RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 SZT2Q5T011 3432 aa5.46□□□□□ -1.53
COL4A6-208ENST00000538570 UTP20O75691 2785 aaKnown RBP5.46□□□□□ -1.54
COL4A6-208ENST00000538570 ADGRG4Q8IZF6 3080 aa5.46□□□□□ -1.54
COL4A6-208ENST00000538570 CELSR3Q9NYQ7 3312 aa5.46□□□□□ -1.54
COL4A6-208ENST00000538570 LAMA1P25391 3075 aa5.46□□□□□ -1.54
COL4A6-208ENST00000538570 REV3LO60673 3130 aa5.45□□□□□ -1.54
COL4A6-208ENST00000538570 DMXL2Q8TDJ6 3036 aa5.45□□□□□ -1.54
COL4A6-208ENST00000538570 NIPBLQ6KC79 2804 aaeCLIP5.44□□□□□ -1.54
COL4A6-208ENST00000538570 KMT2BQ9UMN6 2715 aaPredicted RBP5.43□□□□□ -1.54
COL4A6-208ENST00000538570 TENM4Q6N022 2769 aa5.43□□□□□ -1.54
COL4A6-208ENST00000538570 NBEAQ8NFP9 2946 aa5.42□□□□□ -1.54
COL4A6-208ENST00000538570 BOD1L1Q8NFC6 3051 aa5.42□□□□□ -1.54
COL4A6-208ENST00000538570 FREM2Q5SZK8 3169 aa5.42□□□□□ -1.54
COL4A6-208ENST00000538570 VCANP13611 3396 aa5.41□□□□□ -1.54
COL4A6-208ENST00000538570 APCP25054 2843 aa5.4□□□□□ -1.54
COL4A6-208ENST00000538570 ZZEF1O43149 2961 aa5.39□□□□□ -1.55
COL4A6-208ENST00000538570 DNAH14Q0VDD8 3507 aa5.38□□□□□ -1.55
COL4A6-208ENST00000538570 LRBAP50851 2863 aa5.38□□□□□ -1.55
COL4A6-208ENST00000538570 H0YAA0 97 aa5.38□□□□□ -1.55
COL4A6-208ENST00000538570 KRTAP21-3Q3LHN1 58 aa5.37□□□□□ -1.55
COL4A6-208ENST00000538570 ASH1LQ9NR48 2969 aaKnown RBP5.36□□□□□ -1.55
COL4A6-208ENST00000538570 KRTAP10-8P60410 259 aa5.35□□□□□ -1.55
COL4A6-208ENST00000538570 USP34Q70CQ2 3546 aa5.34□□□□□ -1.55
COL4A6-208ENST00000538570 CELSR2Q9HCU4 2923 aa5.34□□□□□ -1.55
COL4A6-208ENST00000538570 EYSQ5T1H1 3165 aa5.33□□□□□ -1.56
COL4A6-208ENST00000538570 ZANQ9Y493 2812 aa5.31□□□□□ -1.56
COL4A6-208ENST00000538570 COL6A3P12111 3177 aa5.31□□□□□ -1.56
COL4A6-208ENST00000538570 DCHS2Q6V1P9 2916 aa5.29□□□□□ -1.56
COL4A6-208ENST00000538570 CRYBG3Q68DQ2 2970 aa5.27□□□□□ -1.57
COL4A6-208ENST00000538570 TNRC18O15417 2968 aaPredicted RBP5.27□□□□□ -1.57
COL4A6-208ENST00000538570 XP32Q5T750 250 aa5.26□□□□□ -1.57
COL4A6-208ENST00000538570 A0A1B0GVY2 172 aa5.23□□□□□ -1.57
COL4A6-208ENST00000538570 DMXL1Q9Y485 3027 aa5.22□□□□□ -1.57
COL4A6-208ENST00000538570 CFAP47Q6ZTR5 3102 aa5.21□□□□□ -1.57
COL4A6-208ENST00000538570 KRTAP1-4P0C5Y4 121 aa5.21□□□□□ -1.58
COL4A6-208ENST00000538570 HRNRQ86YZ3 2850 aaPredicted RBP5.18□□□□□ -1.58
COL4A6-208ENST00000538570 NF1P21359 2839 aa5.16□□□□□ -1.58
COL4A6-208ENST00000538570 PRO2289Q9P1D8 64 aa5.14□□□□□ -1.59
COL4A6-208ENST00000538570 TPRXLQ17RH7 258 aa5.14□□□□□ -1.59
COL4A6-208ENST00000538570 TENM3Q9P273 2699 aa5.14□□□□□ -1.59
COL4A6-208ENST00000538570 FBN2P35556 2912 aa5.14□□□□□ -1.59
COL4A6-208ENST00000538570 KRTAP10-10P60014 251 aa5.13□□□□□ -1.59
COL4A6-208ENST00000538570 SPTBN5Q9NRC6 3674 aaKnown RBP5.1□□□□□ -1.59
COL4A6-208ENST00000538570 MYO15AQ9UKN7 3530 aa5.09□□□□□ -1.59
COL4A6-208ENST00000538570 SPEGQ15772 3267 aa5.08□□□□□ -1.6
COL4A6-208ENST00000538570 LOC400499M0QZD8 3231 aa5.07□□□□□ -1.6
COL4A6-208ENST00000538570 TENM1Q9UKZ4 2725 aa5.07□□□□□ -1.6
COL4A6-208ENST00000538570 MXRA5Q9NR99 2828 aa5.05□□□□□ -1.6
COL4A6-208ENST00000538570 KRTAP13-3Q3SY46 172 aa5.04□□□□□ -1.6
COL4A6-208ENST00000538570 INE1O15225 51 aa5.03□□□□□ -1.6
COL4A6-208ENST00000538570 TENM2Q9NT68 2774 aa5.01□□□□□ -1.61
COL4A6-208ENST00000538570 KRTAP15-1Q3LI76 137 aa5□□□□□ -1.61
COL4A6-208ENST00000538570 KRTAP12-2P59991 146 aa4.99□□□□□ -1.61
COL4A6-208ENST00000538570 WDFY3Q8IZQ1 3526 aa4.98□□□□□ -1.61
COL4A6-208ENST00000538570 DCHS1Q96JQ0 3298 aa4.98□□□□□ -1.61
COL4A6-208ENST00000538570 CELSR1Q9NYQ6 3014 aa4.98□□□□□ -1.61
COL4A6-208ENST00000538570 PKD1L1Q8TDX9 2849 aa4.94□□□□□ -1.62
COL4A6-208ENST00000538570 KRTAP13-4Q3LI77 160 aa4.91□□□□□ -1.62
COL4A6-208ENST00000538570 KRTAP12-1P59990 96 aa4.86□□□□□ -1.63
COL4A6-208ENST00000538570 PDZD2O15018 2839 aa4.86□□□□□ -1.63
COL4A6-208ENST00000538570 TGP01266 2768 aa4.85□□□□□ -1.63
COL4A6-208ENST00000538570 RELNP78509 3460 aa4.85□□□□□ -1.63
COL4A6-208ENST00000538570 VWFP04275 2813 aa4.82□□□□□ -1.64
COL4A6-208ENST00000538570 ASPMQ8IZT6 3477 aa4.81□□□□□ -1.64
COL4A6-208ENST00000538570 FBN1P35555 2871 aaKnown RBP4.78□□□□□ -1.64
COL4A6-208ENST00000538570 OTOGQ6ZRI0 2925 aa4.77□□□□□ -1.65
COL4A6-208ENST00000538570 CSMD1Q96PZ7 3565 aa4.76□□□□□ -1.65
COL4A6-208ENST00000538570 KRTAP23-1A1A580 65 aa4.75□□□□□ -1.65
COL4A6-208ENST00000538570 ZFHX4Q86UP3 3567 aa4.72□□□□□ -1.65
COL4A6-208ENST00000538570 KRTAP3-1Q9BYR8 98 aa4.71□□□□□ -1.66
COL4A6-208ENST00000538570 LAMA5O15230 3695 aa4.7□□□□□ -1.66
COL4A6-208ENST00000538570 DMDP11532 3685 aa4.68□□□□□ -1.66
COL4A6-208ENST00000538570 SRRM2Q9UQ35 2752 aaKnown RBP4.66□□□□□ -1.66
COL4A6-208ENST00000538570 KRTAP10-6P60371 365 aaPredicted RBP4.63□□□□□ -1.67
COL4A6-208ENST00000538570 MUC3AQ02505 3323 aa4.62□□□□□ -1.67
COL4A6-208ENST00000538570 NBPF19A0A087WUL8 3843 aa4.62□□□□□ -1.67
COL4A6-208ENST00000538570 CRCT1Q9UGL9 99 aa4.62□□□□□ -1.67
COL4A6-208ENST00000538570 ZFHX3Q15911 3703 aa4.6□□□□□ -1.67
COL4A6-208ENST00000538570 FBN3Q75N90 2809 aa4.57□□□□□ -1.68
COL4A6-208ENST00000538570 SMG1Q96Q15 3661 aaKnown RBP4.54□□□□□ -1.68
COL4A6-208ENST00000538570 MEGF8Q7Z7M0 2845 aa4.49□□□□□ -1.69
COL4A6-208ENST00000538570 ANK3Q12955 4377 aaKnown RBP4.49□□□□□ -1.69
COL4A6-208ENST00000538570 SPENQ96T58 3664 aaKnown RBP4.48□□□□□ -1.69
COL4A6-208ENST00000538570 KRTAP10-12P60413 245 aa4.47□□□□□ -1.69
COL4A6-208ENST00000538570 SVEP1Q4LDE5 3571 aa4.47□□□□□ -1.69
COL4A6-208ENST00000538570 COL7A1Q02388 2944 aa4.46□□□□□ -1.7
COL4A6-208ENST00000538570 KRTAP3-2Q9BYR7 98 aa4.43□□□□□ -1.7
COL4A6-208ENST00000538570 MT1HL1P0DM35 61 aa4.43□□□□□ -1.7
COL4A6-208ENST00000538570 CSMD2Q7Z408 3487 aa4.43□□□□□ -1.7
COL4A6-208ENST00000538570 KRTAP3-3Q9BYR6 98 aa4.39□□□□□ -1.71
COL4A6-208ENST00000538570 TRRAPQ9Y4A5 3859 aa4.39□□□□□ -1.71
COL4A6-208ENST00000538570 CUBNO60494 3623 aa4.37□□□□□ -1.71
COL4A6-208ENST00000538570 KRTAP12-3P60328 96 aa4.35□□□□□ -1.71
COL4A6-208ENST00000538570 KRTAP10-4P60372 401 aaPredicted RBP4.34□□□□□ -1.71
COL4A6-208ENST00000538570 LCE3AQ5TA76 89 aa4.29□□□□□ -1.72
COL4A6-208ENST00000538570 BSNQ9UPA5 3926 aa4.27□□□□□ -1.73
COL4A6-208ENST00000538570 KRTAP4-5Q9BYR2 181 aa4.26□□□□□ -1.73
COL4A6-208ENST00000538570 HUWE1Q7Z6Z7 4374 aaKnown RBP4.21□□□□□ -1.74
COL4A6-208ENST00000538570 KRTAP10-5P60370 271 aa4.17□□□□□ -1.74
COL4A6-208ENST00000538570 VPS13CQ709C8 3753 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms