RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 MYCBP2O75592 4640 aa12.32□□□□□ -0.44
SMC4-221ENST00000489573 FAT3Q8TDW7 4589 aa12.31□□□□□ -0.44
SMC4-221ENST00000489573 NDUFB1O75438 58 aa12.3□□□□□ -0.44
SMC4-221ENST00000489573 PRR15Q8IV56 129 aa12.3□□□□□ -0.44
SMC4-221ENST00000489573 SCGB1A1P11684 91 aa12.26□□□□□ -0.45
SMC4-221ENST00000489573 TNXBP22105 4242 aa12.26□□□□□ -0.45
SMC4-221ENST00000489573 FAM236AA0A1B0GUQ0 79 aa12.25□□□□□ -0.45
SMC4-221ENST00000489573 FAM236BA0A1B0GV22 79 aa12.25□□□□□ -0.45
SMC4-221ENST00000489573 A0A1B0GVX0 72 aa12.25□□□□□ -0.45
SMC4-221ENST00000489573 KRTAP29-1A8MX34 341 aaPredicted RBP12.24□□□□□ -0.45
SMC4-221ENST00000489573 IGHV6-1A0A0B4J1U7 121 aa12.21□□□□□ -0.46
SMC4-221ENST00000489573 HCG22E2RYF7 251 aa12.19□□□□□ -0.46
SMC4-221ENST00000489573 C8orf17Q9NRJ1 99 aa12.17□□□□□ -0.46
SMC4-221ENST00000489573 MMP24-AS1A0A0U1RRL7 71 aa12.16□□□□□ -0.46
SMC4-221ENST00000489573 RETNLBQ9BQ08 111 aa12.16□□□□□ -0.46
SMC4-221ENST00000489573 WFDC13Q8IUB5 93 aa12.14□□□□□ -0.47
SMC4-221ENST00000489573 DMBT1Q9UGM3 2413 aaPredicted RBP12.13□□□□□ -0.47
SMC4-221ENST00000489573 C8orf87E5RJ46 101 aa12.13□□□□□ -0.47
SMC4-221ENST00000489573 CASC2Q6XLA1 102 aa12.13□□□□□ -0.47
SMC4-221ENST00000489573 NOTCH2NLQ7Z3S9 236 aa12.11□□□□□ -0.47
SMC4-221ENST00000489573 hDV103S1A0JD37 113 aa12.09□□□□□ -0.47
SMC4-221ENST00000489573 ATOX1O00244 68 aa12.09□□□□□ -0.47
SMC4-221ENST00000489573 J3QL48 77 aa12.07□□□□□ -0.48
SMC4-221ENST00000489573 LINC00313P59037 77 aa12.07□□□□□ -0.48
SMC4-221ENST00000489573 FP248Q71RG6 208 aaPredicted RBP12.05□□□□□ -0.48
SMC4-221ENST00000489573 TMEM254Q8TBM7 123 aa12.04□□□□□ -0.48
SMC4-221ENST00000489573 MRPL34Q9BQ48 92 aaKnown RBP12.01□□□□□ -0.49
SMC4-221ENST00000489573 ANAPC13Q9BS18 74 aa12.01□□□□□ -0.49
SMC4-221ENST00000489573 SMIM20Q8N5G0 67 aa11.99□□□□□ -0.49
SMC4-221ENST00000489573 KRTAP16-1A8MUX0 517 aa11.96□□□□□ -0.49
SMC4-221ENST00000489573 OCR1Q9BZK8 76 aa11.96□□□□□ -0.49
SMC4-221ENST00000489573 IGLV7-46A0A075B6I9 117 aa11.95□□□□□ -0.5
SMC4-221ENST00000489573 TRAV7A0A075B6U4 112 aa11.94□□□□□ -0.5
SMC4-221ENST00000489573 C9orf92A6NGG3 77 aa11.93□□□□□ -0.5
SMC4-221ENST00000489573 SERP2Q8N6R1 65 aa11.93□□□□□ -0.5
SMC4-221ENST00000489573 NDUFS5O43920 106 aa11.92□□□□□ -0.5
SMC4-221ENST00000489573 PRR4Q16378 134 aa11.91□□□□□ -0.5
SMC4-221ENST00000489573 PCP4P48539 62 aa11.89□□□□□ -0.51
SMC4-221ENST00000489573 Q8N9P0 234 aaPredicted RBP11.88□□□□□ -0.51
SMC4-221ENST00000489573 TP53AIP1Q9HCN2 124 aa11.87□□□□□ -0.51
SMC4-221ENST00000489573 UQCRQO14949 82 aa11.86□□□□□ -0.51
SMC4-221ENST00000489573 COX7CP15954 63 aa11.86□□□□□ -0.51
SMC4-221ENST00000489573 KRTAP13-3Q3SY46 172 aa11.84□□□□□ -0.51
SMC4-221ENST00000489573 HMCN2Q8NDA2 5059 aa11.81□□□□□ -0.52
SMC4-221ENST00000489573 C20orf166-AS1Q96NR2 134 aa11.79□□□□□ -0.52
SMC4-221ENST00000489573 A8MUU9 505 aa11.77□□□□□ -0.53
SMC4-221ENST00000489573 C5orf47Q569G3 176 aa11.77□□□□□ -0.53
SMC4-221ENST00000489573 TRAV22A0A0B4J277 110 aa11.75□□□□□ -0.53
SMC4-221ENST00000489573 TPRXLQ17RH7 258 aa11.75□□□□□ -0.53
SMC4-221ENST00000489573 CCDC179H3BU77 68 aa11.75□□□□□ -0.53
SMC4-221ENST00000489573 H0Y9P7 68 aa11.73□□□□□ -0.53
SMC4-221ENST00000489573 MP68P56378 58 aa11.72□□□□□ -0.53
SMC4-221ENST00000489573 XP32Q5T750 250 aa11.71□□□□□ -0.53
SMC4-221ENST00000489573 Q75L30 129 aa11.71□□□□□ -0.53
SMC4-221ENST00000489573 C20orf197Q8N268 126 aa11.71□□□□□ -0.53
SMC4-221ENST00000489573 Q5W150 140 aa11.71□□□□□ -0.54
SMC4-221ENST00000489573 UBR4Q5T4S7 5183 aa11.66□□□□□ -0.54
SMC4-221ENST00000489573 A0A0U1RQV1 116 aa11.66□□□□□ -0.54
SMC4-221ENST00000489573 H3BPC8 53 aa11.66□□□□□ -0.54
SMC4-221ENST00000489573 ZCCHC13Q8WW36 166 aaKnown RBP11.66□□□□□ -0.54
SMC4-221ENST00000489573 RPL37P61927 97 aaKnown RBP11.64□□□□□ -0.55
SMC4-221ENST00000489573 LINC00208Q96KT6 92 aa11.64□□□□□ -0.55
SMC4-221ENST00000489573 SNURFQ9Y675 71 aa11.64□□□□□ -0.55
SMC4-221ENST00000489573 KLKP1Q107X0 134 aa11.62□□□□□ -0.55
SMC4-221ENST00000489573 C1orf64Q8NEQ6 169 aa11.61□□□□□ -0.55
SMC4-221ENST00000489573 ATP11AUNQ6ZP68 121 aa11.56□□□□□ -0.56
SMC4-221ENST00000489573 LOC101927531A0A1B0GV80 90 aa11.55□□□□□ -0.56
SMC4-221ENST00000489573 CYSTM1Q9H1C7 97 aa11.55□□□□□ -0.56
SMC4-221ENST00000489573 IGKV2-30P06310 120 aa11.51□□□□□ -0.57
SMC4-221ENST00000489573 NDUFC1O43677 76 aa11.49□□□□□ -0.57
SMC4-221ENST00000489573 IGKV2D-30A0A075B6S6 120 aa11.47□□□□□ -0.57
SMC4-221ENST00000489573 CYP4F30PQ9H0H9 118 aa11.47□□□□□ -0.57
SMC4-221ENST00000489573 LRP2P98164 4655 aa11.47□□□□□ -0.57
SMC4-221ENST00000489573 LPAP08519 4548 aa11.45□□□□□ -0.58
SMC4-221ENST00000489573 H7BZZ5 65 aa11.45□□□□□ -0.58
SMC4-221ENST00000489573 C7orf65Q6ZTY9 151 aa11.44□□□□□ -0.58
SMC4-221ENST00000489573 PCOTHQ58A44 107 aa11.42□□□□□ -0.58
SMC4-221ENST00000489573 SPINK7P58062 85 aa11.37□□□□□ -0.59
SMC4-221ENST00000489573 SEC61BP60468 96 aaKnown RBP11.37□□□□□ -0.59
SMC4-221ENST00000489573 TMEM258P61165 79 aa11.33□□□□□ -0.6
SMC4-221ENST00000489573 RNF213Q63HN8 5207 aa11.3□□□□□ -0.6
SMC4-221ENST00000489573 HRES1P13985 223 aa11.28□□□□□ -0.6
SMC4-221ENST00000489573 SPANXA2-OT1Q8N9U9 137 aa11.28□□□□□ -0.6
SMC4-221ENST00000489573 FAM236DA0A1B0GTK5 79 aa11.25□□□□□ -0.61
SMC4-221ENST00000489573 FAM236CP0DP71 79 aa11.25□□□□□ -0.61
SMC4-221ENST00000489573 ATP5EP56381 51 aaPredicted RBP11.22□□□□□ -0.61
SMC4-221ENST00000489573 MUC17Q685J3 4493 aa11.19□□□□□ -0.62
SMC4-221ENST00000489573 C4orf26Q17RF5 130 aa11.16□□□□□ -0.62
SMC4-221ENST00000489573 DMAC1Q96GE9 116 aa11.1□□□□□ -0.63
SMC4-221ENST00000489573 KRTAP4-1Q9BYQ7 146 aa11.1□□□□□ -0.63
SMC4-221ENST00000489573 COX6B2Q6YFQ2 88 aa11.07□□□□□ -0.64
SMC4-221ENST00000489573 A8MUN3 132 aa11.03□□□□□ -0.64
SMC4-221ENST00000489573 MPLKIPQ8TAP9 179 aa11.03□□□□□ -0.64
SMC4-221ENST00000489573 ACYP2P14621 99 aa11.01□□□□□ -0.65
SMC4-221ENST00000489573 KRTAP3-1Q9BYR8 98 aa11□□□□□ -0.65
SMC4-221ENST00000489573 RBM12B-AS1Q9P1G2 102 aa10.99□□□□□ -0.65
SMC4-221ENST00000489573 SERP1Q9Y6X1 66 aa10.98□□□□□ -0.65
SMC4-221ENST00000489573 COA5Q86WW8 74 aa10.94□□□□□ -0.66
SMC4-221ENST00000489573 MUC2Q02817 5179 aa10.93□□□□□ -0.66
SMC4-221ENST00000489573 RPS28P62857 69 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms