RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 AEBP2Q6ZN18 517 aaPredicted RBP29.03■■■□□ 2.24
VPS50-213ENST00000477572 CHIC1Q5VXU3 224 aa27.93■■■□□ 2.06
VPS50-213ENST00000477572 SENP3Q9H4L4 574 aaPredicted RBP24.6■■□□□ 1.53
VPS50-213ENST00000477572 PHF23Q9BUL5 403 aaPredicted RBP24.59■■□□□ 1.53
VPS50-213ENST00000477572 FOXD1Q16676 465 aa22.95■■□□□ 1.26
VPS50-213ENST00000477572 PLPPR3Q6T4P5 718 aa22.5■■□□□ 1.19
VPS50-213ENST00000477572 PPP6R1Q9UPN7 881 aa21.85■■□□□ 1.09
VPS50-213ENST00000477572 ADRA2BP18089 450 aa21.83■■□□□ 1.09
VPS50-213ENST00000477572 PIAS4Q8N2W9 510 aaPredicted RBP21.56■■□□□ 1.04
VPS50-213ENST00000477572 MSH5O43196 834 aa21.2■□□□□ 0.98
VPS50-213ENST00000477572 POTEDQ86YR6 584 aa20.02■□□□□ 0.8
VPS50-213ENST00000477572 MAPK8IP2Q13387 824 aaPredicted RBP19.93■□□□□ 0.78
VPS50-213ENST00000477572 PPP4R3CPQ6ZMV5 832 aa19.84■□□□□ 0.77
VPS50-213ENST00000477572 SCAF1Q9H7N4 1312 aaKnown RBP19.83■□□□□ 0.77
VPS50-213ENST00000477572 DMRT2Q9Y5R5 561 aa19.59■□□□□ 0.73
VPS50-213ENST00000477572 CNKSR2Q8WXI2 1034 aa19.31■□□□□ 0.68
VPS50-213ENST00000477572 NCBP3Q53F19 620 aaKnown RBP19.16■□□□□ 0.66
VPS50-213ENST00000477572 KCNA4P22459 653 aa19.03■□□□□ 0.64
VPS50-213ENST00000477572 HOXD11P31277 338 aaPredicted RBP19.01■□□□□ 0.63
VPS50-213ENST00000477572 RNF216Q9NWF9 866 aaPredicted RBP19■□□□□ 0.63
VPS50-213ENST00000477572 NPM3O75607 178 aaKnown RBP18.94■□□□□ 0.62
VPS50-213ENST00000477572 DCAF8L1A6NGE4 600 aa18.91■□□□□ 0.62
VPS50-213ENST00000477572 DNAJC5BQ9UF47 199 aa18.24■□□□□ 0.51
VPS50-213ENST00000477572 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.22■□□□□ 0.51
VPS50-213ENST00000477572 RNF39Q9H2S5 420 aa18.17■□□□□ 0.5
VPS50-213ENST00000477572 CACNB1Q02641 598 aaPredicted RBP18.03■□□□□ 0.48
VPS50-213ENST00000477572 SLC4A1APQ9BWU0 796 aaKnown RBP18.03■□□□□ 0.48
VPS50-213ENST00000477572 SLC4A2P04920 1241 aa17.98■□□□□ 0.47
VPS50-213ENST00000477572 C1QBPQ07021 282 aaKnown RBP17.9■□□□□ 0.46
VPS50-213ENST00000477572 U3KPZ7 1027 aaPredicted RBP17.85■□□□□ 0.45
VPS50-213ENST00000477572 FOXD4L1Q9NU39 408 aa17.54■□□□□ 0.4
VPS50-213ENST00000477572 SPINK5Q9NQ38 1064 aaPredicted RBP17.53■□□□□ 0.4
VPS50-213ENST00000477572 ZBTB22O15209 634 aa17.51■□□□□ 0.39
VPS50-213ENST00000477572 CAPN15O75808 1086 aa17.46■□□□□ 0.39
VPS50-213ENST00000477572 MYCNP04198 464 aaPredicted RBP17.46■□□□□ 0.39
VPS50-213ENST00000477572 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.41■□□□□ 0.38
VPS50-213ENST00000477572 HNRNPUL2Q1KMD3 747 aaKnown RBP17.41■□□□□ 0.38
VPS50-213ENST00000477572 SAMD1Q6SPF0 538 aaPredicted RBP17.37■□□□□ 0.37
VPS50-213ENST00000477572 TRHP20396 242 aaPredicted RBP17.31■□□□□ 0.36
VPS50-213ENST00000477572 APLP2Q06481 763 aa17.29■□□□□ 0.36
VPS50-213ENST00000477572 EHMT2Q96KQ7 1210 aa17.21■□□□□ 0.35
VPS50-213ENST00000477572 DSG3P32926 999 aa17.2■□□□□ 0.34
VPS50-213ENST00000477572 ZNF219Q9P2Y4 722 aaPredicted RBP17.17■□□□□ 0.34
VPS50-213ENST00000477572 ABCB7O75027 752 aa17.14■□□□□ 0.33
VPS50-213ENST00000477572 ATF5Q9Y2D1 282 aaPredicted RBP17.13■□□□□ 0.33
VPS50-213ENST00000477572 CSRNP3Q8WYN3 585 aa17.09■□□□□ 0.33
VPS50-213ENST00000477572 POLA2Q14181 598 aa16.91■□□□□ 0.3
VPS50-213ENST00000477572 ATXN8OSP0DMR3 200 aa16.88■□□□□ 0.29
VPS50-213ENST00000477572 ZBTB12Q9Y330 459 aaPredicted RBP16.49■□□□□ 0.23
VPS50-213ENST00000477572 OSCARQ8IYS5 282 aa16.37■□□□□ 0.21
VPS50-213ENST00000477572 FBLN2P98095 1184 aa16.35■□□□□ 0.21
VPS50-213ENST00000477572 MKRN4PQ13434 485 aaPredicted RBP16.33■□□□□ 0.2
VPS50-213ENST00000477572 RBM42Q9BTD8 480 aaKnown RBP16.32■□□□□ 0.2
VPS50-213ENST00000477572 AKT1S1Q96B36 256 aa16.07■□□□□ 0.16
VPS50-213ENST00000477572 SPDYE2BA6NHP3 402 aa16.05■□□□□ 0.16
VPS50-213ENST00000477572 SPDYE6P0CI01 402 aa16.05■□□□□ 0.16
VPS50-213ENST00000477572 SPDYE2Q495Y8 402 aa16.05■□□□□ 0.16
VPS50-213ENST00000477572 ZNF692Q9BU19 519 aaPredicted RBP16■□□□□ 0.15
VPS50-213ENST00000477572 REM2Q8IYK8 340 aaPredicted RBP15.98■□□□□ 0.15
VPS50-213ENST00000477572 SSUH2Q9Y2M2 353 aa15.89■□□□□ 0.13
VPS50-213ENST00000477572 CHRDL2Q6WN34 429 aa15.86■□□□□ 0.13
VPS50-213ENST00000477572 PITPNM1O00562 1244 aa15.81■□□□□ 0.12
VPS50-213ENST00000477572 PABPN1Q86U42 306 aaKnown RBP eCLIP15.8■□□□□ 0.12
VPS50-213ENST00000477572 SPDYE4A6NLX3 237 aa15.78■□□□□ 0.12
VPS50-213ENST00000477572 POTEHQ6S545 545 aa15.77■□□□□ 0.12
VPS50-213ENST00000477572 CLEC11AQ9Y240 323 aa15.73■□□□□ 0.11
VPS50-213ENST00000477572 SPDYE1Q8NFV5 336 aaPredicted RBP15.68■□□□□ 0.1
VPS50-213ENST00000477572 PIP4P2Q8N4L2 257 aa15.6■□□□□ 0.09
VPS50-213ENST00000477572 FXR2P51116 673 aaKnown RBP eCLIP15.53■□□□□ 0.08
VPS50-213ENST00000477572 FKBP8Q14318 412 aa15.5■□□□□ 0.07
VPS50-213ENST00000477572 PRR29P0C7W0 189 aa15.48■□□□□ 0.07
VPS50-213ENST00000477572 PRKAR2AP13861 404 aaKnown RBP15.42■□□□□ 0.06
VPS50-213ENST00000477572 CHADLQ6NUI6 762 aa15.4■□□□□ 0.06
VPS50-213ENST00000477572 PROM2Q8N271 834 aa15.37■□□□□ 0.05
VPS50-213ENST00000477572 STAG3Q9UJ98 1225 aa15.36■□□□□ 0.05
VPS50-213ENST00000477572 HAX1O00165 279 aa15.23■□□□□ 0.03
VPS50-213ENST00000477572 CREBZFQ9NS37 354 aa15.2■□□□□ 0.02
VPS50-213ENST00000477572 FARP1Q9Y4F1 1045 aaPredicted RBP15.14■□□□□ 0.01
VPS50-213ENST00000477572 EVX2Q03828 476 aa15.1■□□□□ 0.01
VPS50-213ENST00000477572 MIER1Q8N108 512 aa15.03■□□□□ -0
VPS50-213ENST00000477572 C19orf67A6NJJ6 358 aa15.02■□□□□ -0
VPS50-213ENST00000477572 SP7Q8TDD2 431 aaPredicted RBP14.98□□□□□ -0.01
VPS50-213ENST00000477572 MNX1P50219 401 aaPredicted RBP14.97□□□□□ -0.01
VPS50-213ENST00000477572 PLCD3Q8N3E9 789 aa14.97□□□□□ -0.01
VPS50-213ENST00000477572 CD44P16070 742 aaKnown RBP14.95□□□□□ -0.02
VPS50-213ENST00000477572 FBXO3Q9UK99 471 aa14.94□□□□□ -0.02
VPS50-213ENST00000477572 PLEKHG5O94827 1062 aa14.9□□□□□ -0.02
VPS50-213ENST00000477572 NPM1P06748 294 aaKnown RBP eCLIP14.9□□□□□ -0.02
VPS50-213ENST00000477572 ZRANB1Q9UGI0 708 aa14.83□□□□□ -0.04
VPS50-213ENST00000477572 VASPP50552 380 aaPredicted RBP14.81□□□□□ -0.04
VPS50-213ENST00000477572 TSPYL2Q9H2G4 693 aaPredicted RBP14.76□□□□□ -0.05
VPS50-213ENST00000477572 PAK3O75914 559 aaPredicted RBP14.75□□□□□ -0.05
VPS50-213ENST00000477572 GABBR2O75899 941 aa14.73□□□□□ -0.05
VPS50-213ENST00000477572 RASEFQ8IZ41 740 aa14.7□□□□□ -0.06
VPS50-213ENST00000477572 KLHL34Q8N239 644 aa14.7□□□□□ -0.06
VPS50-213ENST00000477572 PHF12Q96QT6 1004 aa14.7□□□□□ -0.06
VPS50-213ENST00000477572 ZBTB47Q9UFB7 747 aaPredicted RBP14.7□□□□□ -0.06
VPS50-213ENST00000477572 ZNF579Q8NAF0 562 aaKnown RBP14.68□□□□□ -0.06
VPS50-213ENST00000477572 NUBP1P53384 320 aa14.64□□□□□ -0.07
VPS50-213ENST00000477572 IFNLR1Q8IU57 520 aaPredicted RBP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms