RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 KRTAP1-5Q9BYS1 174 aa4.85□□□□□ -1.63
COL6A3-210ENST00000473258 RPS29P62273 56 aaKnown RBP4.83□□□□□ -1.64
COL6A3-210ENST00000473258 CFAP46Q8IYW2 2715 aa4.83□□□□□ -1.64
COL6A3-210ENST00000473258 FRYQ5TBA9 3013 aa4.82□□□□□ -1.64
COL6A3-210ENST00000473258 GCN1Q92616 2671 aaKnown RBP4.82□□□□□ -1.64
COL6A3-210ENST00000473258 TPRXLQ17RH7 258 aa4.81□□□□□ -1.64
COL6A3-210ENST00000473258 KRTAP7-1Q8IUC3 87 aa4.81□□□□□ -1.64
COL6A3-210ENST00000473258 INE1O15225 51 aa4.81□□□□□ -1.64
COL6A3-210ENST00000473258 LAMA5O15230 3695 aa4.79□□□□□ -1.64
COL6A3-210ENST00000473258 PRO2289Q9P1D8 64 aa4.79□□□□□ -1.64
COL6A3-210ENST00000473258 BSNQ9UPA5 3926 aa4.79□□□□□ -1.64
COL6A3-210ENST00000473258 KRTAP13-1Q8IUC0 172 aa4.77□□□□□ -1.65
COL6A3-210ENST00000473258 CFAP47Q6ZTR5 3102 aa4.76□□□□□ -1.65
COL6A3-210ENST00000473258 Q6ZRN7 208 aaPredicted RBP4.75□□□□□ -1.65
COL6A3-210ENST00000473258 BOD1L1Q8NFC6 3051 aa4.75□□□□□ -1.65
COL6A3-210ENST00000473258 ITPR1Q14643 2758 aa4.74□□□□□ -1.65
COL6A3-210ENST00000473258 CSMD1Q96PZ7 3565 aa4.74□□□□□ -1.65
COL6A3-210ENST00000473258 SVEP1Q4LDE5 3571 aa4.73□□□□□ -1.65
COL6A3-210ENST00000473258 KRTAP15-1Q3LI76 137 aa4.73□□□□□ -1.65
COL6A3-210ENST00000473258 KRTAP1-1Q07627 177 aa4.72□□□□□ -1.65
COL6A3-210ENST00000473258 KRTAP13-2Q52LG2 175 aa4.71□□□□□ -1.66
COL6A3-210ENST00000473258 FLNAP21333 2647 aaKnown RBP4.7□□□□□ -1.66
COL6A3-210ENST00000473258 KRTAP10-1P60331 282 aa4.7□□□□□ -1.66
COL6A3-210ENST00000473258 KRTAP1-3Q8IUG1 177 aa4.7□□□□□ -1.66
COL6A3-210ENST00000473258 NBEAL2Q6ZNJ1 2754 aa4.68□□□□□ -1.66
COL6A3-210ENST00000473258 CSMD2Q7Z408 3487 aa4.66□□□□□ -1.66
COL6A3-210ENST00000473258 KRTAP10-2P60368 255 aa4.65□□□□□ -1.67
COL6A3-210ENST00000473258 UBR5O95071 2799 aaPredicted RBP4.63□□□□□ -1.67
COL6A3-210ENST00000473258 KRTAP23-1A1A580 65 aa4.63□□□□□ -1.67
COL6A3-210ENST00000473258 KRTAP12-2P59991 146 aa4.62□□□□□ -1.67
COL6A3-210ENST00000473258 UTP20O75691 2785 aaKnown RBP4.61□□□□□ -1.67
COL6A3-210ENST00000473258 ATMQ13315 3056 aa4.58□□□□□ -1.68
COL6A3-210ENST00000473258 KRTAP13-4Q3LI77 160 aa4.58□□□□□ -1.68
COL6A3-210ENST00000473258 NBEAQ8NFP9 2946 aa4.57□□□□□ -1.68
COL6A3-210ENST00000473258 CUBNO60494 3623 aa4.57□□□□□ -1.68
COL6A3-210ENST00000473258 KRTAP13-3Q3SY46 172 aa4.57□□□□□ -1.68
COL6A3-210ENST00000473258 VPS13CQ709C8 3753 aa4.57□□□□□ -1.68
COL6A3-210ENST00000473258 DMXL1Q9Y485 3027 aa4.56□□□□□ -1.68
COL6A3-210ENST00000473258 KRTAP12-1P59990 96 aa4.54□□□□□ -1.68
COL6A3-210ENST00000473258 LRBAP50851 2863 aa4.53□□□□□ -1.68
COL6A3-210ENST00000473258 TEX15Q9BXT5 2789 aa4.53□□□□□ -1.68
COL6A3-210ENST00000473258 KMT2BQ9UMN6 2715 aaPredicted RBP4.5□□□□□ -1.69
COL6A3-210ENST00000473258 DMXL2Q8TDJ6 3036 aa4.5□□□□□ -1.69
COL6A3-210ENST00000473258 ZNF292O60281 2723 aa4.48□□□□□ -1.69
COL6A3-210ENST00000473258 APCP25054 2843 aa4.48□□□□□ -1.69
COL6A3-210ENST00000473258 MGAQ8IWI9 3026 aa4.47□□□□□ -1.69
COL6A3-210ENST00000473258 KALRNO60229 2985 aa4.45□□□□□ -1.7
COL6A3-210ENST00000473258 ADGRG4Q8IZF6 3080 aa4.45□□□□□ -1.7
COL6A3-210ENST00000473258 XP32Q5T750 250 aa4.44□□□□□ -1.7
COL6A3-210ENST00000473258 NBPF19A0A087WUL8 3843 aa4.43□□□□□ -1.7
COL6A3-210ENST00000473258 DSPP15924 2871 aaKnown RBP4.43□□□□□ -1.7
COL6A3-210ENST00000473258 TGP01266 2768 aa4.42□□□□□ -1.7
COL6A3-210ENST00000473258 MAP1AP78559 2803 aaPredicted RBP4.42□□□□□ -1.7
COL6A3-210ENST00000473258 AKAP9Q99996 3911 aa4.42□□□□□ -1.7
COL6A3-210ENST00000473258 ITPR2Q14571 2701 aa4.41□□□□□ -1.7
COL6A3-210ENST00000473258 ASH1LQ9NR48 2969 aaKnown RBP4.39□□□□□ -1.71
COL6A3-210ENST00000473258 HIVEP1P15822 2718 aa4.37□□□□□ -1.71
COL6A3-210ENST00000473258 KRTAP1-4P0C5Y4 121 aa4.35□□□□□ -1.71
COL6A3-210ENST00000473258 KRTAP10-10P60014 251 aa4.35□□□□□ -1.71
COL6A3-210ENST00000473258 DCHS2Q6V1P9 2916 aa4.34□□□□□ -1.71
COL6A3-210ENST00000473258 CELSR1Q9NYQ6 3014 aa4.32□□□□□ -1.72
COL6A3-210ENST00000473258 COL12A1Q99715 3063 aa4.31□□□□□ -1.72
COL6A3-210ENST00000473258 A0A1B0GVY2 172 aa4.31□□□□□ -1.72
COL6A3-210ENST00000473258 TENM3Q9P273 2699 aa4.3□□□□□ -1.72
COL6A3-210ENST00000473258 KRTAP10-6P60371 365 aaPredicted RBP4.29□□□□□ -1.72
COL6A3-210ENST00000473258 TACC2O95359 2948 aa4.28□□□□□ -1.72
COL6A3-210ENST00000473258 KRTAP3-1Q9BYR8 98 aa4.26□□□□□ -1.73
COL6A3-210ENST00000473258 ZZEF1O43149 2961 aa4.25□□□□□ -1.73
COL6A3-210ENST00000473258 TENM1Q9UKZ4 2725 aa4.23□□□□□ -1.73
COL6A3-210ENST00000473258 FLNCQ14315 2725 aa4.22□□□□□ -1.73
COL6A3-210ENST00000473258 SRRM2Q9UQ35 2752 aaKnown RBP4.22□□□□□ -1.73
COL6A3-210ENST00000473258 CELSR2Q9HCU4 2923 aa4.21□□□□□ -1.73
COL6A3-210ENST00000473258 ZNF469Q96JG9 3925 aaPredicted RBP4.21□□□□□ -1.74
COL6A3-210ENST00000473258 TENM2Q9NT68 2774 aa4.19□□□□□ -1.74
COL6A3-210ENST00000473258 CRYBG3Q68DQ2 2970 aa4.19□□□□□ -1.74
COL6A3-210ENST00000473258 TENM4Q6N022 2769 aa4.17□□□□□ -1.74
COL6A3-210ENST00000473258 PDZD2O15018 2839 aa4.15□□□□□ -1.74
COL6A3-210ENST00000473258 NIPBLQ6KC79 2804 aaeCLIP4.13□□□□□ -1.75
COL6A3-210ENST00000473258 FBN3Q75N90 2809 aa4.12□□□□□ -1.75
COL6A3-210ENST00000473258 ANK3Q12955 4377 aaKnown RBP4.08□□□□□ -1.76
COL6A3-210ENST00000473258 KRTAP3-2Q9BYR7 98 aa4.07□□□□□ -1.76
COL6A3-210ENST00000473258 ZANQ9Y493 2812 aa4.07□□□□□ -1.76
COL6A3-210ENST00000473258 CSMD3Q7Z407 3707 aa4.06□□□□□ -1.76
COL6A3-210ENST00000473258 HRNRQ86YZ3 2850 aaPredicted RBP4.05□□□□□ -1.76
COL6A3-210ENST00000473258 NF1P21359 2839 aa4.01□□□□□ -1.77
COL6A3-210ENST00000473258 ANK2Q01484 3957 aa3.98□□□□□ -1.77
COL6A3-210ENST00000473258 CMYA5Q8N3K9 4069 aa3.97□□□□□ -1.77
COL6A3-210ENST00000473258 KRTAP12-3P60328 96 aa3.94□□□□□ -1.78
COL6A3-210ENST00000473258 KRTAP3-3Q9BYR6 98 aa3.94□□□□□ -1.78
COL6A3-210ENST00000473258 TRRAPQ9Y4A5 3859 aa3.93□□□□□ -1.78
COL6A3-210ENST00000473258 KRTAP10-12P60413 245 aa3.91□□□□□ -1.78
COL6A3-210ENST00000473258 FBN2P35556 2912 aa3.89□□□□□ -1.79
COL6A3-210ENST00000473258 DNAH3Q8TD57 4116 aa3.88□□□□□ -1.79
COL6A3-210ENST00000473258 LYSTQ99698 3801 aa3.87□□□□□ -1.79
COL6A3-210ENST00000473258 KRTAP10-5P60370 271 aa3.86□□□□□ -1.79
COL6A3-210ENST00000473258 CRCT1Q9UGL9 99 aa3.84□□□□□ -1.79
COL6A3-210ENST00000473258 LCE3AQ5TA76 89 aa3.84□□□□□ -1.8
COL6A3-210ENST00000473258 PKD1L1Q8TDX9 2849 aa3.79□□□□□ -1.8
COL6A3-210ENST00000473258 MXRA5Q9NR99 2828 aa3.78□□□□□ -1.8
COL6A3-210ENST00000473258 DNAH1Q9P2D7 4330 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms