RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 KRTAP13-1Q8IUC0 172 aa9.41□□□□□ -0.9
PCDHA1-203ENST00000504120 EYSQ5T1H1 3165 aa9.41□□□□□ -0.9
PCDHA1-203ENST00000504120 REV3LO60673 3130 aa9.38□□□□□ -0.91
PCDHA1-203ENST00000504120 H3BS24 57 aa9.37□□□□□ -0.91
PCDHA1-203ENST00000504120 PLAC4Q8WY50 150 aa9.36□□□□□ -0.91
PCDHA1-203ENST00000504120 KRTAP13-2Q52LG2 175 aa9.35□□□□□ -0.91
PCDHA1-203ENST00000504120 ZZEF1O43149 2961 aa9.35□□□□□ -0.91
PCDHA1-203ENST00000504120 KRTAP21-3Q3LHN1 58 aa9.34□□□□□ -0.91
PCDHA1-203ENST00000504120 DMXL1Q9Y485 3027 aa9.34□□□□□ -0.91
PCDHA1-203ENST00000504120 STAB2Q8WWQ8 2551 aa9.33□□□□□ -0.92
PCDHA1-203ENST00000504120 FREM2Q5SZK8 3169 aa9.32□□□□□ -0.92
PCDHA1-203ENST00000504120 NIPBLQ6KC79 2804 aaeCLIP9.29□□□□□ -0.92
PCDHA1-203ENST00000504120 HRNRQ86YZ3 2850 aaPredicted RBP9.28□□□□□ -0.92
PCDHA1-203ENST00000504120 ZANQ9Y493 2812 aa9.24□□□□□ -0.93
PCDHA1-203ENST00000504120 A6NN06 94 aa9.23□□□□□ -0.93
PCDHA1-203ENST00000504120 USP34Q70CQ2 3546 aa9.22□□□□□ -0.93
PCDHA1-203ENST00000504120 A8MUU9 505 aa9.21□□□□□ -0.94
PCDHA1-203ENST00000504120 A8MU10 97 aa9.2□□□□□ -0.94
PCDHA1-203ENST00000504120 KRTAP25-1Q3LHN0 102 aa9.17□□□□□ -0.94
PCDHA1-203ENST00000504120 CELSR2Q9HCU4 2923 aa9.09□□□□□ -0.95
PCDHA1-203ENST00000504120 SPEGQ15772 3267 aa9.07□□□□□ -0.96
PCDHA1-203ENST00000504120 LOC400499M0QZD8 3231 aa9.07□□□□□ -0.96
PCDHA1-203ENST00000504120 C20orf166-AS1Q96NR2 134 aa9.07□□□□□ -0.96
PCDHA1-203ENST00000504120 TENM4Q6N022 2769 aa9.06□□□□□ -0.96
PCDHA1-203ENST00000504120 ASH1LQ9NR48 2969 aaKnown RBP9.04□□□□□ -0.96
PCDHA1-203ENST00000504120 DCHS2Q6V1P9 2916 aa9.02□□□□□ -0.97
PCDHA1-203ENST00000504120 CFAP47Q6ZTR5 3102 aa9.01□□□□□ -0.97
PCDHA1-203ENST00000504120 NF1P21359 2839 aa8.95□□□□□ -0.98
PCDHA1-203ENST00000504120 FBN2P35556 2912 aa8.93□□□□□ -0.98
PCDHA1-203ENST00000504120 KRTAP1-4P0C5Y4 121 aa8.92□□□□□ -0.98
PCDHA1-203ENST00000504120 CRYBG3Q68DQ2 2970 aa8.91□□□□□ -0.98
PCDHA1-203ENST00000504120 KRTAP16-1A8MUX0 517 aa8.89□□□□□ -0.99
PCDHA1-203ENST00000504120 TNP1P09430 55 aa8.89□□□□□ -0.99
PCDHA1-203ENST00000504120 MXRA5Q9NR99 2828 aa8.85□□□□□ -0.99
PCDHA1-203ENST00000504120 XP32Q5T750 250 aa8.82□□□□□ -1
PCDHA1-203ENST00000504120 NDUFAF8A1L188 74 aa8.78□□□□□ -1
PCDHA1-203ENST00000504120 MYO15AQ9UKN7 3530 aa8.77□□□□□ -1.01
PCDHA1-203ENST00000504120 PDZD2O15018 2839 aa8.71□□□□□ -1.01
PCDHA1-203ENST00000504120 PP632Q6XCG6 107 aa8.71□□□□□ -1.02
PCDHA1-203ENST00000504120 TPRXLQ17RH7 258 aa8.68□□□□□ -1.02
PCDHA1-203ENST00000504120 C10orf95Q9H7T3 257 aa8.66□□□□□ -1.02
PCDHA1-203ENST00000504120 H0YAA0 97 aa8.65□□□□□ -1.03
PCDHA1-203ENST00000504120 RELNP78509 3460 aa8.64□□□□□ -1.03
PCDHA1-203ENST00000504120 TENM3Q9P273 2699 aa8.62□□□□□ -1.03
PCDHA1-203ENST00000504120 CELSR1Q9NYQ6 3014 aa8.61□□□□□ -1.03
PCDHA1-203ENST00000504120 KRTAP10-8P60410 259 aa8.58□□□□□ -1.04
PCDHA1-203ENST00000504120 A0A1B0GVY2 172 aa8.54□□□□□ -1.04
PCDHA1-203ENST00000504120 KRTAP13-3Q3SY46 172 aa8.54□□□□□ -1.04
PCDHA1-203ENST00000504120 TENM1Q9UKZ4 2725 aa8.5□□□□□ -1.05
PCDHA1-203ENST00000504120 DCHS1Q96JQ0 3298 aa8.5□□□□□ -1.05
PCDHA1-203ENST00000504120 P0C880 135 aa8.47□□□□□ -1.05
PCDHA1-203ENST00000504120 LAMA5O15230 3695 aa8.47□□□□□ -1.05
PCDHA1-203ENST00000504120 OTOGQ6ZRI0 2925 aa8.46□□□□□ -1.05
PCDHA1-203ENST00000504120 TENM2Q9NT68 2774 aa8.46□□□□□ -1.06
PCDHA1-203ENST00000504120 WDFY3Q8IZQ1 3526 aa8.45□□□□□ -1.06
PCDHA1-203ENST00000504120 KRTAP10-10P60014 251 aa8.4□□□□□ -1.06
PCDHA1-203ENST00000504120 DMDP11532 3685 aa8.38□□□□□ -1.07
PCDHA1-203ENST00000504120 MUC3AQ02505 3323 aa8.37□□□□□ -1.07
PCDHA1-203ENST00000504120 ASPMQ8IZT6 3477 aa8.36□□□□□ -1.07
PCDHA1-203ENST00000504120 PRO2289Q9P1D8 64 aa8.33□□□□□ -1.08
PCDHA1-203ENST00000504120 ZFHX4Q86UP3 3567 aa8.31□□□□□ -1.08
PCDHA1-203ENST00000504120 VWFP04275 2813 aa8.28□□□□□ -1.08
PCDHA1-203ENST00000504120 ANK3Q12955 4377 aaKnown RBP8.28□□□□□ -1.08
PCDHA1-203ENST00000504120 TGP01266 2768 aa8.26□□□□□ -1.09
PCDHA1-203ENST00000504120 NBPF19A0A087WUL8 3843 aa8.25□□□□□ -1.09
PCDHA1-203ENST00000504120 PKD1L1Q8TDX9 2849 aa8.22□□□□□ -1.09
PCDHA1-203ENST00000504120 FBN1P35555 2871 aaKnown RBP8.2□□□□□ -1.1
PCDHA1-203ENST00000504120 SMG1Q96Q15 3661 aaKnown RBP8.14□□□□□ -1.11
PCDHA1-203ENST00000504120 KRTAP12-2P59991 146 aa8.12□□□□□ -1.11
PCDHA1-203ENST00000504120 CSMD1Q96PZ7 3565 aa8.07□□□□□ -1.12
PCDHA1-203ENST00000504120 KRTAP13-4Q3LI77 160 aa8.02□□□□□ -1.12
PCDHA1-203ENST00000504120 ZFHX3Q15911 3703 aa8.01□□□□□ -1.13
PCDHA1-203ENST00000504120 KRTAP12-1P59990 96 aa8□□□□□ -1.13
PCDHA1-203ENST00000504120 KRTAP3-1Q9BYR8 98 aa8□□□□□ -1.13
PCDHA1-203ENST00000504120 BSNQ9UPA5 3926 aa7.98□□□□□ -1.13
PCDHA1-203ENST00000504120 SPENQ96T58 3664 aaKnown RBP7.97□□□□□ -1.13
PCDHA1-203ENST00000504120 SVEP1Q4LDE5 3571 aa7.87□□□□□ -1.15
PCDHA1-203ENST00000504120 CSMD2Q7Z408 3487 aa7.85□□□□□ -1.15
PCDHA1-203ENST00000504120 TRRAPQ9Y4A5 3859 aa7.85□□□□□ -1.15
PCDHA1-203ENST00000504120 FBN3Q75N90 2809 aa7.81□□□□□ -1.16
PCDHA1-203ENST00000504120 MEGF8Q7Z7M0 2845 aa7.79□□□□□ -1.16
PCDHA1-203ENST00000504120 KRTAP10-6P60371 365 aaPredicted RBP7.79□□□□□ -1.16
PCDHA1-203ENST00000504120 SRRM2Q9UQ35 2752 aaKnown RBP7.74□□□□□ -1.17
PCDHA1-203ENST00000504120 HUWE1Q7Z6Z7 4374 aaKnown RBP7.71□□□□□ -1.17
PCDHA1-203ENST00000504120 MT1HL1P0DM35 61 aa7.67□□□□□ -1.18
PCDHA1-203ENST00000504120 KRTAP10-4P60372 401 aaPredicted RBP7.64□□□□□ -1.19
PCDHA1-203ENST00000504120 KRTAP15-1Q3LI76 137 aa7.63□□□□□ -1.19
PCDHA1-203ENST00000504120 CUBNO60494 3623 aa7.51□□□□□ -1.21
PCDHA1-203ENST00000504120 KRTAP3-2Q9BYR7 98 aa7.51□□□□□ -1.21
PCDHA1-203ENST00000504120 ALMS1Q8TCU4 4167 aa7.51□□□□□ -1.21
PCDHA1-203ENST00000504120 KRTAP3-3Q9BYR6 98 aa7.5□□□□□ -1.21
PCDHA1-203ENST00000504120 COL7A1Q02388 2944 aa7.5□□□□□ -1.21
PCDHA1-203ENST00000504120 VPS13CQ709C8 3753 aa7.47□□□□□ -1.21
PCDHA1-203ENST00000504120 DNAH9Q9NYC9 4486 aa7.43□□□□□ -1.22
PCDHA1-203ENST00000504120 AKAP9Q99996 3911 aa7.4□□□□□ -1.22
PCDHA1-203ENST00000504120 KRTAP4-5Q9BYR2 181 aa7.34□□□□□ -1.23
PCDHA1-203ENST00000504120 ZNF469Q96JG9 3925 aaPredicted RBP7.34□□□□□ -1.24
PCDHA1-203ENST00000504120 KRTAP10-12P60413 245 aa7.33□□□□□ -1.24
PCDHA1-203ENST00000504120 INE1O15225 51 aa7.24□□□□□ -1.25
PCDHA1-203ENST00000504120 KRTAP23-1A1A580 65 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms