RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 AKAP9Q99996 3911 aa0.47□□□□□ -2.33
VPS50-213ENST00000477572 ZFHX4Q86UP3 3567 aa0.47□□□□□ -2.33
VPS50-213ENST00000477572 SETD2Q9BYW2 2564 aaPredicted RBP0.47□□□□□ -2.33
VPS50-213ENST00000477572 DNAH7Q8WXX0 4024 aa0.47□□□□□ -2.33
VPS50-213ENST00000477572 VPS13DQ5THJ4 4388 aa0.46□□□□□ -2.34
VPS50-213ENST00000477572 BDP1A6H8Y1 2624 aa0.46□□□□□ -2.34
VPS50-213ENST00000477572 DEFB109BQ30KR1 87 aa0.46□□□□□ -2.34
VPS50-213ENST00000477572 PIEZO1Q92508 2521 aa0.46□□□□□ -2.34
VPS50-213ENST00000477572 DMBT1Q9UGM3 2413 aaPredicted RBP0.46□□□□□ -2.34
VPS50-213ENST00000477572 SACSQ9NZJ4 4579 aa0.45□□□□□ -2.34
VPS50-213ENST00000477572 RPL39P5Q59GN2 51 aa0.45□□□□□ -2.34
VPS50-213ENST00000477572 TMEM167AQ8TBQ9 72 aa0.45□□□□□ -2.34
VPS50-213ENST00000477572 DCHS2Q6V1P9 2916 aa0.45□□□□□ -2.34
VPS50-213ENST00000477572 HECTD4Q9Y4D8 3996 aa0.45□□□□□ -2.34
VPS50-213ENST00000477572 CHD8Q9HCK8 2581 aa0.45□□□□□ -2.34
VPS50-213ENST00000477572 FRAS1Q86XX4 4008 aa0.44□□□□□ -2.34
VPS50-213ENST00000477572 SPTBN5Q9NRC6 3674 aaKnown RBP0.44□□□□□ -2.34
VPS50-213ENST00000477572 DEFB108AA8MXU0 73 aa0.44□□□□□ -2.34
VPS50-213ENST00000477572 K7EIM0 57 aa0.44□□□□□ -2.34
VPS50-213ENST00000477572 KRTAP19-3Q7Z4W3 81 aa0.44□□□□□ -2.34
VPS50-213ENST00000477572 NOP10Q9NPE3 64 aaKnown RBP0.44□□□□□ -2.34
VPS50-213ENST00000477572 DNAH3Q8TD57 4116 aa0.44□□□□□ -2.34
VPS50-213ENST00000477572 GCN1Q92616 2671 aaKnown RBP0.44□□□□□ -2.34
VPS50-213ENST00000477572 FRYQ5TBA9 3013 aa0.44□□□□□ -2.34
VPS50-213ENST00000477572 ZZEF1O43149 2961 aa0.44□□□□□ -2.34
VPS50-213ENST00000477572 MDN1Q9NU22 5596 aa0.44□□□□□ -2.34
VPS50-213ENST00000477572 CEP250Q9BV73 2442 aa0.44□□□□□ -2.34
VPS50-213ENST00000477572 MAP1BP46821 2468 aaKnown RBP0.43□□□□□ -2.34
VPS50-213ENST00000477572 RIF1Q5UIP0 2472 aaKnown RBP0.43□□□□□ -2.34
VPS50-213ENST00000477572 TENM4Q6N022 2769 aa0.43□□□□□ -2.34
VPS50-213ENST00000477572 USP9YO00507 2555 aaPredicted RBP0.43□□□□□ -2.34
VPS50-213ENST00000477572 FLNCQ14315 2725 aa0.43□□□□□ -2.34
VPS50-213ENST00000477572 MYCBP2O75592 4640 aa0.43□□□□□ -2.34
VPS50-213ENST00000477572 NF1P21359 2839 aa0.43□□□□□ -2.34
VPS50-213ENST00000477572 APCP25054 2843 aa0.43□□□□□ -2.34
VPS50-213ENST00000477572 TNXBP22105 4242 aa0.43□□□□□ -2.34
VPS50-213ENST00000477572 SMG1Q96Q15 3661 aaKnown RBP0.43□□□□□ -2.34
VPS50-213ENST00000477572 RELNP78509 3460 aa0.43□□□□□ -2.34
VPS50-213ENST00000477572 PKHD1L1Q86WI1 4243 aa0.43□□□□□ -2.34
VPS50-213ENST00000477572 RANBP2P49792 3224 aaKnown RBP0.42□□□□□ -2.34
VPS50-213ENST00000477572 COL12A1Q99715 3063 aa0.42□□□□□ -2.34
VPS50-213ENST00000477572 NBEAL2Q6ZNJ1 2754 aa0.42□□□□□ -2.34
VPS50-213ENST00000477572 EPG5Q9HCE0 2579 aa0.42□□□□□ -2.34
VPS50-213ENST00000477572 DNAH8Q96JB1 4490 aa0.42□□□□□ -2.34
VPS50-213ENST00000477572 CFAP54Q96N23 3096 aa0.42□□□□□ -2.34
VPS50-213ENST00000477572 CUBNO60494 3623 aa0.42□□□□□ -2.34
VPS50-213ENST00000477572 ITPR3Q14573 2671 aa0.41□□□□□ -2.34
VPS50-213ENST00000477572 LRRK2Q5S007 2527 aa0.41□□□□□ -2.34
VPS50-213ENST00000477572 FLGP20930 4061 aaPredicted RBP0.41□□□□□ -2.34
VPS50-213ENST00000477572 APC2O95996 2303 aa0.41□□□□□ -2.34
VPS50-213ENST00000477572 HIVEP3Q5T1R4 2406 aa0.41□□□□□ -2.34
VPS50-213ENST00000477572 PHGR1C9JFL3 82 aa0.41□□□□□ -2.34
VPS50-213ENST00000477572 DYNC2H1Q8NCM8 4307 aaKnown RBP0.41□□□□□ -2.34
VPS50-213ENST00000477572 TACC2O95359 2948 aa0.41□□□□□ -2.34
VPS50-213ENST00000477572 PKD1L1Q8TDX9 2849 aa0.41□□□□□ -2.34
VPS50-213ENST00000477572 SPG11Q96JI7 2443 aa0.4□□□□□ -2.34
VPS50-213ENST00000477572 DNAH6Q9C0G6 4158 aa0.4□□□□□ -2.34
VPS50-213ENST00000477572 FAM186AA6NE01 2351 aa0.4□□□□□ -2.34
VPS50-213ENST00000477572 LAMA5O15230 3695 aa0.4□□□□□ -2.35
VPS50-213ENST00000477572 DMDP11532 3685 aa0.4□□□□□ -2.35
VPS50-213ENST00000477572 DMXL1Q9Y485 3027 aa0.4□□□□□ -2.35
VPS50-213ENST00000477572 APELAP0DMC3 54 aa0.4□□□□□ -2.35
VPS50-213ENST00000477572 DEFB1P60022 68 aa0.4□□□□□ -2.35
VPS50-213ENST00000477572 DEFB135Q30KP9 77 aa0.4□□□□□ -2.35
VPS50-213ENST00000477572 WDR87Q6ZQQ6 2873 aa0.4□□□□□ -2.35
VPS50-213ENST00000477572 COL6A3P12111 3177 aa0.4□□□□□ -2.35
VPS50-213ENST00000477572 C5orf42Q9H799 3197 aa0.4□□□□□ -2.35
VPS50-213ENST00000477572 SETXQ7Z333 2677 aaKnown RBP0.4□□□□□ -2.35
VPS50-213ENST00000477572 UTP20O75691 2785 aaKnown RBP0.4□□□□□ -2.35
VPS50-213ENST00000477572 LRBAP50851 2863 aa0.39□□□□□ -2.35
VPS50-213ENST00000477572 HUWE1Q7Z6Z7 4374 aaKnown RBP0.39□□□□□ -2.35
VPS50-213ENST00000477572 HIVEP1P15822 2718 aa0.39□□□□□ -2.35
VPS50-213ENST00000477572 TRRAPQ9Y4A5 3859 aa0.39□□□□□ -2.35
VPS50-213ENST00000477572 ANKRD11Q6UB99 2663 aaPredicted RBP0.39□□□□□ -2.35
VPS50-213ENST00000477572 H0YGG7 62 aa0.39□□□□□ -2.35
VPS50-213ENST00000477572 M0QZ58 72 aa0.39□□□□□ -2.35
VPS50-213ENST00000477572 KALRNO60229 2985 aa0.39□□□□□ -2.35
VPS50-213ENST00000477572 ATMQ13315 3056 aa0.39□□□□□ -2.35
VPS50-213ENST00000477572 PRUNE2Q8WUY3 3088 aa0.39□□□□□ -2.35
VPS50-213ENST00000477572 NBEAQ8NFP9 2946 aa0.39□□□□□ -2.35
VPS50-213ENST00000477572 ANK3Q12955 4377 aaKnown RBP0.39□□□□□ -2.35
VPS50-213ENST00000477572 PKD1P98161 4303 aa0.39□□□□□ -2.35
VPS50-213ENST00000477572 DNAH2Q9P225 4427 aa0.39□□□□□ -2.35
VPS50-213ENST00000477572 ACANP16112 2415 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 FRYLO94915 3013 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 MUC5BQ9HC84 5762 aaPredicted RBP0.38□□□□□ -2.35
VPS50-213ENST00000477572 PKHD1P08F94 4074 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 M0R2T5 61 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 STATHP02808 62 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 KRTAP2-3P0C7H8 128 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 SMR3AQ99954 134 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 KRTAP2-4Q9BYR9 128 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 KRTAP2-1Q9BYU5 128 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 CELSR3Q9NYQ7 3312 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 COL7A1Q02388 2944 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 ZANQ9Y493 2812 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 UNC79Q9P2D8 2635 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 MTORP42345 2549 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 ZFYVE26Q68DK2 2539 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 ANKHD1Q8IWZ3 2542 aaKnown RBP0.38□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms