RNA–Protein interactions for RNA: ENST00000462787.5

SMC4-204, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2 BASIC

Gene SMC4, Length 5,033 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-204ENST00000462787 COL6A3P12111 3177 aa8.69□□□□□ -1.02
SMC4-204ENST00000462787 H0YAA0 97 aa8.67□□□□□ -1.02
SMC4-204ENST00000462787 UTP20O75691 2785 aaKnown RBP8.66□□□□□ -1.02
SMC4-204ENST00000462787 FLNCQ14315 2725 aa8.66□□□□□ -1.02
SMC4-204ENST00000462787 DMXL2Q8TDJ6 3036 aa8.64□□□□□ -1.03
SMC4-204ENST00000462787 SEC61BP60468 96 aaKnown RBP8.64□□□□□ -1.03
SMC4-204ENST00000462787 C20orf166-AS1Q96NR2 134 aa8.63□□□□□ -1.03
SMC4-204ENST00000462787 COL12A1Q99715 3063 aa8.59□□□□□ -1.03
SMC4-204ENST00000462787 TNRC18O15417 2968 aaPredicted RBP8.58□□□□□ -1.04
SMC4-204ENST00000462787 ITPR2Q14571 2701 aa8.58□□□□□ -1.04
SMC4-204ENST00000462787 HRNRQ86YZ3 2850 aaPredicted RBP8.56□□□□□ -1.04
SMC4-204ENST00000462787 NIPBLQ6KC79 2804 aaeCLIP8.56□□□□□ -1.042e-6■■■■■ 27.8
SMC4-204ENST00000462787 Q5VSD8 79 aa8.56□□□□□ -1.04
SMC4-204ENST00000462787 REV3LO60673 3130 aa8.56□□□□□ -1.04
SMC4-204ENST00000462787 KMT2BQ9UMN6 2715 aaPredicted RBP8.55□□□□□ -1.04
SMC4-204ENST00000462787 KRTAP13-3Q3SY46 172 aa8.55□□□□□ -1.04
SMC4-204ENST00000462787 PLAC4Q8WY50 150 aa8.53□□□□□ -1.04
SMC4-204ENST00000462787 HIVEP1P15822 2718 aa8.52□□□□□ -1.05
SMC4-204ENST00000462787 SPEGQ15772 3267 aa8.49□□□□□ -1.05
SMC4-204ENST00000462787 CFAP47Q6ZTR5 3102 aa8.49□□□□□ -1.05
SMC4-204ENST00000462787 C10orf95Q9H7T3 257 aa8.48□□□□□ -1.05
SMC4-204ENST00000462787 ZANQ9Y493 2812 aa8.48□□□□□ -1.05
SMC4-204ENST00000462787 CELSR2Q9HCU4 2923 aa8.44□□□□□ -1.06
SMC4-204ENST00000462787 KRTAP1-4P0C5Y4 121 aa8.44□□□□□ -1.06
SMC4-204ENST00000462787 M0R2T5 61 aa8.41□□□□□ -1.06
SMC4-204ENST00000462787 P0C880 135 aa8.4□□□□□ -1.06
SMC4-204ENST00000462787 SPTBN5Q9NRC6 3674 aaKnown RBP8.36□□□□□ -1.07
SMC4-204ENST00000462787 PP632Q6XCG6 107 aa8.36□□□□□ -1.07
SMC4-204ENST00000462787 USP34Q70CQ2 3546 aa8.35□□□□□ -1.07
SMC4-204ENST00000462787 DMXL1Q9Y485 3027 aa8.34□□□□□ -1.08
SMC4-204ENST00000462787 DCHS2Q6V1P9 2916 aa8.33□□□□□ -1.08
SMC4-204ENST00000462787 FBN2P35556 2912 aa8.32□□□□□ -1.08
SMC4-204ENST00000462787 LOC400499M0QZD8 3231 aa8.3□□□□□ -1.08
SMC4-204ENST00000462787 EYSQ5T1H1 3165 aa8.29□□□□□ -1.08
SMC4-204ENST00000462787 TNP1P09430 55 aa8.27□□□□□ -1.09
SMC4-204ENST00000462787 NF1P21359 2839 aa8.23□□□□□ -1.09
SMC4-204ENST00000462787 MXRA5Q9NR99 2828 aa8.16□□□□□ -1.1
SMC4-204ENST00000462787 XP32Q5T750 250 aa8.16□□□□□ -1.1
SMC4-204ENST00000462787 TGP01266 2768 aa8.13□□□□□ -1.11
SMC4-204ENST00000462787 KRTAP10-8P60410 259 aa8.07□□□□□ -1.12
SMC4-204ENST00000462787 MYO15AQ9UKN7 3530 aa8.07□□□□□ -1.12
SMC4-204ENST00000462787 TPRXLQ17RH7 258 aa8.05□□□□□ -1.12
SMC4-204ENST00000462787 TENM3Q9P273 2699 aa8.04□□□□□ -1.12
SMC4-204ENST00000462787 TENM4Q6N022 2769 aa8.03□□□□□ -1.12
SMC4-204ENST00000462787 KRTAP12-2P59991 146 aa7.99□□□□□ -1.13
SMC4-204ENST00000462787 CELSR1Q9NYQ6 3014 aa7.98□□□□□ -1.13
SMC4-204ENST00000462787 KRTAP3-1Q9BYR8 98 aa7.95□□□□□ -1.14
SMC4-204ENST00000462787 CRYBG3Q68DQ2 2970 aa7.93□□□□□ -1.14
SMC4-204ENST00000462787 DCHS1Q96JQ0 3298 aa7.93□□□□□ -1.14
SMC4-204ENST00000462787 WDFY3Q8IZQ1 3526 aa7.9□□□□□ -1.14
SMC4-204ENST00000462787 KRTAP12-1P59990 96 aa7.9□□□□□ -1.14
SMC4-204ENST00000462787 CSMD1Q96PZ7 3565 aa7.85□□□□□ -1.15
SMC4-204ENST00000462787 ZFHX4Q86UP3 3567 aa7.83□□□□□ -1.16
SMC4-204ENST00000462787 RELNP78509 3460 aa7.82□□□□□ -1.16
SMC4-204ENST00000462787 PDZD2O15018 2839 aa7.81□□□□□ -1.16
SMC4-204ENST00000462787 KRTAP10-6P60371 365 aaPredicted RBP7.79□□□□□ -1.16
SMC4-204ENST00000462787 KRTAP13-4Q3LI77 160 aa7.77□□□□□ -1.16
SMC4-204ENST00000462787 KRTAP15-1Q3LI76 137 aa7.75□□□□□ -1.17
SMC4-204ENST00000462787 SMG1Q96Q15 3661 aaKnown RBP7.71□□□□□ -1.17
SMC4-204ENST00000462787 TENM1Q9UKZ4 2725 aa7.7□□□□□ -1.18
SMC4-204ENST00000462787 TENM2Q9NT68 2774 aa7.66□□□□□ -1.18
SMC4-204ENST00000462787 DMDP11532 3685 aa7.64□□□□□ -1.19
SMC4-204ENST00000462787 KRTAP21-3Q3LHN1 58 aa7.62□□□□□ -1.19
SMC4-204ENST00000462787 A0A1B0GVY2 172 aa7.62□□□□□ -1.19
SMC4-204ENST00000462787 ASPMQ8IZT6 3477 aa7.61□□□□□ -1.19
SMC4-204ENST00000462787 VWFP04275 2813 aa7.61□□□□□ -1.19
SMC4-204ENST00000462787 PKD1L1Q8TDX9 2849 aa7.57□□□□□ -1.2
SMC4-204ENST00000462787 LAMA5O15230 3695 aa7.54□□□□□ -1.2
SMC4-204ENST00000462787 KRTAP3-2Q9BYR7 98 aa7.54□□□□□ -1.2
SMC4-204ENST00000462787 KRTAP3-3Q9BYR6 98 aa7.47□□□□□ -1.21
SMC4-204ENST00000462787 SVEP1Q4LDE5 3571 aa7.46□□□□□ -1.22
SMC4-204ENST00000462787 SRRM2Q9UQ35 2752 aaKnown RBP7.44□□□□□ -1.22
SMC4-204ENST00000462787 MUC3AQ02505 3323 aa7.43□□□□□ -1.22
SMC4-204ENST00000462787 FBN3Q75N90 2809 aa7.41□□□□□ -1.22
SMC4-204ENST00000462787 SPENQ96T58 3664 aaKnown RBP7.41□□□□□ -1.22
SMC4-204ENST00000462787 ANK3Q12955 4377 aaKnown RBP7.41□□□□□ -1.22
SMC4-204ENST00000462787 KRTAP10-10P60014 251 aa7.4□□□□□ -1.23
SMC4-204ENST00000462787 PRO2289Q9P1D8 64 aa7.37□□□□□ -1.23
SMC4-204ENST00000462787 FBN1P35555 2871 aaKnown RBP7.36□□□□□ -1.23
SMC4-204ENST00000462787 MEGF8Q7Z7M0 2845 aa7.33□□□□□ -1.24
SMC4-204ENST00000462787 INE1O15225 51 aa7.31□□□□□ -1.24
SMC4-204ENST00000462787 ZFHX3Q15911 3703 aa7.31□□□□□ -1.24
SMC4-204ENST00000462787 OTOGQ6ZRI0 2925 aa7.28□□□□□ -1.24
SMC4-204ENST00000462787 CUBNO60494 3623 aa7.2□□□□□ -1.26
SMC4-204ENST00000462787 NBPF19A0A087WUL8 3843 aa7.18□□□□□ -1.26
SMC4-204ENST00000462787 BSNQ9UPA5 3926 aa7.18□□□□□ -1.26
SMC4-204ENST00000462787 KRTAP23-1A1A580 65 aa7.11□□□□□ -1.27
SMC4-204ENST00000462787 TRRAPQ9Y4A5 3859 aa7.11□□□□□ -1.27
SMC4-204ENST00000462787 KRTAP10-4P60372 401 aaPredicted RBP7.05□□□□□ -1.28
SMC4-204ENST00000462787 HUWE1Q7Z6Z7 4374 aaKnown RBP7.04□□□□□ -1.28
SMC4-204ENST00000462787 COL7A1Q02388 2944 aa7.02□□□□□ -1.28
SMC4-204ENST00000462787 MT1HL1P0DM35 61 aa7□□□□□ -1.29
SMC4-204ENST00000462787 CSMD2Q7Z408 3487 aa6.99□□□□□ -1.29
SMC4-204ENST00000462787 VPS13CQ709C8 3753 aa6.94□□□□□ -1.3
SMC4-204ENST00000462787 ALMS1Q8TCU4 4167 aa6.84□□□□□ -1.31
SMC4-204ENST00000462787 LORP23490 312 aaPredicted RBP6.81□□□□□ -1.32
SMC4-204ENST00000462787 KRTAP10-12P60413 245 aa6.79□□□□□ -1.32
SMC4-204ENST00000462787 KRTAP12-3P60328 96 aa6.74□□□□□ -1.33
SMC4-204ENST00000462787 LCE3AQ5TA76 89 aa6.73□□□□□ -1.33
SMC4-204ENST00000462787 AKAP9Q99996 3911 aa6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms