RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PIEZO1Q92508 2521 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 TNXBP22105 4242 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 PHGR1C9JFL3 82 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 H3BUX3 64 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 RHPN1-AS1Q9BWJ2 59 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 SPRR2GQ9BYE4 73 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 TTTY10Q9BZA0 68 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 NCOR1O75376 2440 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 ACANP16112 2415 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 PTPN13Q12923 2485 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 TNRC18O15417 2968 aaPredicted RBP0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 STAB1Q9NY15 2570 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 AKAP13Q12802 2813 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 HRNRQ86YZ3 2850 aaPredicted RBP0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 CREBBPQ92793 2442 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 CEP290O15078 2479 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 PKD1L2Q7Z442 2459 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 SMR3BP02814 79 aaPredicted RBP0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 DEFB1P60022 68 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 DEFB136Q30KP8 78 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 KRTAP19-5Q3LI72 72 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 TMEM167AQ8TBQ9 72 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 TRIOO75962 3097 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 WNK1Q9H4A3 2382 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 RANBP2P49792 3224 aaKnown RBP0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 SPTA1P02549 2419 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 HIVEP3Q5T1R4 2406 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 CHD6Q8TD26 2715 aa0.05□□□□□ -2.4
RNU4-54P-201ENST00000516428 SPTBN4Q9H254 2564 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 APC2O95996 2303 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 NBASA2RRP1 2371 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 SONP18583 2426 aaKnown RBP0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 UBR5O95071 2799 aaPredicted RBP0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 NCOR2Q9Y618 2525 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 H3BSH0 61 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 RPS29P62273 56 aaKnown RBP0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 MT1HP80294 61 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 DEFB124Q8NES8 71 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 DEFB104AQ8WTQ1 72 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 CHD8Q9HCK8 2581 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 COL6A5A8TX70 2615 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 ATRQ13535 2644 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 UNC79Q9P2D8 2635 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 ACACAQ13085 2346 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 CSMD3Q7Z407 3707 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 COL6A3P12111 3177 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 PKD1L1Q8TDX9 2849 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 CACNA1AO00555 2505 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 ZFYVE26Q68DK2 2539 aa0.04□□□□□ -2.4
RNU4-54P-201ENST00000516428 COL7A1Q02388 2944 aa0.03□□□□□ -2.4
RNU4-54P-201ENST00000516428 IGSF10Q6WRI0 2623 aa0.03□□□□□ -2.4
RNU4-54P-201ENST00000516428 HECTD1Q9ULT8 2610 aa0.03□□□□□ -2.4
RNU4-54P-201ENST00000516428 MAP1BP46821 2468 aaKnown RBP0.03□□□□□ -2.4
RNU4-54P-201ENST00000516428 MTORP42345 2549 aa0.03□□□□□ -2.4
RNU4-54P-201ENST00000516428 MT1EP04732 61 aa0.03□□□□□ -2.4
RNU4-54P-201ENST00000516428 RPL39P5Q59GN2 51 aa0.03□□□□□ -2.4
RNU4-54P-201ENST00000516428 SETD2Q9BYW2 2564 aaPredicted RBP0.03□□□□□ -2.4
RNU4-54P-201ENST00000516428 FLNBO75369 2602 aaKnown RBP0.03□□□□□ -2.4
RNU4-54P-201ENST00000516428 NSD1Q96L73 2696 aaPredicted RBP0.03□□□□□ -2.4
RNU4-54P-201ENST00000516428 ALMS1Q8TCU4 4167 aa0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 ZANQ9Y493 2812 aa0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 ACACBO00763 2458 aa0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 CELSR3Q9NYQ7 3312 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 TGP01266 2768 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 PDZD2O15018 2839 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 FRYQ5TBA9 3013 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 DMBT1Q9UGM3 2413 aaPredicted RBP0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 HTTP42858 3142 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 A0A096LNI7 61 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 HTN1P15515 57 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 DEFB133Q30KQ1 61 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 MT1LQ93083 61 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 TEP1Q99973 2627 aaKnown RBP0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 GCN1Q92616 2671 aaKnown RBP0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 MACF1Q9UPN3 7388 aaKnown RBP0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 FRAS1Q86XX4 4008 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 FLNCQ14315 2725 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 TENM2Q9NT68 2774 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 NF1P21359 2839 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 TACC2O95359 2948 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 ZZEF1O43149 2961 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 COL12A1Q99715 3063 aa0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 SETXQ7Z333 2677 aaKnown RBP0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 CHD7Q9P2D1 2997 aa0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 DMXL1Q9Y485 3027 aa0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 FAM186AA6NE01 2351 aa0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 CCDC168Q8NDH2 2452 aa0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 ANKHD1Q8IWZ3 2542 aaKnown RBP0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 DEFB108AA8MXU0 73 aa0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 CD52P31358 61 aa0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 MT1XP80297 61 aa0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 KRTAP6-1Q3LI64 71 aa0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 KRTAP19-7Q3SYF9 63 aa0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 SRRM2Q9UQ35 2752 aaKnown RBP0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 LRP1Q07954 4544 aaKnown RBP0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 SYNE2Q8WXH0 6885 aaKnown RBP0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 ANKRD11Q6UB99 2663 aaPredicted RBP0□□□□□ -2.41
RNU4-54P-201ENST00000516428 NBEAL2Q6ZNJ1 2754 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 LAMA1P25391 3075 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 SVEP1Q4LDE5 3571 aa0□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms