RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 TACC2O95359 2948 aa4.33□□□□□ -1.72
NEDD9-204ENST00000448183 ASH1LQ9NR48 2969 aaKnown RBP4.33□□□□□ -1.72
NEDD9-204ENST00000448183 SPEGQ15772 3267 aa4.32□□□□□ -1.72
NEDD9-204ENST00000448183 LAMA1P25391 3075 aa4.32□□□□□ -1.72
NEDD9-204ENST00000448183 FRYLO94915 3013 aa4.32□□□□□ -1.72
NEDD9-204ENST00000448183 DMXL2Q8TDJ6 3036 aa4.32□□□□□ -1.72
NEDD9-204ENST00000448183 UTP20O75691 2785 aaKnown RBP4.32□□□□□ -1.72
NEDD9-204ENST00000448183 HIVEP1P15822 2718 aa4.32□□□□□ -1.72
NEDD9-204ENST00000448183 KMT2BQ9UMN6 2715 aaPredicted RBP4.31□□□□□ -1.72
NEDD9-204ENST00000448183 FLNCQ14315 2725 aa4.31□□□□□ -1.72
NEDD9-204ENST00000448183 C20orf166-AS1Q96NR2 134 aa4.31□□□□□ -1.72
NEDD9-204ENST00000448183 NIPBLQ6KC79 2804 aaeCLIP4.3□□□□□ -1.72
NEDD9-204ENST00000448183 SZT2Q5T011 3432 aa4.26□□□□□ -1.73
NEDD9-204ENST00000448183 TNP1P09430 55 aa4.25□□□□□ -1.73
NEDD9-204ENST00000448183 CFAP47Q6ZTR5 3102 aa4.23□□□□□ -1.73
NEDD9-204ENST00000448183 LRBAP50851 2863 aa4.23□□□□□ -1.73
NEDD9-204ENST00000448183 CELSR2Q9HCU4 2923 aa4.23□□□□□ -1.73
NEDD9-204ENST00000448183 TENM4Q6N022 2769 aa4.23□□□□□ -1.73
NEDD9-204ENST00000448183 ATMQ13315 3056 aa4.23□□□□□ -1.73
NEDD9-204ENST00000448183 COL6A3P12111 3177 aa4.21□□□□□ -1.73
NEDD9-204ENST00000448183 COL12A1Q99715 3063 aa4.2□□□□□ -1.74
NEDD9-204ENST00000448183 ADGRG4Q8IZF6 3080 aa4.2□□□□□ -1.74
NEDD9-204ENST00000448183 C10orf95Q9H7T3 257 aa4.2□□□□□ -1.74
NEDD9-204ENST00000448183 PP632Q6XCG6 107 aa4.18□□□□□ -1.74
NEDD9-204ENST00000448183 TENM3Q9P273 2699 aa4.17□□□□□ -1.74
NEDD9-204ENST00000448183 SPTBN5Q9NRC6 3674 aaKnown RBP4.17□□□□□ -1.74
NEDD9-204ENST00000448183 BOD1L1Q8NFC6 3051 aa4.16□□□□□ -1.74
NEDD9-204ENST00000448183 ZZEF1O43149 2961 aa4.16□□□□□ -1.74
NEDD9-204ENST00000448183 H0YAA0 97 aa4.16□□□□□ -1.74
NEDD9-204ENST00000448183 DCHS2Q6V1P9 2916 aa4.16□□□□□ -1.74
NEDD9-204ENST00000448183 DMXL1Q9Y485 3027 aa4.15□□□□□ -1.74
NEDD9-204ENST00000448183 KRTAP1-4P0C5Y4 121 aa4.14□□□□□ -1.75
NEDD9-204ENST00000448183 EYSQ5T1H1 3165 aa4.13□□□□□ -1.75
NEDD9-204ENST00000448183 P0C880 135 aa4.12□□□□□ -1.75
NEDD9-204ENST00000448183 MYO15AQ9UKN7 3530 aa4.11□□□□□ -1.75
NEDD9-204ENST00000448183 ZANQ9Y493 2812 aa4.11□□□□□ -1.75
NEDD9-204ENST00000448183 XP32Q5T750 250 aa4.1□□□□□ -1.75
NEDD9-204ENST00000448183 DCHS1Q96JQ0 3298 aa4.1□□□□□ -1.75
NEDD9-204ENST00000448183 CRYBG3Q68DQ2 2970 aa4.1□□□□□ -1.75
NEDD9-204ENST00000448183 ZFHX3Q15911 3703 aa4.09□□□□□ -1.76
NEDD9-204ENST00000448183 NF1P21359 2839 aa4.07□□□□□ -1.76
NEDD9-204ENST00000448183 TENM1Q9UKZ4 2725 aa4.07□□□□□ -1.76
NEDD9-204ENST00000448183 KRTAP10-8P60410 259 aa4.06□□□□□ -1.76
NEDD9-204ENST00000448183 MUC3AQ02505 3323 aa4.05□□□□□ -1.76
NEDD9-204ENST00000448183 WDFY3Q8IZQ1 3526 aa4.05□□□□□ -1.76
NEDD9-204ENST00000448183 TGP01266 2768 aa4.04□□□□□ -1.76
NEDD9-204ENST00000448183 FBN2P35556 2912 aa4□□□□□ -1.77
NEDD9-204ENST00000448183 TPRXLQ17RH7 258 aa4□□□□□ -1.77
NEDD9-204ENST00000448183 A0A1B0GVY2 172 aa3.99□□□□□ -1.77
NEDD9-204ENST00000448183 KRTAP13-3Q3SY46 172 aa3.98□□□□□ -1.77
NEDD9-204ENST00000448183 HRNRQ86YZ3 2850 aaPredicted RBP3.98□□□□□ -1.77
NEDD9-204ENST00000448183 LOC400499M0QZD8 3231 aa3.98□□□□□ -1.77
NEDD9-204ENST00000448183 PDZD2O15018 2839 aa3.94□□□□□ -1.78
NEDD9-204ENST00000448183 CSMD1Q96PZ7 3565 aa3.94□□□□□ -1.78
NEDD9-204ENST00000448183 ASPMQ8IZT6 3477 aa3.93□□□□□ -1.78
NEDD9-204ENST00000448183 TENM2Q9NT68 2774 aa3.92□□□□□ -1.78
NEDD9-204ENST00000448183 KRTAP10-10P60014 251 aa3.92□□□□□ -1.78
NEDD9-204ENST00000448183 ZFHX4Q86UP3 3567 aa3.9□□□□□ -1.78
NEDD9-204ENST00000448183 PRO2289Q9P1D8 64 aa3.9□□□□□ -1.79
NEDD9-204ENST00000448183 CELSR1Q9NYQ6 3014 aa3.89□□□□□ -1.79
NEDD9-204ENST00000448183 PKD1L1Q8TDX9 2849 aa3.89□□□□□ -1.79
NEDD9-204ENST00000448183 KRTAP12-2P59991 146 aa3.87□□□□□ -1.79
NEDD9-204ENST00000448183 DMDP11532 3685 aa3.85□□□□□ -1.79
NEDD9-204ENST00000448183 MXRA5Q9NR99 2828 aa3.84□□□□□ -1.8
NEDD9-204ENST00000448183 CUBNO60494 3623 aa3.83□□□□□ -1.8
NEDD9-204ENST00000448183 VWFP04275 2813 aa3.83□□□□□ -1.8
NEDD9-204ENST00000448183 KRTAP13-4Q3LI77 160 aa3.83□□□□□ -1.8
NEDD9-204ENST00000448183 KRTAP12-1P59990 96 aa3.82□□□□□ -1.8
NEDD9-204ENST00000448183 RELNP78509 3460 aa3.79□□□□□ -1.8
NEDD9-204ENST00000448183 SMG1Q96Q15 3661 aaKnown RBP3.78□□□□□ -1.8
NEDD9-204ENST00000448183 KRTAP3-1Q9BYR8 98 aa3.78□□□□□ -1.8
NEDD9-204ENST00000448183 SRRM2Q9UQ35 2752 aaKnown RBP3.75□□□□□ -1.81
NEDD9-204ENST00000448183 LAMA5O15230 3695 aa3.75□□□□□ -1.81
NEDD9-204ENST00000448183 SVEP1Q4LDE5 3571 aa3.74□□□□□ -1.81
NEDD9-204ENST00000448183 SPENQ96T58 3664 aaKnown RBP3.74□□□□□ -1.81
NEDD9-204ENST00000448183 KRTAP10-6P60371 365 aaPredicted RBP3.7□□□□□ -1.82
NEDD9-204ENST00000448183 FBN3Q75N90 2809 aa3.67□□□□□ -1.82
NEDD9-204ENST00000448183 FBN1P35555 2871 aaKnown RBP3.65□□□□□ -1.83
NEDD9-204ENST00000448183 KRTAP15-1Q3LI76 137 aa3.64□□□□□ -1.83
NEDD9-204ENST00000448183 MEGF8Q7Z7M0 2845 aa3.63□□□□□ -1.83
NEDD9-204ENST00000448183 COL7A1Q02388 2944 aa3.59□□□□□ -1.83
NEDD9-204ENST00000448183 INE1O15225 51 aa3.56□□□□□ -1.84
NEDD9-204ENST00000448183 KRTAP3-2Q9BYR7 98 aa3.55□□□□□ -1.84
NEDD9-204ENST00000448183 OTOGQ6ZRI0 2925 aa3.53□□□□□ -1.84
NEDD9-204ENST00000448183 BSNQ9UPA5 3926 aa3.53□□□□□ -1.84
NEDD9-204ENST00000448183 KRTAP3-3Q9BYR6 98 aa3.53□□□□□ -1.84
NEDD9-204ENST00000448183 ANK3Q12955 4377 aaKnown RBP3.49□□□□□ -1.85
NEDD9-204ENST00000448183 MT1HL1P0DM35 61 aa3.47□□□□□ -1.85
NEDD9-204ENST00000448183 CSMD2Q7Z408 3487 aa3.46□□□□□ -1.86
NEDD9-204ENST00000448183 KRTAP10-12P60413 245 aa3.45□□□□□ -1.86
NEDD9-204ENST00000448183 NBPF19A0A087WUL8 3843 aa3.44□□□□□ -1.86
NEDD9-204ENST00000448183 ALMS1Q8TCU4 4167 aa3.41□□□□□ -1.86
NEDD9-204ENST00000448183 KRTAP23-1A1A580 65 aa3.41□□□□□ -1.86
NEDD9-204ENST00000448183 KRTAP12-3P60328 96 aa3.39□□□□□ -1.87
NEDD9-204ENST00000448183 AKAP9Q99996 3911 aa3.37□□□□□ -1.87
NEDD9-204ENST00000448183 KRTAP10-4P60372 401 aaPredicted RBP3.37□□□□□ -1.87
NEDD9-204ENST00000448183 CRCT1Q9UGL9 99 aa3.34□□□□□ -1.87
NEDD9-204ENST00000448183 LCE3AQ5TA76 89 aa3.33□□□□□ -1.88
NEDD9-204ENST00000448183 HUWE1Q7Z6Z7 4374 aaKnown RBP3.3□□□□□ -1.88
NEDD9-204ENST00000448183 LORP23490 312 aaPredicted RBP3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms