RNA–Protein interactions for RNA: ENST00000530748.5

CTNND1-227, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-227ENST00000530748 LAMA1P25391 3075 aa4.38□□□□□ -1.71
CTNND1-227ENST00000530748 NOTCH1P46531 2555 aa4.38□□□□□ -1.71
CTNND1-227ENST00000530748 VCANP13611 3396 aa4.36□□□□□ -1.71
CTNND1-227ENST00000530748 STAB2Q8WWQ8 2551 aa4.36□□□□□ -1.71
CTNND1-227ENST00000530748 BAHCC1Q9P281 2608 aa4.36□□□□□ -1.71
CTNND1-227ENST00000530748 IGSF10Q6WRI0 2623 aa4.36□□□□□ -1.71
CTNND1-227ENST00000530748 ZZEF1O43149 2961 aa4.33□□□□□ -1.72
CTNND1-227ENST00000530748 KMT2BQ9UMN6 2715 aaPredicted RBP4.33□□□□□ -1.72
CTNND1-227ENST00000530748 SZT2Q5T011 3432 aa4.33□□□□□ -1.72
CTNND1-227ENST00000530748 UBR5O95071 2799 aaPredicted RBP4.33□□□□□ -1.72
CTNND1-227ENST00000530748 FRYLO94915 3013 aa4.31□□□□□ -1.72
CTNND1-227ENST00000530748 ITPR1Q14643 2758 aa4.3□□□□□ -1.72
CTNND1-227ENST00000530748 COL6A3P12111 3177 aa4.27□□□□□ -1.73
CTNND1-227ENST00000530748 ATMQ13315 3056 aa4.27□□□□□ -1.73
CTNND1-227ENST00000530748 LRBAP50851 2863 aa4.26□□□□□ -1.73
CTNND1-227ENST00000530748 ITPR2Q14571 2701 aa4.25□□□□□ -1.73
CTNND1-227ENST00000530748 TACC2O95359 2948 aa4.25□□□□□ -1.73
CTNND1-227ENST00000530748 REV3LO60673 3130 aa4.24□□□□□ -1.73
CTNND1-227ENST00000530748 ADGRG4Q8IZF6 3080 aa4.24□□□□□ -1.73
CTNND1-227ENST00000530748 BOD1L1Q8NFC6 3051 aa4.23□□□□□ -1.73
CTNND1-227ENST00000530748 DMXL2Q8TDJ6 3036 aa4.23□□□□□ -1.73
CTNND1-227ENST00000530748 NSD1Q96L73 2696 aaPredicted RBP4.22□□□□□ -1.73
CTNND1-227ENST00000530748 COL12A1Q99715 3063 aa4.21□□□□□ -1.73
CTNND1-227ENST00000530748 SPEGQ15772 3267 aa4.21□□□□□ -1.73
CTNND1-227ENST00000530748 UTP20O75691 2785 aaKnown RBP4.2□□□□□ -1.74
CTNND1-227ENST00000530748 ASH1LQ9NR48 2969 aaKnown RBP4.2□□□□□ -1.74
CTNND1-227ENST00000530748 TNRC18O15417 2968 aaPredicted RBP4.2□□□□□ -1.74
CTNND1-227ENST00000530748 CFAP47Q6ZTR5 3102 aa4.19□□□□□ -1.74
CTNND1-227ENST00000530748 KRTAP12-2P59991 146 aa4.19□□□□□ -1.74
CTNND1-227ENST00000530748 APCP25054 2843 aa4.18□□□□□ -1.74
CTNND1-227ENST00000530748 HIVEP1P15822 2718 aa4.18□□□□□ -1.74
CTNND1-227ENST00000530748 FLNCQ14315 2725 aa4.18□□□□□ -1.74
CTNND1-227ENST00000530748 SPTBN5Q9NRC6 3674 aaKnown RBP4.17□□□□□ -1.74
CTNND1-227ENST00000530748 USP34Q70CQ2 3546 aa4.14□□□□□ -1.75
CTNND1-227ENST00000530748 KRTAP13-4Q3LI77 160 aa4.14□□□□□ -1.75
CTNND1-227ENST00000530748 CRYBG3Q68DQ2 2970 aa4.12□□□□□ -1.75
CTNND1-227ENST00000530748 EYSQ5T1H1 3165 aa4.11□□□□□ -1.75
CTNND1-227ENST00000530748 CELSR2Q9HCU4 2923 aa4.09□□□□□ -1.76
CTNND1-227ENST00000530748 HRNRQ86YZ3 2850 aaPredicted RBP4.08□□□□□ -1.76
CTNND1-227ENST00000530748 KRTAP12-1P59990 96 aa4.08□□□□□ -1.76
CTNND1-227ENST00000530748 DMXL1Q9Y485 3027 aa4.06□□□□□ -1.76
CTNND1-227ENST00000530748 MYO15AQ9UKN7 3530 aa4.06□□□□□ -1.76
CTNND1-227ENST00000530748 KRTAP3-1Q9BYR8 98 aa4.05□□□□□ -1.76
CTNND1-227ENST00000530748 NIPBLQ6KC79 2804 aaeCLIP4.04□□□□□ -1.761e-6■□□□□ 9
CTNND1-227ENST00000530748 DCHS2Q6V1P9 2916 aa4.03□□□□□ -1.76
CTNND1-227ENST00000530748 DCHS1Q96JQ0 3298 aa4.03□□□□□ -1.76
CTNND1-227ENST00000530748 TENM4Q6N022 2769 aa4.03□□□□□ -1.76
CTNND1-227ENST00000530748 ZANQ9Y493 2812 aa4.02□□□□□ -1.77
CTNND1-227ENST00000530748 LOC400499M0QZD8 3231 aa4.01□□□□□ -1.77
CTNND1-227ENST00000530748 ANK3Q12955 4377 aaKnown RBP4□□□□□ -1.77
CTNND1-227ENST00000530748 ALMS1Q8TCU4 4167 aa4□□□□□ -1.77
CTNND1-227ENST00000530748 WDFY3Q8IZQ1 3526 aa3.98□□□□□ -1.77
CTNND1-227ENST00000530748 KRTAP15-1Q3LI76 137 aa3.97□□□□□ -1.77
CTNND1-227ENST00000530748 CSMD1Q96PZ7 3565 aa3.96□□□□□ -1.78
CTNND1-227ENST00000530748 FBN2P35556 2912 aa3.96□□□□□ -1.78
CTNND1-227ENST00000530748 KRTAP10-6P60371 365 aaPredicted RBP3.93□□□□□ -1.78
CTNND1-227ENST00000530748 ZFHX4Q86UP3 3567 aa3.92□□□□□ -1.78
CTNND1-227ENST00000530748 NF1P21359 2839 aa3.89□□□□□ -1.79
CTNND1-227ENST00000530748 SMG1Q96Q15 3661 aaKnown RBP3.87□□□□□ -1.79
CTNND1-227ENST00000530748 RELNP78509 3460 aa3.87□□□□□ -1.79
CTNND1-227ENST00000530748 MT1HL1P0DM35 61 aa3.86□□□□□ -1.79
CTNND1-227ENST00000530748 CELSR1Q9NYQ6 3014 aa3.86□□□□□ -1.79
CTNND1-227ENST00000530748 HUWE1Q7Z6Z7 4374 aaKnown RBP3.86□□□□□ -1.79
CTNND1-227ENST00000530748 ZFHX3Q15911 3703 aa3.86□□□□□ -1.79
CTNND1-227ENST00000530748 TENM2Q9NT68 2774 aa3.86□□□□□ -1.79
CTNND1-227ENST00000530748 TENM1Q9UKZ4 2725 aa3.85□□□□□ -1.79
CTNND1-227ENST00000530748 ASPMQ8IZT6 3477 aa3.85□□□□□ -1.79
CTNND1-227ENST00000530748 MXRA5Q9NR99 2828 aa3.85□□□□□ -1.79
CTNND1-227ENST00000530748 TGP01266 2768 aa3.84□□□□□ -1.8
CTNND1-227ENST00000530748 CRCT1Q9UGL9 99 aa3.83□□□□□ -1.8
CTNND1-227ENST00000530748 INE1O15225 51 aa3.83□□□□□ -1.8
CTNND1-227ENST00000530748 TENM3Q9P273 2699 aa3.81□□□□□ -1.8
CTNND1-227ENST00000530748 KRTAP10-12P60413 245 aa3.8□□□□□ -1.8
CTNND1-227ENST00000530748 KRTAP3-3Q9BYR6 98 aa3.8□□□□□ -1.8
CTNND1-227ENST00000530748 KRTAP3-2Q9BYR7 98 aa3.79□□□□□ -1.8
CTNND1-227ENST00000530748 KRTAP10-4P60372 401 aaPredicted RBP3.77□□□□□ -1.81
CTNND1-227ENST00000530748 NBPF19A0A087WUL8 3843 aa3.76□□□□□ -1.81
CTNND1-227ENST00000530748 DMDP11532 3685 aa3.76□□□□□ -1.81
CTNND1-227ENST00000530748 LAMA5O15230 3695 aa3.76□□□□□ -1.81
CTNND1-227ENST00000530748 SVEP1Q4LDE5 3571 aa3.73□□□□□ -1.81
CTNND1-227ENST00000530748 PKD1L1Q8TDX9 2849 aa3.72□□□□□ -1.81
CTNND1-227ENST00000530748 PDZD2O15018 2839 aa3.72□□□□□ -1.81
CTNND1-227ENST00000530748 SPENQ96T58 3664 aaKnown RBP3.71□□□□□ -1.82
CTNND1-227ENST00000530748 KRTAP4-5Q9BYR2 181 aa3.71□□□□□ -1.82
CTNND1-227ENST00000530748 KRTAP23-1A1A580 65 aa3.7□□□□□ -1.82
CTNND1-227ENST00000530748 VWFP04275 2813 aa3.69□□□□□ -1.82
CTNND1-227ENST00000530748 AKAP9Q99996 3911 aa3.69□□□□□ -1.82
CTNND1-227ENST00000530748 KRTAP12-3P60328 96 aa3.66□□□□□ -1.82
CTNND1-227ENST00000530748 LCE3AQ5TA76 89 aa3.65□□□□□ -1.82
CTNND1-227ENST00000530748 DNAH2Q9P225 4427 aa3.62□□□□□ -1.83
CTNND1-227ENST00000530748 FBN1P35555 2871 aaKnown RBP3.6□□□□□ -1.83
CTNND1-227ENST00000530748 BSNQ9UPA5 3926 aa3.6□□□□□ -1.83
CTNND1-227ENST00000530748 KRTAP8-1Q8IUC2 63 aa3.6□□□□□ -1.83
CTNND1-227ENST00000530748 LORP23490 312 aaPredicted RBP3.6□□□□□ -1.83
CTNND1-227ENST00000530748 SRRM2Q9UQ35 2752 aaKnown RBP3.59□□□□□ -1.83
CTNND1-227ENST00000530748 DNAH9Q9NYC9 4486 aa3.57□□□□□ -1.84
CTNND1-227ENST00000530748 OTOGQ6ZRI0 2925 aa3.57□□□□□ -1.84
CTNND1-227ENST00000530748 CUBNO60494 3623 aa3.57□□□□□ -1.84
CTNND1-227ENST00000530748 DNAH3Q8TD57 4116 aa3.54□□□□□ -1.84
CTNND1-227ENST00000530748 CSMD2Q7Z408 3487 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms