RNA–Protein interactions for RNA: ENST00000467326.5

VPS50-209, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-209ENST00000467326 AEBP2Q6ZN18 517 aaPredicted RBP23.56■■□□□ 1.36
VPS50-209ENST00000467326 CHIC1Q5VXU3 224 aa22.07■■□□□ 1.12
VPS50-209ENST00000467326 SENP3Q9H4L4 574 aaPredicted RBP20.19■□□□□ 0.82
VPS50-209ENST00000467326 PHF23Q9BUL5 403 aaPredicted RBP19.82■□□□□ 0.76
VPS50-209ENST00000467326 FOXD1Q16676 465 aa18.87■□□□□ 0.61
VPS50-209ENST00000467326 POTEDQ86YR6 584 aa18.45■□□□□ 0.54
VPS50-209ENST00000467326 MSH5O43196 834 aa17.85■□□□□ 0.45
VPS50-209ENST00000467326 PLPPR3Q6T4P5 718 aa17.53■□□□□ 0.4
VPS50-209ENST00000467326 PIAS4Q8N2W9 510 aaPredicted RBP17.48■□□□□ 0.39
VPS50-209ENST00000467326 PPP6R1Q9UPN7 881 aa17.22■□□□□ 0.35
VPS50-209ENST00000467326 ADRA2BP18089 450 aa17.13■□□□□ 0.33
VPS50-209ENST00000467326 SCAF1Q9H7N4 1312 aaKnown RBP15.97■□□□□ 0.15
VPS50-209ENST00000467326 MAPK8IP2Q13387 824 aaPredicted RBP15.9■□□□□ 0.14
VPS50-209ENST00000467326 DMRT2Q9Y5R5 561 aa15.9■□□□□ 0.14
VPS50-209ENST00000467326 CACNB1Q02641 598 aaPredicted RBP15.67■□□□□ 0.1
VPS50-209ENST00000467326 DCAF8L1A6NGE4 600 aa15.29■□□□□ 0.04
VPS50-209ENST00000467326 PPP4R3CPQ6ZMV5 832 aa15.24■□□□□ 0.03
VPS50-209ENST00000467326 RNF39Q9H2S5 420 aa15.22■□□□□ 0.03
VPS50-209ENST00000467326 HOXD11P31277 338 aaPredicted RBP15.19■□□□□ 0.02
VPS50-209ENST00000467326 CNKSR2Q8WXI2 1034 aa15.11■□□□□ 0.01
VPS50-209ENST00000467326 RNF216Q9NWF9 866 aaPredicted RBP15.03■□□□□ -0
VPS50-209ENST00000467326 C1QBPQ07021 282 aaKnown RBP14.95□□□□□ -0.02
VPS50-209ENST00000467326 DNAJC5BQ9UF47 199 aa14.86□□□□□ -0.03
VPS50-209ENST00000467326 NCBP3Q53F19 620 aaKnown RBP14.73□□□□□ -0.05
VPS50-209ENST00000467326 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.54□□□□□ -0.08
VPS50-209ENST00000467326 KCNA4P22459 653 aa14.51□□□□□ -0.09
VPS50-209ENST00000467326 POTEHQ6S545 545 aa14.33□□□□□ -0.12
VPS50-209ENST00000467326 NPM3O75607 178 aaKnown RBP14.32□□□□□ -0.12
VPS50-209ENST00000467326 U3KPZ7 1027 aaPredicted RBP14.07□□□□□ -0.16
VPS50-209ENST00000467326 CAPN15O75808 1086 aa14.05□□□□□ -0.16
VPS50-209ENST00000467326 DSG3P32926 999 aa14.05□□□□□ -0.16
VPS50-209ENST00000467326 SPINK5Q9NQ38 1064 aaPredicted RBP13.98□□□□□ -0.17
VPS50-209ENST00000467326 APLP2Q06481 763 aa13.97□□□□□ -0.17
VPS50-209ENST00000467326 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.83□□□□□ -0.2
VPS50-209ENST00000467326 HNRNPUL2Q1KMD3 747 aaKnown RBP13.83□□□□□ -0.2
VPS50-209ENST00000467326 SLC4A1APQ9BWU0 796 aaKnown RBP13.81□□□□□ -0.2
VPS50-209ENST00000467326 ZNF219Q9P2Y4 722 aaPredicted RBP13.79□□□□□ -0.2
VPS50-209ENST00000467326 TRHP20396 242 aaPredicted RBP13.72□□□□□ -0.21
VPS50-209ENST00000467326 SLC4A2P04920 1241 aa13.69□□□□□ -0.22
VPS50-209ENST00000467326 SAMD1Q6SPF0 538 aaPredicted RBP13.67□□□□□ -0.22
VPS50-209ENST00000467326 ABCB7O75027 752 aa13.59□□□□□ -0.23
VPS50-209ENST00000467326 RBM42Q9BTD8 480 aaKnown RBP13.54□□□□□ -0.24
VPS50-209ENST00000467326 FOXD4L1Q9NU39 408 aa13.39□□□□□ -0.27
VPS50-209ENST00000467326 MYCNP04198 464 aaPredicted RBP13.36□□□□□ -0.27
VPS50-209ENST00000467326 ZBTB22O15209 634 aa13.35□□□□□ -0.27
VPS50-209ENST00000467326 CHRDL2Q6WN34 429 aa13.34□□□□□ -0.27
VPS50-209ENST00000467326 EHMT2Q96KQ7 1210 aa13.34□□□□□ -0.27
VPS50-209ENST00000467326 POLA2Q14181 598 aa13.28□□□□□ -0.28
VPS50-209ENST00000467326 CSRNP3Q8WYN3 585 aa13.18□□□□□ -0.3
VPS50-209ENST00000467326 SP7Q8TDD2 431 aaPredicted RBP13.16□□□□□ -0.3
VPS50-209ENST00000467326 ZBTB12Q9Y330 459 aaPredicted RBP13.16□□□□□ -0.3
VPS50-209ENST00000467326 AKT1S1Q96B36 256 aa13.08□□□□□ -0.32
VPS50-209ENST00000467326 ATXN8OSP0DMR3 200 aa12.92□□□□□ -0.34
VPS50-209ENST00000467326 PIP4P2Q8N4L2 257 aa12.9□□□□□ -0.34
VPS50-209ENST00000467326 REM2Q8IYK8 340 aaPredicted RBP12.87□□□□□ -0.35
VPS50-209ENST00000467326 ATF5Q9Y2D1 282 aaPredicted RBP12.86□□□□□ -0.35
VPS50-209ENST00000467326 OSCARQ8IYS5 282 aa12.82□□□□□ -0.36
VPS50-209ENST00000467326 HAX1O00165 279 aa12.81□□□□□ -0.36
VPS50-209ENST00000467326 FXR2P51116 673 aaKnown RBP eCLIP12.75□□□□□ -0.37
VPS50-209ENST00000467326 PITPNM1O00562 1244 aa12.71□□□□□ -0.37
VPS50-209ENST00000467326 FBLN2P98095 1184 aa12.67□□□□□ -0.38
VPS50-209ENST00000467326 EVX2Q03828 476 aa12.66□□□□□ -0.38
VPS50-209ENST00000467326 SPDYE2BA6NHP3 402 aa12.64□□□□□ -0.39
VPS50-209ENST00000467326 SPDYE6P0CI01 402 aa12.64□□□□□ -0.39
VPS50-209ENST00000467326 SPDYE2Q495Y8 402 aa12.64□□□□□ -0.39
VPS50-209ENST00000467326 SPDYE1Q8NFV5 336 aaPredicted RBP12.52□□□□□ -0.41
VPS50-209ENST00000467326 CLEC11AQ9Y240 323 aa12.45□□□□□ -0.42
VPS50-209ENST00000467326 PRKAR2AP13861 404 aaKnown RBP12.43□□□□□ -0.42
VPS50-209ENST00000467326 ZNF692Q9BU19 519 aaPredicted RBP12.42□□□□□ -0.42
VPS50-209ENST00000467326 C19orf67A6NJJ6 358 aa12.36□□□□□ -0.43
VPS50-209ENST00000467326 LHX8Q68G74 356 aa12.34□□□□□ -0.43
VPS50-209ENST00000467326 SSUH2Q9Y2M2 353 aa12.34□□□□□ -0.43
VPS50-209ENST00000467326 GABBR2O75899 941 aa12.32□□□□□ -0.44
VPS50-209ENST00000467326 MKRN4PQ13434 485 aaPredicted RBP12.31□□□□□ -0.44
VPS50-209ENST00000467326 PRR29P0C7W0 189 aa12.24□□□□□ -0.45
VPS50-209ENST00000467326 PABPN1Q86U42 306 aaKnown RBP eCLIP12.18□□□□□ -0.46
VPS50-209ENST00000467326 CLCN6P51797 869 aa12.14□□□□□ -0.47
VPS50-209ENST00000467326 CHADLQ6NUI6 762 aa12.12□□□□□ -0.47
VPS50-209ENST00000467326 POTEIP0CG38 1075 aa12.08□□□□□ -0.48
VPS50-209ENST00000467326 CD44P16070 742 aaKnown RBP12.03□□□□□ -0.48
VPS50-209ENST00000467326 SPDYE4A6NLX3 237 aa12.02□□□□□ -0.49
VPS50-209ENST00000467326 FARP1Q9Y4F1 1045 aaPredicted RBP12.01□□□□□ -0.49
VPS50-209ENST00000467326 PLSCR2Q9NRY7 297 aa11.99□□□□□ -0.49
VPS50-209ENST00000467326 FKBP8Q14318 412 aa11.96□□□□□ -0.49
VPS50-209ENST00000467326 STAG3Q9UJ98 1225 aa11.94□□□□□ -0.5
VPS50-209ENST00000467326 DCBLD2Q96PD2 775 aa11.91□□□□□ -0.5
VPS50-209ENST00000467326 ZNF579Q8NAF0 562 aaKnown RBP11.83□□□□□ -0.52
VPS50-209ENST00000467326 PAK3O75914 559 aaPredicted RBP11.81□□□□□ -0.52
VPS50-209ENST00000467326 ZRANB1Q9UGI0 708 aa11.81□□□□□ -0.52
VPS50-209ENST00000467326 PROM2Q8N271 834 aa11.8□□□□□ -0.52
VPS50-209ENST00000467326 OTUD5Q96G74 571 aa11.73□□□□□ -0.53
VPS50-209ENST00000467326 CREBZFQ9NS37 354 aa11.73□□□□□ -0.53
VPS50-209ENST00000467326 NPM1P06748 294 aaKnown RBP eCLIP11.72□□□□□ -0.53
VPS50-209ENST00000467326 POTEB2H3BUK9 544 aa11.66□□□□□ -0.54
VPS50-209ENST00000467326 GALR2O43603 387 aaPredicted RBP11.64□□□□□ -0.55
VPS50-209ENST00000467326 POTEMA6NI47 508 aa11.63□□□□□ -0.55
VPS50-209ENST00000467326 POTEGQ6S5H5 508 aa11.59□□□□□ -0.55
VPS50-209ENST00000467326 FBXO3Q9UK99 471 aa11.56□□□□□ -0.56
VPS50-209ENST00000467326 PHF12Q96QT6 1004 aa11.52□□□□□ -0.57
VPS50-209ENST00000467326 PELP1Q8IZL8 1130 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms