RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 HCG22E2RYF7 251 aa4.2□□□□□ -1.74
VPS53-205ENST00000541903 C8orf87E5RJ46 101 aa4.18□□□□□ -1.74
VPS53-205ENST00000541903 ATOX1O00244 68 aa4.18□□□□□ -1.74
VPS53-205ENST00000541903 MT1HL1P0DM35 61 aa4.18□□□□□ -1.74
VPS53-205ENST00000541903 WFDC13Q8IUB5 93 aa4.18□□□□□ -1.74
VPS53-205ENST00000541903 C8orf17Q9NRJ1 99 aa4.18□□□□□ -1.74
VPS53-205ENST00000541903 MMP24-AS1A0A0U1RRL7 71 aa4.17□□□□□ -1.74
VPS53-205ENST00000541903 KRTAP29-1A8MX34 341 aaPredicted RBP4.17□□□□□ -1.74
VPS53-205ENST00000541903 CASC2Q6XLA1 102 aa4.17□□□□□ -1.74
VPS53-205ENST00000541903 FLG2Q5D862 2391 aaPredicted RBP4.16□□□□□ -1.74
VPS53-205ENST00000541903 ANAPC13Q9BS18 74 aa4.16□□□□□ -1.74
VPS53-205ENST00000541903 hDV103S1A0JD37 113 aa4.15□□□□□ -1.75
VPS53-205ENST00000541903 SMIM20Q8N5G0 67 aa4.15□□□□□ -1.75
VPS53-205ENST00000541903 RETNLBQ9BQ08 111 aa4.15□□□□□ -1.75
VPS53-205ENST00000541903 J3QL48 77 aa4.14□□□□□ -1.75
VPS53-205ENST00000541903 LINC00313P59037 77 aa4.14□□□□□ -1.75
VPS53-205ENST00000541903 TMEM254Q8TBM7 123 aa4.14□□□□□ -1.75
VPS53-205ENST00000541903 ABCA13Q86UQ4 5058 aa4.13□□□□□ -1.75
VPS53-205ENST00000541903 FP248Q71RG6 208 aaPredicted RBP4.13□□□□□ -1.75
VPS53-205ENST00000541903 NOTCH2NLQ7Z3S9 236 aa4.13□□□□□ -1.75
VPS53-205ENST00000541903 MRPL34Q9BQ48 92 aaKnown RBP4.13□□□□□ -1.75
VPS53-205ENST00000541903 SERP2Q8N6R1 65 aa4.12□□□□□ -1.75
VPS53-205ENST00000541903 FAT3Q8TDW7 4589 aa4.11□□□□□ -1.75
VPS53-205ENST00000541903 TRAV7A0A075B6U4 112 aa4.11□□□□□ -1.75
VPS53-205ENST00000541903 NDUFS5O43920 106 aa4.11□□□□□ -1.75
VPS53-205ENST00000541903 PCP4P48539 62 aa4.11□□□□□ -1.75
VPS53-205ENST00000541903 LRP1Q07954 4544 aaKnown RBP4.11□□□□□ -1.75
VPS53-205ENST00000541903 IGLV7-46A0A075B6I9 117 aa4.1□□□□□ -1.75
VPS53-205ENST00000541903 OCR1Q9BZK8 76 aa4.1□□□□□ -1.75
VPS53-205ENST00000541903 UQCRQO14949 82 aa4.09□□□□□ -1.75
VPS53-205ENST00000541903 COX7CP15954 63 aa4.09□□□□□ -1.75
VPS53-205ENST00000541903 TP53AIP1Q9HCN2 124 aa4.09□□□□□ -1.75
VPS53-205ENST00000541903 C9orf92A6NGG3 77 aa4.08□□□□□ -1.76
VPS53-205ENST00000541903 KRTAP16-1A8MUX0 517 aa4.08□□□□□ -1.76
VPS53-205ENST00000541903 PRR4Q16378 134 aa4.08□□□□□ -1.76
VPS53-205ENST00000541903 TNXBP22105 4242 aa4.08□□□□□ -1.76
VPS53-205ENST00000541903 DMBT1Q9UGM3 2413 aaPredicted RBP4.06□□□□□ -1.76
VPS53-205ENST00000541903 MYCBP2O75592 4640 aa4.06□□□□□ -1.76
VPS53-205ENST00000541903 MP68P56378 58 aa4.06□□□□□ -1.76
VPS53-205ENST00000541903 Q8N9P0 234 aaPredicted RBP4.06□□□□□ -1.76
VPS53-205ENST00000541903 C5orf47Q569G3 176 aa4.05□□□□□ -1.76
VPS53-205ENST00000541903 HERC1Q15751 4861 aa4.05□□□□□ -1.76
VPS53-205ENST00000541903 TRAV22A0A0B4J277 110 aa4.04□□□□□ -1.76
VPS53-205ENST00000541903 H0Y9P7 68 aa4.04□□□□□ -1.76
VPS53-205ENST00000541903 CCDC179H3BU77 68 aa4.04□□□□□ -1.76
VPS53-205ENST00000541903 KRTAP13-3Q3SY46 172 aa4.04□□□□□ -1.76
VPS53-205ENST00000541903 C20orf197Q8N268 126 aa4.04□□□□□ -1.76
VPS53-205ENST00000541903 C20orf166-AS1Q96NR2 134 aa4.03□□□□□ -1.76
VPS53-205ENST00000541903 A8MUU9 505 aa4.02□□□□□ -1.77
VPS53-205ENST00000541903 H3BPC8 53 aa4.02□□□□□ -1.77
VPS53-205ENST00000541903 TPRXLQ17RH7 258 aa4.02□□□□□ -1.77
VPS53-205ENST00000541903 A0A0U1RQV1 116 aa4.01□□□□□ -1.77
VPS53-205ENST00000541903 Q75L30 129 aa4.01□□□□□ -1.77
VPS53-205ENST00000541903 SNURFQ9Y675 71 aa4.01□□□□□ -1.77
VPS53-205ENST00000541903 KLKP1Q107X0 134 aa4□□□□□ -1.77
VPS53-205ENST00000541903 XP32Q5T750 250 aa4□□□□□ -1.77
VPS53-205ENST00000541903 Q5W150 140 aa4□□□□□ -1.77
VPS53-205ENST00000541903 ZCCHC13Q8WW36 166 aaKnown RBP4□□□□□ -1.77
VPS53-205ENST00000541903 LINC00208Q96KT6 92 aa4□□□□□ -1.77
VPS53-205ENST00000541903 LOC101927531A0A1B0GV80 90 aa3.99□□□□□ -1.77
VPS53-205ENST00000541903 RPL37P61927 97 aaKnown RBP3.99□□□□□ -1.77
VPS53-205ENST00000541903 C1orf64Q8NEQ6 169 aa3.99□□□□□ -1.77
VPS53-205ENST00000541903 NDUFC1O43677 76 aa3.98□□□□□ -1.77
VPS53-205ENST00000541903 ATP11AUNQ6ZP68 121 aa3.97□□□□□ -1.77
VPS53-205ENST00000541903 IGKV2D-30A0A075B6S6 120 aa3.95□□□□□ -1.78
VPS53-205ENST00000541903 IGKV2-30P06310 120 aa3.95□□□□□ -1.78
VPS53-205ENST00000541903 CYSTM1Q9H1C7 97 aa3.95□□□□□ -1.78
VPS53-205ENST00000541903 C7orf65Q6ZTY9 151 aa3.94□□□□□ -1.78
VPS53-205ENST00000541903 H7BZZ5 65 aa3.93□□□□□ -1.78
VPS53-205ENST00000541903 PCOTHQ58A44 107 aa3.93□□□□□ -1.78
VPS53-205ENST00000541903 CYP4F30PQ9H0H9 118 aa3.93□□□□□ -1.78
VPS53-205ENST00000541903 TMEM258P61165 79 aa3.92□□□□□ -1.78
VPS53-205ENST00000541903 SEC61BP60468 96 aaKnown RBP3.91□□□□□ -1.78
VPS53-205ENST00000541903 FAM236DA0A1B0GTK5 79 aa3.9□□□□□ -1.79
VPS53-205ENST00000541903 FAM236CP0DP71 79 aa3.9□□□□□ -1.79
VPS53-205ENST00000541903 SPINK7P58062 85 aa3.9□□□□□ -1.79
VPS53-205ENST00000541903 ATP5EP56381 51 aaPredicted RBP3.89□□□□□ -1.79
VPS53-205ENST00000541903 SPANXA2-OT1Q8N9U9 137 aa3.89□□□□□ -1.79
VPS53-205ENST00000541903 HRES1P13985 223 aa3.88□□□□□ -1.79
VPS53-205ENST00000541903 C4orf26Q17RF5 130 aa3.83□□□□□ -1.8
VPS53-205ENST00000541903 DMAC1Q96GE9 116 aa3.82□□□□□ -1.8
VPS53-205ENST00000541903 HMCN2Q8NDA2 5059 aa3.81□□□□□ -1.8
VPS53-205ENST00000541903 LPAP08519 4548 aa3.8□□□□□ -1.8
VPS53-205ENST00000541903 A8MUN3 132 aa3.8□□□□□ -1.8
VPS53-205ENST00000541903 COX6B2Q6YFQ2 88 aa3.8□□□□□ -1.8
VPS53-205ENST00000541903 SERP1Q9Y6X1 66 aa3.8□□□□□ -1.8
VPS53-205ENST00000541903 ACYP2P14621 99 aa3.79□□□□□ -1.8
VPS53-205ENST00000541903 RBM12B-AS1Q9P1G2 102 aa3.79□□□□□ -1.8
VPS53-205ENST00000541903 LRP2P98164 4655 aa3.78□□□□□ -1.8
VPS53-205ENST00000541903 CHKB-CPT1BH3BT56 60 aa3.77□□□□□ -1.81
VPS53-205ENST00000541903 COA5Q86WW8 74 aa3.77□□□□□ -1.81
VPS53-205ENST00000541903 MUC17Q685J3 4493 aa3.75□□□□□ -1.81
VPS53-205ENST00000541903 KRTAP9-6A0A140TA67 174 aa3.75□□□□□ -1.81
VPS53-205ENST00000541903 RPS28P62857 69 aaKnown RBP3.75□□□□□ -1.81
VPS53-205ENST00000541903 MPLKIPQ8TAP9 179 aa3.75□□□□□ -1.81
VPS53-205ENST00000541903 KRTAP4-1Q9BYQ7 146 aa3.75□□□□□ -1.81
VPS53-205ENST00000541903 KRTAP3-1Q9BYR8 98 aa3.74□□□□□ -1.81
VPS53-205ENST00000541903 RNF213Q63HN8 5207 aa3.73□□□□□ -1.81
VPS53-205ENST00000541903 H1FX-AS1Q4G0G2 97 aa3.72□□□□□ -1.81
VPS53-205ENST00000541903 KRTAP9-2Q9BYQ4 174 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms