RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 A0A0U1RQV1 116 aa10.13□□□□□ -0.79
VPS33A-205ENST00000541169 A0A1B0GVX0 72 aa10.12□□□□□ -0.79
VPS33A-205ENST00000541169 IGHV6-1A0A0B4J1U7 121 aa10.1□□□□□ -0.79
VPS33A-205ENST00000541169 A8MWP4 228 aa10.1□□□□□ -0.79
VPS33A-205ENST00000541169 C20orf166-AS1Q96NR2 134 aa10.09□□□□□ -0.79
VPS33A-205ENST00000541169 DSCR10P59022 87 aa10.08□□□□□ -0.8
VPS33A-205ENST00000541169 ETDBQ3ZM63 59 aa10.08□□□□□ -0.8
VPS33A-205ENST00000541169 ATP11AUNQ6ZP68 121 aa10.08□□□□□ -0.8
VPS33A-205ENST00000541169 PCOTHQ58A44 107 aa10.07□□□□□ -0.8
VPS33A-205ENST00000541169 UBL5Q9BZL1 73 aa10.06□□□□□ -0.8
VPS33A-205ENST00000541169 A8MUU9 505 aa10.05□□□□□ -0.8
VPS33A-205ENST00000541169 BPY2O14599 106 aa10.04□□□□□ -0.8
VPS33A-205ENST00000541169 Q6ZVQ6 151 aa10.03□□□□□ -0.8
VPS33A-205ENST00000541169 PRR15Q8IV56 129 aa10.01□□□□□ -0.81
VPS33A-205ENST00000541169 KRTAP16-1A8MUX0 517 aa10□□□□□ -0.81
VPS33A-205ENST00000541169 IGKV3D-7A0A0C4DH55 119 aa9.99□□□□□ -0.81
VPS33A-205ENST00000541169 RNF213Q63HN8 5207 aa9.98□□□□□ -0.81
VPS33A-205ENST00000541169 NOTCH2NLQ7Z3S9 236 aa9.98□□□□□ -0.81
VPS33A-205ENST00000541169 LINC00846Q9NV44 126 aa9.98□□□□□ -0.81
VPS33A-205ENST00000541169 ACYP1P07311 99 aa9.97□□□□□ -0.81
VPS33A-205ENST00000541169 C8orf17Q9NRJ1 99 aa9.97□□□□□ -0.81
VPS33A-205ENST00000541169 A0A1B0GV90 55 aa9.96□□□□□ -0.82
VPS33A-205ENST00000541169 MUC17Q685J3 4493 aa9.94□□□□□ -0.82
VPS33A-205ENST00000541169 FAM240AA0A1B0GVK7 77 aa9.92□□□□□ -0.82
VPS33A-205ENST00000541169 KRTAP4-1Q9BYQ7 146 aa9.92□□□□□ -0.82
VPS33A-205ENST00000541169 KRTAP3-3Q9BYR6 98 aa9.92□□□□□ -0.82
VPS33A-205ENST00000541169 KRTAP3-2Q9BYR7 98 aa9.92□□□□□ -0.82
VPS33A-205ENST00000541169 K7EQZ3 153 aa9.91□□□□□ -0.82
VPS33A-205ENST00000541169 Q8N9P0 234 aaPredicted RBP9.9□□□□□ -0.82
VPS33A-205ENST00000541169 MUC2Q02817 5179 aa9.89□□□□□ -0.83
VPS33A-205ENST00000541169 CXCL6P80162 114 aa9.88□□□□□ -0.83
VPS33A-205ENST00000541169 TMEM254Q8TBM7 123 aa9.88□□□□□ -0.83
VPS33A-205ENST00000541169 hDV103S1A0JD37 113 aa9.87□□□□□ -0.83
VPS33A-205ENST00000541169 MMP24-AS1A0A0U1RRL7 71 aa9.86□□□□□ -0.83
VPS33A-205ENST00000541169 MRPL34Q9BQ48 92 aaKnown RBP9.85□□□□□ -0.83
VPS33A-205ENST00000541169 ZCCHC13Q8WW36 166 aaKnown RBP9.81□□□□□ -0.84
VPS33A-205ENST00000541169 ATP5EP2Q5VTU8 51 aa9.8□□□□□ -0.84
VPS33A-205ENST00000541169 J3QR89 54 aa9.79□□□□□ -0.84
VPS33A-205ENST00000541169 CASC2Q6XLA1 102 aa9.79□□□□□ -0.84
VPS33A-205ENST00000541169 Q8N9L7 120 aa9.78□□□□□ -0.84
VPS33A-205ENST00000541169 HCG22E2RYF7 251 aa9.75□□□□□ -0.85
VPS33A-205ENST00000541169 NDUFS5O43920 106 aa9.73□□□□□ -0.85
VPS33A-205ENST00000541169 WFDC13Q8IUB5 93 aa9.72□□□□□ -0.85
VPS33A-205ENST00000541169 LINC00643Q86TS7 51 aa9.7□□□□□ -0.86
VPS33A-205ENST00000541169 COX6B2Q6YFQ2 88 aa9.69□□□□□ -0.86
VPS33A-205ENST00000541169 LCE2AQ5TA79 106 aaPredicted RBP9.67□□□□□ -0.86
VPS33A-205ENST00000541169 KRTAP19-2Q3LHN2 52 aa9.66□□□□□ -0.86
VPS33A-205ENST00000541169 SPINK7P58062 85 aa9.64□□□□□ -0.87
VPS33A-205ENST00000541169 LCE2CQ5TA81 110 aa9.64□□□□□ -0.87
VPS33A-205ENST00000541169 TP53AIP1Q9HCN2 124 aa9.64□□□□□ -0.87
VPS33A-205ENST00000541169 RBM12B-AS1Q9P1G2 102 aa9.64□□□□□ -0.87
VPS33A-205ENST00000541169 HIST1H4AP62805 103 aaKnown RBP9.59□□□□□ -0.87
VPS33A-205ENST00000541169 FAT4Q6V0I7 4981 aa9.58□□□□□ -0.88
VPS33A-205ENST00000541169 HRES1P13985 223 aa9.57□□□□□ -0.88
VPS33A-205ENST00000541169 MPLKIPQ8TAP9 179 aa9.56□□□□□ -0.88
VPS33A-205ENST00000541169 K7ERU9 68 aa9.55□□□□□ -0.88
VPS33A-205ENST00000541169 Q5W150 140 aa9.53□□□□□ -0.88
VPS33A-205ENST00000541169 C7orf65Q6ZTY9 151 aa9.53□□□□□ -0.88
VPS33A-205ENST00000541169 FAM236DA0A1B0GTK5 79 aa9.52□□□□□ -0.89
VPS33A-205ENST00000541169 FAM236CP0DP71 79 aa9.52□□□□□ -0.89
VPS33A-205ENST00000541169 MT1HP80294 61 aa9.52□□□□□ -0.89
VPS33A-205ENST00000541169 IGKV2D-30A0A075B6S6 120 aa9.47□□□□□ -0.89
VPS33A-205ENST00000541169 IGKV2-30P06310 120 aa9.47□□□□□ -0.89
VPS33A-205ENST00000541169 M0R2T5 61 aa9.45□□□□□ -0.9
VPS33A-205ENST00000541169 UQCRQO14949 82 aa9.42□□□□□ -0.9
VPS33A-205ENST00000541169 TRAV22A0A0B4J277 110 aa9.41□□□□□ -0.9
VPS33A-205ENST00000541169 IMUPQ9GZP8 106 aa9.41□□□□□ -0.9
VPS33A-205ENST00000541169 A0A087WVE0 104 aa9.4□□□□□ -0.9
VPS33A-205ENST00000541169 ATOX1O00244 68 aa9.38□□□□□ -0.91
VPS33A-205ENST00000541169 LOC101927531A0A1B0GV80 90 aa9.35□□□□□ -0.91
VPS33A-205ENST00000541169 SCGB1A1P11684 91 aa9.3□□□□□ -0.92
VPS33A-205ENST00000541169 KRTAP10-6P60371 365 aaPredicted RBP9.29□□□□□ -0.92
VPS33A-205ENST00000541169 H1FX-AS1Q4G0G2 97 aa9.29□□□□□ -0.92
VPS33A-205ENST00000541169 OCR1Q9BZK8 76 aa9.28□□□□□ -0.92
VPS33A-205ENST00000541169 CYP4F30PQ9H0H9 118 aa9.28□□□□□ -0.92
VPS33A-205ENST00000541169 H0Y9P7 68 aa9.27□□□□□ -0.93
VPS33A-205ENST00000541169 LORP23490 312 aaPredicted RBP9.27□□□□□ -0.93
VPS33A-205ENST00000541169 MP68P56378 58 aa9.26□□□□□ -0.93
VPS33A-205ENST00000541169 C5orf47Q569G3 176 aa9.26□□□□□ -0.93
VPS33A-205ENST00000541169 C4orf26Q17RF5 130 aa9.25□□□□□ -0.93
VPS33A-205ENST00000541169 MT-ATP8P03928 68 aa9.24□□□□□ -0.93
VPS33A-205ENST00000541169 FLGP20930 4061 aaPredicted RBP9.24□□□□□ -0.93
VPS33A-205ENST00000541169 H3BPC8 53 aa9.21□□□□□ -0.94
VPS33A-205ENST00000541169 SMIM20Q8N5G0 67 aa9.21□□□□□ -0.94
VPS33A-205ENST00000541169 C1orf64Q8NEQ6 169 aa9.2□□□□□ -0.94
VPS33A-205ENST00000541169 LINC00208Q96KT6 92 aa9.16□□□□□ -0.94
VPS33A-205ENST00000541169 FAM236AA0A1B0GUQ0 79 aa9.12□□□□□ -0.95
VPS33A-205ENST00000541169 FAM236BA0A1B0GV22 79 aa9.12□□□□□ -0.95
VPS33A-205ENST00000541169 TRAV7A0A075B6U4 112 aa9.08□□□□□ -0.96
VPS33A-205ENST00000541169 KRTAP3-1Q9BYR8 98 aa9.08□□□□□ -0.96
VPS33A-205ENST00000541169 KRTAP9-8Q9BYQ0 159 aa9.07□□□□□ -0.96
VPS33A-205ENST00000541169 KRTAP9-2Q9BYQ4 174 aa9.06□□□□□ -0.96
VPS33A-205ENST00000541169 A8MUN3 132 aa9.05□□□□□ -0.96
VPS33A-205ENST00000541169 S4R3F8 94 aa9.04□□□□□ -0.96
VPS33A-205ENST00000541169 KLKP1Q107X0 134 aa8.99□□□□□ -0.97
VPS33A-205ENST00000541169 CSAG1Q6PB30 78 aa8.98□□□□□ -0.97
VPS33A-205ENST00000541169 MT2AP02795 61 aa8.97□□□□□ -0.97
VPS33A-205ENST00000541169 LCA10Q71F78 164 aa8.94□□□□□ -0.98
VPS33A-205ENST00000541169 KRTAP10-10P60014 251 aa8.93□□□□□ -0.98
VPS33A-205ENST00000541169 SERP2Q8N6R1 65 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms