RNA–Protein interactions for RNA: ENST00000503427.5

HMGXB3-202, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,275 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-202ENST00000503427 NOTCH2NLQ7Z3S9 236 aa9.36□□□□□ -0.91
HMGXB3-202ENST00000503427 KRTAP11-1Q8IUC1 163 aa9.35□□□□□ -0.91
HMGXB3-202ENST00000503427 KRTAP7-1Q8IUC3 87 aa9.35□□□□□ -0.91
HMGXB3-202ENST00000503427 M0R2T5 61 aa9.34□□□□□ -0.91
HMGXB3-202ENST00000503427 SPATA8Q6RVD6 105 aa9.3□□□□□ -0.92
HMGXB3-202ENST00000503427 RPS29P62273 56 aaKnown RBP9.29□□□□□ -0.92
HMGXB3-202ENST00000503427 H3BS24 57 aa9.27□□□□□ -0.92
HMGXB3-202ENST00000503427 ZANQ9Y493 2812 aa9.27□□□□□ -0.93
HMGXB3-202ENST00000503427 SPTBN5Q9NRC6 3674 aaKnown RBP9.26□□□□□ -0.93
HMGXB3-202ENST00000503427 KRTAP13-1Q8IUC0 172 aa9.26□□□□□ -0.93
HMGXB3-202ENST00000503427 M0QZ58 72 aa9.21□□□□□ -0.94
HMGXB3-202ENST00000503427 CELSR2Q9HCU4 2923 aa9.21□□□□□ -0.94
HMGXB3-202ENST00000503427 USP34Q70CQ2 3546 aa9.2□□□□□ -0.94
HMGXB3-202ENST00000503427 ASH1LQ9NR48 2969 aaKnown RBP9.19□□□□□ -0.94
HMGXB3-202ENST00000503427 HRNRQ86YZ3 2850 aaPredicted RBP9.19□□□□□ -0.94
HMGXB3-202ENST00000503427 A6NN06 94 aa9.18□□□□□ -0.94
HMGXB3-202ENST00000503427 CFAP47Q6ZTR5 3102 aa9.17□□□□□ -0.94
HMGXB3-202ENST00000503427 ADM2Q7Z4H4 148 aa9.16□□□□□ -0.94
HMGXB3-202ENST00000503427 A0A0A0MQY5 61 aa9.15□□□□□ -0.94
HMGXB3-202ENST00000503427 KRTAP13-2Q52LG2 175 aa9.14□□□□□ -0.95
HMGXB3-202ENST00000503427 DCHS2Q6V1P9 2916 aa9.12□□□□□ -0.95
HMGXB3-202ENST00000503427 SPEGQ15772 3267 aa9.06□□□□□ -0.96
HMGXB3-202ENST00000503427 KRTAP25-1Q3LHN0 102 aa9.02□□□□□ -0.97
HMGXB3-202ENST00000503427 A8MU10 97 aa9□□□□□ -0.97
HMGXB3-202ENST00000503427 NF1P21359 2839 aa9□□□□□ -0.97
HMGXB3-202ENST00000503427 LOC400499M0QZD8 3231 aa8.99□□□□□ -0.97
HMGXB3-202ENST00000503427 FBN2P35556 2912 aa8.95□□□□□ -0.98
HMGXB3-202ENST00000503427 PLAC4Q8WY50 150 aa8.92□□□□□ -0.98
HMGXB3-202ENST00000503427 A8MUU9 505 aa8.89□□□□□ -0.99
HMGXB3-202ENST00000503427 MXRA5Q9NR99 2828 aa8.89□□□□□ -0.99
HMGXB3-202ENST00000503427 DCHS1Q96JQ0 3298 aa8.85□□□□□ -0.99
HMGXB3-202ENST00000503427 C20orf166-AS1Q96NR2 134 aa8.84□□□□□ -0.99
HMGXB3-202ENST00000503427 TENM2Q9NT68 2774 aa8.83□□□□□ -1
HMGXB3-202ENST00000503427 TENM3Q9P273 2699 aa8.82□□□□□ -1
HMGXB3-202ENST00000503427 TENM1Q9UKZ4 2725 aa8.82□□□□□ -1
HMGXB3-202ENST00000503427 KRTAP1-4P0C5Y4 121 aa8.81□□□□□ -1
HMGXB3-202ENST00000503427 MYO15AQ9UKN7 3530 aa8.81□□□□□ -1
HMGXB3-202ENST00000503427 PKD1L1Q8TDX9 2849 aa8.78□□□□□ -1
HMGXB3-202ENST00000503427 KRTAP16-1A8MUX0 517 aa8.72□□□□□ -1.01
HMGXB3-202ENST00000503427 CELSR1Q9NYQ6 3014 aa8.67□□□□□ -1.02
HMGXB3-202ENST00000503427 RELNP78509 3460 aa8.67□□□□□ -1.02
HMGXB3-202ENST00000503427 NDUFAF8A1L188 74 aa8.63□□□□□ -1.03
HMGXB3-202ENST00000503427 PDZD2O15018 2839 aa8.63□□□□□ -1.03
HMGXB3-202ENST00000503427 MUC3AQ02505 3323 aa8.61□□□□□ -1.03
HMGXB3-202ENST00000503427 XP32Q5T750 250 aa8.6□□□□□ -1.03
HMGXB3-202ENST00000503427 TNP1P09430 55 aa8.57□□□□□ -1.04
HMGXB3-202ENST00000503427 OTOGQ6ZRI0 2925 aa8.56□□□□□ -1.04
HMGXB3-202ENST00000503427 ZFHX3Q15911 3703 aa8.54□□□□□ -1.04
HMGXB3-202ENST00000503427 H0YAA0 97 aa8.53□□□□□ -1.04
HMGXB3-202ENST00000503427 TPRXLQ17RH7 258 aa8.52□□□□□ -1.05
HMGXB3-202ENST00000503427 LAMA5O15230 3695 aa8.5□□□□□ -1.05
HMGXB3-202ENST00000503427 NBPF19A0A087WUL8 3843 aa8.5□□□□□ -1.05
HMGXB3-202ENST00000503427 VWFP04275 2813 aa8.49□□□□□ -1.05
HMGXB3-202ENST00000503427 PP632Q6XCG6 107 aa8.45□□□□□ -1.06
HMGXB3-202ENST00000503427 A0A1B0GVY2 172 aa8.45□□□□□ -1.06
HMGXB3-202ENST00000503427 TGP01266 2768 aa8.41□□□□□ -1.06
HMGXB3-202ENST00000503427 C10orf95Q9H7T3 257 aa8.41□□□□□ -1.06
HMGXB3-202ENST00000503427 FBN1P35555 2871 aaKnown RBP8.41□□□□□ -1.06
HMGXB3-202ENST00000503427 WDFY3Q8IZQ1 3526 aa8.4□□□□□ -1.06
HMGXB3-202ENST00000503427 KRTAP13-3Q3SY46 172 aa8.39□□□□□ -1.07
HMGXB3-202ENST00000503427 ASPMQ8IZT6 3477 aa8.39□□□□□ -1.07
HMGXB3-202ENST00000503427 KRTAP10-8P60410 259 aa8.35□□□□□ -1.07
HMGXB3-202ENST00000503427 P0C880 135 aa8.3□□□□□ -1.08
HMGXB3-202ENST00000503427 DMDP11532 3685 aa8.29□□□□□ -1.08
HMGXB3-202ENST00000503427 SMG1Q96Q15 3661 aaKnown RBP8.24□□□□□ -1.09
HMGXB3-202ENST00000503427 SRRM2Q9UQ35 2752 aaKnown RBP8.24□□□□□ -1.09
HMGXB3-202ENST00000503427 ZFHX4Q86UP3 3567 aa8.17□□□□□ -1.1
HMGXB3-202ENST00000503427 FBN3Q75N90 2809 aa8.11□□□□□ -1.11
HMGXB3-202ENST00000503427 ANK3Q12955 4377 aaKnown RBP8.08□□□□□ -1.12
HMGXB3-202ENST00000503427 KRTAP10-10P60014 251 aa8.06□□□□□ -1.12
HMGXB3-202ENST00000503427 CSMD1Q96PZ7 3565 aa8.05□□□□□ -1.12
HMGXB3-202ENST00000503427 CSMD2Q7Z408 3487 aa8.04□□□□□ -1.12
HMGXB3-202ENST00000503427 KRTAP12-2P59991 146 aa7.97□□□□□ -1.13
HMGXB3-202ENST00000503427 PRO2289Q9P1D8 64 aa7.93□□□□□ -1.14
HMGXB3-202ENST00000503427 KRTAP3-1Q9BYR8 98 aa7.91□□□□□ -1.14
HMGXB3-202ENST00000503427 KRTAP12-1P59990 96 aa7.87□□□□□ -1.15
HMGXB3-202ENST00000503427 KRTAP13-4Q3LI77 160 aa7.83□□□□□ -1.16
HMGXB3-202ENST00000503427 MEGF8Q7Z7M0 2845 aa7.82□□□□□ -1.16
HMGXB3-202ENST00000503427 COL7A1Q02388 2944 aa7.78□□□□□ -1.16
HMGXB3-202ENST00000503427 TRRAPQ9Y4A5 3859 aa7.77□□□□□ -1.17
HMGXB3-202ENST00000503427 SPENQ96T58 3664 aaKnown RBP7.76□□□□□ -1.17
HMGXB3-202ENST00000503427 SVEP1Q4LDE5 3571 aa7.73□□□□□ -1.17
HMGXB3-202ENST00000503427 MT1HL1P0DM35 61 aa7.71□□□□□ -1.18
HMGXB3-202ENST00000503427 KRTAP10-6P60371 365 aaPredicted RBP7.7□□□□□ -1.18
HMGXB3-202ENST00000503427 BSNQ9UPA5 3926 aa7.69□□□□□ -1.18
HMGXB3-202ENST00000503427 KRTAP4-5Q9BYR2 181 aa7.67□□□□□ -1.18
HMGXB3-202ENST00000503427 KRTAP10-4P60372 401 aaPredicted RBP7.61□□□□□ -1.19
HMGXB3-202ENST00000503427 HUWE1Q7Z6Z7 4374 aaKnown RBP7.55□□□□□ -1.2
HMGXB3-202ENST00000503427 CUBNO60494 3623 aa7.51□□□□□ -1.21
HMGXB3-202ENST00000503427 KRTAP3-2Q9BYR7 98 aa7.43□□□□□ -1.22
HMGXB3-202ENST00000503427 KRTAP3-3Q9BYR6 98 aa7.42□□□□□ -1.22
HMGXB3-202ENST00000503427 DNHD1Q96M86 4753 aa7.41□□□□□ -1.22
HMGXB3-202ENST00000503427 KRTAP15-1Q3LI76 137 aa7.36□□□□□ -1.23
HMGXB3-202ENST00000503427 ALMS1Q8TCU4 4167 aa7.34□□□□□ -1.23
HMGXB3-202ENST00000503427 VPS13CQ709C8 3753 aa7.28□□□□□ -1.24
HMGXB3-202ENST00000503427 DNAH9Q9NYC9 4486 aa7.26□□□□□ -1.25
HMGXB3-202ENST00000503427 AKAP9Q99996 3911 aa7.14□□□□□ -1.27
HMGXB3-202ENST00000503427 ZNF469Q96JG9 3925 aaPredicted RBP7.13□□□□□ -1.27
HMGXB3-202ENST00000503427 DNAH5Q8TE73 4624 aa7.1□□□□□ -1.27
HMGXB3-202ENST00000503427 INE1O15225 51 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms