16□□□□□ -1.74
SYNE2-220ENST00000555612 RELNP78509 3460 aa4.16□□□□□ -1.74
SYNE2-220ENST00000555612 MEGF8Q7Z7M0 2845 aa4.15□□□□□ -1.74
SYNE2-220ENST00000555612 H0YAA0 97 aa4.13□□□□□ -1.75
SYNE2-220ENST00000555612 CELSR1Q9NYQ6 3014 aa4.12□□□□□ -1.75
SYNE2-220ENST00000555612 DMDP11532 3685 aa4.11□□□□□ -1.75
SYNE2-220ENST00000555612 SMG1Q96Q15 3661 aaKnown RBP4.1□□□□□ -1.75
SYNE2-220ENST00000555612 TGP01266 2768 aa4.08□□□□□ -1.76
SYNE2-220ENST00000555612 CUBNO60494 3623 aa4.08□□□□□ -1.76
SYNE2-220ENST00000555612 SVEP1Q4LDE5 3571 aa4.06□□□□□ -1.76
SYNE2-220ENST00000555612 KRTAP3-3Q9BYR6 98 aa4.05□□□□□ -1.76
SYNE2-220ENST00000555612 KRTAP3-2Q9BYR7 98 aa4.05□□□□□ -1.76
SYNE2-220ENST00000555612 SPENQ96T58 3664 aaKnown RBP4.02□□□□□ -1.77
SYNE2-220ENST00000555612 NBPF19A0A087WUL8 3843 aa3.99□□□□□ -1.77
SYNE2-220ENST00000555612 SRRM2Q9UQ35 2752 aaKnown RBP3.96□□□□□ -1.78
SYNE2-220ENST00000555612 DNHD1Q96M86 4753 aa3.95□□□□□ -1.78
SYNE2-220ENST00000555612 KRTAP12-2P59991 146 aa3.95□□□□□ -1.78
SYNE2-220ENST00000555612 ANK3Q12955 4377 aaKnown RBP3.95□□□□□ -1.78
SYNE2-220ENST00000555612 ZFHX3Q15911 3703 aa3.9□□□□□ -1.78
SYNE2-220ENST00000555612 KIAA1109Q2LD37 5005 aa3.9□□□□□ -1.79
SYNE2-220ENST00000555612 LCE2DQ5TA82 110 aaPredicted RBP3.89□□□□□ -1.79
SYNE2-220ENST00000555612 MT1HL1P0DM35 61 aa3.89□□□□□ -1.79
SYNE2-220ENST00000555612 KRTAP4-5Q9BYR2 181 aa3.89□□□□□ -1.79
SYNE2-220ENST00000555612 KRTAP13-4Q3LI77 160 aa3.88□□□□□ -1.79
SYNE2-220ENST00000555612 KRTAP3-1Q9BYR8 98 aa3.88□□□□□ -1.79
SYNE2-220ENST00000555612 CRCT1Q9UGL9 99 aa3.86□□□□□ -1.79
SYNE2-220ENST00000555612 KRTAP12-1P59990 96 aa3.86□□□□□ -1.79
SYNE2-220ENST00000555612 PLECQ15149 4684 aaKnown RBP3.85□□□□□ -1.79
SYNE2-220ENST00000555612 RYR1P21817 5038 aa3.83□□□□□ -1.8
SYNE2-220ENST00000555612 CSMD2Q7Z408 3487 aa3.82□□□□□ -1.8
SYNE2-220ENST00000555612 KRTAP15-1Q3LI76 137 aa3.82□□□□□ -1.8
SYNE2-220ENST00000555612 RYR2Q92736 4967 aa3.82□□□□□ -1.8
SYNE2-220ENST00000555612 KRTAP10-6P60371 365 aaPredicted RBP3.78□□□□□ -1.8
SYNE2-220ENST00000555612 KRTAP10-4P60372 401 aaPredicted RBP3.74□□□□□ -1.81
SYNE2-220ENST00000555612 DNAH10Q8IVF4 4471 aa3.74□□□□□ -1.81
SYNE2-220ENST00000555612 DNAH11Q96DT5 4516 aa3.73□□□□□ -1.81
SYNE2-220ENST00000555612 HYDINQ4G0P3 5121 aa3.73□□□□□ -1.81
SYNE2-220ENST00000555612 BIRC6Q9NR09 4857 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 155.8 ms