RNA–Protein interactions for RNA: ENST00000467326.5

VPS50-209, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-209ENST00000467326 RPS29P62273 56 aaKnown RBP0.82□□□□□ -2.28
VPS50-209ENST00000467326 AKAP13Q12802 2813 aa0.82□□□□□ -2.28
VPS50-209ENST00000467326 SRRM2Q9UQ35 2752 aaKnown RBP0.81□□□□□ -2.28
VPS50-209ENST00000467326 LINC01556Q5JQF7 62 aa0.81□□□□□ -2.28
VPS50-209ENST00000467326 EP300Q09472 2414 aaPredicted RBP0.81□□□□□ -2.28
VPS50-209ENST00000467326 MUC16Q8WXI7 14507 aa0.8□□□□□ -2.28
VPS50-209ENST00000467326 VWFP04275 2813 aa0.8□□□□□ -2.28
VPS50-209ENST00000467326 CHD7Q9P2D1 2997 aa0.8□□□□□ -2.28
VPS50-209ENST00000467326 APCP25054 2843 aa0.8□□□□□ -2.28
VPS50-209ENST00000467326 CEP290O15078 2479 aa0.8□□□□□ -2.28
VPS50-209ENST00000467326 COL6A5A8TX70 2615 aa0.8□□□□□ -2.28
VPS50-209ENST00000467326 KRTAP8-1Q8IUC2 63 aa0.79□□□□□ -2.28
VPS50-209ENST00000467326 TENM2Q9NT68 2774 aa0.79□□□□□ -2.28
VPS50-209ENST00000467326 CREBBPQ92793 2442 aa0.78□□□□□ -2.28
VPS50-209ENST00000467326 CSMD3Q7Z407 3707 aa0.78□□□□□ -2.29
VPS50-209ENST00000467326 PTPN13Q12923 2485 aa0.77□□□□□ -2.29
VPS50-209ENST00000467326 TENM3Q9P273 2699 aa0.77□□□□□ -2.29
VPS50-209ENST00000467326 A0A096LPF7 62 aa0.77□□□□□ -2.29
VPS50-209ENST00000467326 APC2O95996 2303 aa0.77□□□□□ -2.29
VPS50-209ENST00000467326 UBR5O95071 2799 aaPredicted RBP0.77□□□□□ -2.29
VPS50-209ENST00000467326 CELSR1Q9NYQ6 3014 aa0.77□□□□□ -2.29
VPS50-209ENST00000467326 PRM1P04553 51 aa0.76□□□□□ -2.29
VPS50-209ENST00000467326 CHD8Q9HCK8 2581 aa0.75□□□□□ -2.29
VPS50-209ENST00000467326 ACACAQ13085 2346 aa0.75□□□□□ -2.29
VPS50-209ENST00000467326 UNC79Q9P2D8 2635 aa0.75□□□□□ -2.29
VPS50-209ENST00000467326 ZFYVE26Q68DK2 2539 aa0.75□□□□□ -2.29
VPS50-209ENST00000467326 FBN2P35556 2912 aa0.75□□□□□ -2.29
VPS50-209ENST00000467326 OTOGQ6ZRI0 2925 aa0.75□□□□□ -2.29
VPS50-209ENST00000467326 NCOR1O75376 2440 aa0.74□□□□□ -2.29
VPS50-209ENST00000467326 TNRC18O15417 2968 aaPredicted RBP0.73□□□□□ -2.29
VPS50-209ENST00000467326 DMBT1Q9UGM3 2413 aaPredicted RBP0.73□□□□□ -2.29
VPS50-209ENST00000467326 NAV2Q8IVL1 2488 aa0.73□□□□□ -2.29
VPS50-209ENST00000467326 SPTBN4Q9H254 2564 aa0.72□□□□□ -2.29
VPS50-209ENST00000467326 NBASA2RRP1 2371 aa0.71□□□□□ -2.3
VPS50-209ENST00000467326 ANK2Q01484 3957 aa0.71□□□□□ -2.3
VPS50-209ENST00000467326 NOTCH1P46531 2555 aa0.71□□□□□ -2.3
VPS50-209ENST00000467326 HIVEP3Q5T1R4 2406 aa0.7□□□□□ -2.3
VPS50-209ENST00000467326 MAP1BP46821 2468 aaKnown RBP0.7□□□□□ -2.3
VPS50-209ENST00000467326 SPRR2DP22532 72 aa0.7□□□□□ -2.3
VPS50-209ENST00000467326 USP24Q9UPU5 2620 aa0.7□□□□□ -2.3
VPS50-209ENST00000467326 CCDC168Q8NDH2 2452 aa0.7□□□□□ -2.3
VPS50-209ENST00000467326 CRYBG3Q68DQ2 2970 aa0.69□□□□□ -2.3
VPS50-209ENST00000467326 MT1AP04731 61 aa0.69□□□□□ -2.3
VPS50-209ENST00000467326 SPRR2BP35325 72 aa0.69□□□□□ -2.3
VPS50-209ENST00000467326 MGAQ8IWI9 3026 aa0.69□□□□□ -2.3
VPS50-209ENST00000467326 TNXBP22105 4242 aa0.69□□□□□ -2.3
VPS50-209ENST00000467326 FRAS1Q86XX4 4008 aa0.68□□□□□ -2.3
VPS50-209ENST00000467326 HTN3P15516 51 aa0.68□□□□□ -2.3
VPS50-209ENST00000467326 ZNF469Q96JG9 3925 aaPredicted RBP0.68□□□□□ -2.3
VPS50-209ENST00000467326 SETD2Q9BYW2 2564 aaPredicted RBP0.68□□□□□ -2.3
VPS50-209ENST00000467326 MTORP42345 2549 aa0.68□□□□□ -2.3
VPS50-209ENST00000467326 SETXQ7Z333 2677 aaKnown RBP0.67□□□□□ -2.3
VPS50-209ENST00000467326 SPRR2AP35326 72 aa0.67□□□□□ -2.3
VPS50-209ENST00000467326 PKD1L1Q8TDX9 2849 aa0.67□□□□□ -2.3
VPS50-209ENST00000467326 ITPR3Q14573 2671 aa0.67□□□□□ -2.3
VPS50-209ENST00000467326 FRYQ5TBA9 3013 aa0.67□□□□□ -2.3
VPS50-209ENST00000467326 FLNCQ14315 2725 aa0.66□□□□□ -2.3
VPS50-209ENST00000467326 AHNAKQ09666 5890 aaKnown RBP0.66□□□□□ -2.3
VPS50-209ENST00000467326 SMR3BP02814 79 aaPredicted RBP0.66□□□□□ -2.3
VPS50-209ENST00000467326 NF1P21359 2839 aa0.66□□□□□ -2.3
VPS50-209ENST00000467326 CACNA1AO00555 2505 aa0.65□□□□□ -2.31
VPS50-209ENST00000467326 FAM186AA6NE01 2351 aa0.65□□□□□ -2.31
VPS50-209ENST00000467326 NSD1Q96L73 2696 aaPredicted RBP0.65□□□□□ -2.31
VPS50-209ENST00000467326 GCN1Q92616 2671 aaKnown RBP0.64□□□□□ -2.31
VPS50-209ENST00000467326 PDZD2O15018 2839 aa0.64□□□□□ -2.31
VPS50-209ENST00000467326 NCOR2Q9Y618 2525 aa0.64□□□□□ -2.31
VPS50-209ENST00000467326 EPG5Q9HCE0 2579 aa0.63□□□□□ -2.31
VPS50-209ENST00000467326 ACANP16112 2415 aa0.63□□□□□ -2.31
VPS50-209ENST00000467326 USP9YO00507 2555 aaPredicted RBP0.63□□□□□ -2.31
VPS50-209ENST00000467326 MUC5BQ9HC84 5762 aaPredicted RBP0.63□□□□□ -2.31
VPS50-209ENST00000467326 COL7A1Q02388 2944 aa0.62□□□□□ -2.31
VPS50-209ENST00000467326 UTP20O75691 2785 aaKnown RBP0.62□□□□□ -2.31
VPS50-209ENST00000467326 ANKRD11Q6UB99 2663 aaPredicted RBP0.62□□□□□ -2.31
VPS50-209ENST00000467326 COL12A1Q99715 3063 aa0.62□□□□□ -2.31
VPS50-209ENST00000467326 MYCBP2O75592 4640 aa0.62□□□□□ -2.31
VPS50-209ENST00000467326 ZFHX4Q86UP3 3567 aa0.62□□□□□ -2.31
VPS50-209ENST00000467326 VPS13DQ5THJ4 4388 aa0.61□□□□□ -2.31
VPS50-209ENST00000467326 DCHS2Q6V1P9 2916 aa0.61□□□□□ -2.31
VPS50-209ENST00000467326 STAB1Q9NY15 2570 aa0.61□□□□□ -2.31
VPS50-209ENST00000467326 LRRK2Q5S007 2527 aa0.61□□□□□ -2.31
VPS50-209ENST00000467326 KRTAP21-1Q3LI58 79 aa0.61□□□□□ -2.31
VPS50-209ENST00000467326 RIF1Q5UIP0 2472 aaKnown RBP0.61□□□□□ -2.31
VPS50-209ENST00000467326 TACC2O95359 2948 aa0.6□□□□□ -2.31
VPS50-209ENST00000467326 CEP250Q9BV73 2442 aa0.6□□□□□ -2.31
VPS50-209ENST00000467326 WDR87Q6ZQQ6 2873 aa0.6□□□□□ -2.31
VPS50-209ENST00000467326 FLNBO75369 2602 aaKnown RBP0.6□□□□□ -2.31
VPS50-209ENST00000467326 PRKDCP78527 4128 aaKnown RBP0.6□□□□□ -2.31
VPS50-209ENST00000467326 DMXL1Q9Y485 3027 aa0.59□□□□□ -2.31
VPS50-209ENST00000467326 SACSQ9NZJ4 4579 aa0.59□□□□□ -2.31
VPS50-209ENST00000467326 NIPBLQ6KC79 2804 aaeCLIP0.59□□□□□ -2.31
VPS50-209ENST00000467326 CELSR3Q9NYQ7 3312 aa0.59□□□□□ -2.31
VPS50-209ENST00000467326 KRTAP19-5Q3LI72 72 aa0.59□□□□□ -2.31
VPS50-209ENST00000467326 RANBP2P49792 3224 aaKnown RBP0.59□□□□□ -2.32
VPS50-209ENST00000467326 SONP18583 2426 aaKnown RBP0.58□□□□□ -2.32
VPS50-209ENST00000467326 FRYLO94915 3013 aa0.58□□□□□ -2.32
VPS50-209ENST00000467326 DNAH11Q96DT5 4516 aa0.58□□□□□ -2.32
VPS50-209ENST00000467326 SPRR2FQ96RM1 72 aa0.58□□□□□ -2.32
VPS50-209ENST00000467326 LYSTQ99698 3801 aa0.58□□□□□ -2.32
VPS50-209ENST00000467326 HUWE1Q7Z6Z7 4374 aaKnown RBP0.58□□□□□ -2.32
VPS50-209ENST00000467326 FAT2Q9NYQ8 4349 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms