RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 IGHV6-1A0A0B4J1U7 121 aa6.09□□□□□ -1.43
CPSF3-204ENST00000489403 FXYD2P54710 66 aa6.08□□□□□ -1.44
CPSF3-204ENST00000489403 MACF1Q9UPN3 7388 aaKnown RBP6.07□□□□□ -1.44
CPSF3-204ENST00000489403 DNAL4O96015 105 aa6.07□□□□□ -1.44
CPSF3-204ENST00000489403 ORMDL1Q9P0S3 153 aa6.07□□□□□ -1.44
CPSF3-204ENST00000489403 TRACP01848 142 aa6.06□□□□□ -1.44
CPSF3-204ENST00000489403 CCKP06307 115 aa6.06□□□□□ -1.44
CPSF3-204ENST00000489403 H3BQ85 93 aa6.05□□□□□ -1.44
CPSF3-204ENST00000489403 VAMP8Q9BV40 100 aa6.05□□□□□ -1.44
CPSF3-204ENST00000489403 SYNE2Q8WXH0 6885 aaKnown RBP6.04□□□□□ -1.44
CPSF3-204ENST00000489403 C8orf87E5RJ46 101 aa6.04□□□□□ -1.44
CPSF3-204ENST00000489403 TMEM256-PLSCR3K7ERE1 68 aa6.04□□□□□ -1.44
CPSF3-204ENST00000489403 A0A1B0GVX0 72 aa6.03□□□□□ -1.44
CPSF3-204ENST00000489403 MTURNQ8N3F0 131 aa6.03□□□□□ -1.44
CPSF3-204ENST00000489403 PSMB2P49721 201 aa6.01□□□□□ -1.45
CPSF3-204ENST00000489403 ZCCHC13Q8WW36 166 aaKnown RBP6.01□□□□□ -1.45
CPSF3-204ENST00000489403 K7ERJ3 54 aa6□□□□□ -1.45
CPSF3-204ENST00000489403 SPINK7P58062 85 aa6□□□□□ -1.45
CPSF3-204ENST00000489403 UBE2V1Q13404 147 aa6□□□□□ -1.45
CPSF3-204ENST00000489403 KRTAP19-6Q3LI70 58 aa6□□□□□ -1.45
CPSF3-204ENST00000489403 VPS25Q9BRG1 176 aa5.99□□□□□ -1.45
CPSF3-204ENST00000489403 KRTAP9-9Q9BYP9 154 aa5.99□□□□□ -1.45
CPSF3-204ENST00000489403 KRTAP9-4Q9BYQ2 154 aa5.99□□□□□ -1.45
CPSF3-204ENST00000489403 COX6CP09669 75 aa5.97□□□□□ -1.45
CPSF3-204ENST00000489403 HSD52Q0P140 79 aa5.97□□□□□ -1.45
CPSF3-204ENST00000489403 LINC00846Q9NV44 126 aa5.97□□□□□ -1.45
CPSF3-204ENST00000489403 A8MWP4 228 aa5.96□□□□□ -1.46
CPSF3-204ENST00000489403 RBM3P98179 157 aaKnown RBP5.95□□□□□ -1.46
CPSF3-204ENST00000489403 Q8N9P0 234 aaPredicted RBP5.95□□□□□ -1.46
CPSF3-204ENST00000489403 J3KT08 172 aa5.94□□□□□ -1.46
CPSF3-204ENST00000489403 WFDC13Q8IUB5 93 aa5.94□□□□□ -1.46
CPSF3-204ENST00000489403 DSCR8Q96T75 97 aa5.94□□□□□ -1.46
CPSF3-204ENST00000489403 KRTAP4-8A0A0G2JLE6 195 aa5.93□□□□□ -1.46
CPSF3-204ENST00000489403 C9orf118A6NHY6 69 aa5.92□□□□□ -1.46
CPSF3-204ENST00000489403 Q6ZQT0 140 aa5.91□□□□□ -1.46
CPSF3-204ENST00000489403 C9JAW5 83 aa5.89□□□□□ -1.47
CPSF3-204ENST00000489403 NDUFB1O75438 58 aa5.89□□□□□ -1.47
CPSF3-204ENST00000489403 PYY3Q5JQD4 70 aa5.89□□□□□ -1.47
CPSF3-204ENST00000489403 C8orf17Q9NRJ1 99 aa5.89□□□□□ -1.47
CPSF3-204ENST00000489403 SCGB1C2P0DMR2 95 aa5.88□□□□□ -1.47
CPSF3-204ENST00000489403 LYRM7Q5U5X0 104 aa5.87□□□□□ -1.47
CPSF3-204ENST00000489403 BAALC-AS2P0C853 105 aa5.86□□□□□ -1.47
CPSF3-204ENST00000489403 IGKV3D-7A0A0C4DH55 119 aa5.85□□□□□ -1.47
CPSF3-204ENST00000489403 KRTAP6-3Q3LI67 103 aa5.84□□□□□ -1.47
CPSF3-204ENST00000489403 Q6ZVQ6 151 aa5.84□□□□□ -1.47
CPSF3-204ENST00000489403 SMIM6P0DI80 62 aa5.83□□□□□ -1.48
CPSF3-204ENST00000489403 UQCR10Q9UDW1 63 aa5.83□□□□□ -1.48
CPSF3-204ENST00000489403 KRTAP19-4Q3LI73 84 aa5.81□□□□□ -1.48
CPSF3-204ENST00000489403 LOC110117498A0A087WWA1 95 aa5.8□□□□□ -1.48
CPSF3-204ENST00000489403 A0A1B0GW54 56 aa5.8□□□□□ -1.48
CPSF3-204ENST00000489403 JMJD7-PLA2G4BH0Y9G9 81 aa5.8□□□□□ -1.48
CPSF3-204ENST00000489403 H1FX-AS1Q4G0G2 97 aa5.8□□□□□ -1.48
CPSF3-204ENST00000489403 MMP24-AS1A0A0U1RRL7 71 aa5.79□□□□□ -1.48
CPSF3-204ENST00000489403 LOC105371267A0A1B0GV96 52 aa5.79□□□□□ -1.48
CPSF3-204ENST00000489403 PRR15Q8IV56 129 aa5.79□□□□□ -1.48
CPSF3-204ENST00000489403 MRPL34Q9BQ48 92 aaKnown RBP5.78□□□□□ -1.48
CPSF3-204ENST00000489403 TMEM254Q8TBM7 123 aa5.77□□□□□ -1.49
CPSF3-204ENST00000489403 ATXN8Q156A1 80 aa5.76□□□□□ -1.49
CPSF3-204ENST00000489403 C14orf132Q9NPU4 83 aa5.76□□□□□ -1.49
CPSF3-204ENST00000489403 PDE6GP18545 87 aa5.75□□□□□ -1.49
CPSF3-204ENST00000489403 NREPQ16612 68 aa5.75□□□□□ -1.49
CPSF3-204ENST00000489403 LCE1DQ5T752 114 aa5.75□□□□□ -1.49
CPSF3-204ENST00000489403 NAA38Q9BRA0 125 aaKnown RBP5.75□□□□□ -1.49
CPSF3-204ENST00000489403 TSTD3H0UI37 97 aa5.74□□□□□ -1.49
CPSF3-204ENST00000489403 hDV103S1A0JD37 113 aa5.73□□□□□ -1.49
CPSF3-204ENST00000489403 KRTAP4-7Q9BYR0 210 aa5.73□□□□□ -1.49
CPSF3-204ENST00000489403 K7EQZ3 153 aa5.72□□□□□ -1.49
CPSF3-204ENST00000489403 NDUFS5O43920 106 aa5.72□□□□□ -1.49
CPSF3-204ENST00000489403 IGKV2D-30A0A075B6S6 120 aa5.71□□□□□ -1.5
CPSF3-204ENST00000489403 IGKV2-30P06310 120 aa5.71□□□□□ -1.5
CPSF3-204ENST00000489403 C7orf65Q6ZTY9 151 aa5.7□□□□□ -1.5
CPSF3-204ENST00000489403 M0R143 59 aa5.69□□□□□ -1.5
CPSF3-204ENST00000489403 Q5W150 140 aa5.69□□□□□ -1.5
CPSF3-204ENST00000489403 MUC12Q9UKN1 5478 aa5.69□□□□□ -1.5
CPSF3-204ENST00000489403 NEBP20929 6669 aa5.68□□□□□ -1.5
CPSF3-204ENST00000489403 A6NN06 94 aa5.64□□□□□ -1.51
CPSF3-204ENST00000489403 C4orf26Q17RF5 130 aa5.64□□□□□ -1.51
CPSF3-204ENST00000489403 MT1BP07438 61 aa5.63□□□□□ -1.51
CPSF3-204ENST00000489403 BPY2O14599 106 aa5.62□□□□□ -1.51
CPSF3-204ENST00000489403 C5orf47Q569G3 176 aa5.62□□□□□ -1.51
CPSF3-204ENST00000489403 FAM236AA0A1B0GUQ0 79 aa5.61□□□□□ -1.51
CPSF3-204ENST00000489403 FAM236BA0A1B0GV22 79 aa5.61□□□□□ -1.51
CPSF3-204ENST00000489403 HCG22E2RYF7 251 aa5.6□□□□□ -1.51
CPSF3-204ENST00000489403 BATFQ16520 125 aa5.59□□□□□ -1.51
CPSF3-204ENST00000489403 Q5VV11 94 aa5.59□□□□□ -1.51
CPSF3-204ENST00000489403 CASC2Q6XLA1 102 aa5.59□□□□□ -1.51
CPSF3-204ENST00000489403 Q8N9L7 120 aa5.59□□□□□ -1.51
CPSF3-204ENST00000489403 KRTAP4-9Q9BYQ8 210 aa5.58□□□□□ -1.52
CPSF3-204ENST00000489403 H3BT86 120 aa5.57□□□□□ -1.52
CPSF3-204ENST00000489403 KRTAP19-8Q3LI54 63 aa5.57□□□□□ -1.52
CPSF3-204ENST00000489403 SPRR2GQ9BYE4 73 aa5.57□□□□□ -1.52
CPSF3-204ENST00000489403 KRTAP3-1Q9BYR8 98 aa5.57□□□□□ -1.52
CPSF3-204ENST00000489403 KRTAP23-1A1A580 65 aa5.56□□□□□ -1.52
CPSF3-204ENST00000489403 S4R3F8 94 aa5.56□□□□□ -1.52
CPSF3-204ENST00000489403 CXCL6P80162 114 aa5.55□□□□□ -1.52
CPSF3-204ENST00000489403 KRTAP10-5P60370 271 aa5.54□□□□□ -1.52
CPSF3-204ENST00000489403 LCA10Q71F78 164 aa5.53□□□□□ -1.52
CPSF3-204ENST00000489403 CSAG1Q6PB30 78 aa5.52□□□□□ -1.53
CPSF3-204ENST00000489403 PCP4L1A6NKN8 68 aa5.51□□□□□ -1.53
CPSF3-204ENST00000489403 KRTAP20-1Q3LI63 56 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms