RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 TNRC18O15417 2968 aaPredicted RBP0.87□□□□□ -2.27
VPS50-206ENST00000443443 DEFB110Q30KQ9 67 aa0.86□□□□□ -2.27
VPS50-206ENST00000443443 PTPN13Q12923 2485 aa0.84□□□□□ -2.27
VPS50-206ENST00000443443 H3BSH0 61 aa0.84□□□□□ -2.27
VPS50-206ENST00000443443 SPART-AS1P0CW21 52 aa0.84□□□□□ -2.27
VPS50-206ENST00000443443 UNC79Q9P2D8 2635 aa0.82□□□□□ -2.28
VPS50-206ENST00000443443 SPRR2DP22532 72 aa0.82□□□□□ -2.28
VPS50-206ENST00000443443 DEFB104AQ8WTQ1 72 aa0.82□□□□□ -2.28
VPS50-206ENST00000443443 SRRM2Q9UQ35 2752 aaKnown RBP0.81□□□□□ -2.28
VPS50-206ENST00000443443 ZFYVE26Q68DK2 2539 aa0.81□□□□□ -2.28
VPS50-206ENST00000443443 AHNAKQ09666 5890 aaKnown RBP0.81□□□□□ -2.28
VPS50-206ENST00000443443 FAT2Q9NYQ8 4349 aa0.8□□□□□ -2.28
VPS50-206ENST00000443443 PRKDCP78527 4128 aaKnown RBP0.8□□□□□ -2.28
VPS50-206ENST00000443443 KRTAP21-1Q3LI58 79 aa0.8□□□□□ -2.28
VPS50-206ENST00000443443 HIVEP3Q5T1R4 2406 aa0.8□□□□□ -2.28
VPS50-206ENST00000443443 UBR5O95071 2799 aaPredicted RBP0.79□□□□□ -2.28
VPS50-206ENST00000443443 MAP1BP46821 2468 aaKnown RBP0.79□□□□□ -2.28
VPS50-206ENST00000443443 PKD1L1Q8TDX9 2849 aa0.79□□□□□ -2.28
VPS50-206ENST00000443443 K7EIM0 57 aa0.78□□□□□ -2.28
VPS50-206ENST00000443443 NBASA2RRP1 2371 aa0.78□□□□□ -2.28
VPS50-206ENST00000443443 ACANP16112 2415 aa0.77□□□□□ -2.29
VPS50-206ENST00000443443 SPRR2BP35325 72 aa0.77□□□□□ -2.29
VPS50-206ENST00000443443 WNK1Q9H4A3 2382 aa0.77□□□□□ -2.29
VPS50-206ENST00000443443 LYSTQ99698 3801 aa0.76□□□□□ -2.29
VPS50-206ENST00000443443 COL6A5A8TX70 2615 aa0.75□□□□□ -2.29
VPS50-206ENST00000443443 NAV2Q8IVL1 2488 aa0.74□□□□□ -2.29
VPS50-206ENST00000443443 SETXQ7Z333 2677 aaKnown RBP0.72□□□□□ -2.29
VPS50-206ENST00000443443 MACF1Q9UPN3 7388 aaKnown RBP0.72□□□□□ -2.29
VPS50-206ENST00000443443 APC2O95996 2303 aa0.72□□□□□ -2.29
VPS50-206ENST00000443443 DMBT1Q9UGM3 2413 aaPredicted RBP0.72□□□□□ -2.29
VPS50-206ENST00000443443 HUWE1Q7Z6Z7 4374 aaKnown RBP0.72□□□□□ -2.29
VPS50-206ENST00000443443 NF1P21359 2839 aa0.71□□□□□ -2.3
VPS50-206ENST00000443443 TMEM167AQ8TBQ9 72 aa0.71□□□□□ -2.3
VPS50-206ENST00000443443 VPS13BQ7Z7G8 4022 aa0.7□□□□□ -2.3
VPS50-206ENST00000443443 PDZD2O15018 2839 aa0.7□□□□□ -2.3
VPS50-206ENST00000443443 KMT2AQ03164 3969 aa0.7□□□□□ -2.3
VPS50-206ENST00000443443 GCN1Q92616 2671 aaKnown RBP0.7□□□□□ -2.3
VPS50-206ENST00000443443 SPTBN4Q9H254 2564 aa0.69□□□□□ -2.3
VPS50-206ENST00000443443 MTORP42345 2549 aa0.69□□□□□ -2.3
VPS50-206ENST00000443443 ACACAQ13085 2346 aa0.69□□□□□ -2.3
VPS50-206ENST00000443443 SETD2Q9BYW2 2564 aaPredicted RBP0.68□□□□□ -2.3
VPS50-206ENST00000443443 SPRR2AP35326 72 aa0.68□□□□□ -2.3
VPS50-206ENST00000443443 STAB1Q9NY15 2570 aa0.68□□□□□ -2.3
VPS50-206ENST00000443443 FLNCQ14315 2725 aa0.67□□□□□ -2.3
VPS50-206ENST00000443443 KRTAP8-1Q8IUC2 63 aa0.67□□□□□ -2.3
VPS50-206ENST00000443443 MT1AP04731 61 aa0.66□□□□□ -2.3
VPS50-206ENST00000443443 NSD1Q96L73 2696 aaPredicted RBP0.65□□□□□ -2.3
VPS50-206ENST00000443443 CHD7Q9P2D1 2997 aa0.65□□□□□ -2.31
VPS50-206ENST00000443443 NCOR2Q9Y618 2525 aa0.65□□□□□ -2.31
VPS50-206ENST00000443443 KRTAP6-2Q3LI66 62 aa0.65□□□□□ -2.31
VPS50-206ENST00000443443 SACSQ9NZJ4 4579 aa0.64□□□□□ -2.31
VPS50-206ENST00000443443 RHPN1-AS1Q9BWJ2 59 aa0.64□□□□□ -2.31
VPS50-206ENST00000443443 FLNBO75369 2602 aaKnown RBP0.64□□□□□ -2.31
VPS50-206ENST00000443443 SONP18583 2426 aaKnown RBP0.64□□□□□ -2.31
VPS50-206ENST00000443443 DMXL1Q9Y485 3027 aa0.63□□□□□ -2.31
VPS50-206ENST00000443443 HRNRQ86YZ3 2850 aaPredicted RBP0.63□□□□□ -2.31
VPS50-206ENST00000443443 MYCBP2O75592 4640 aa0.63□□□□□ -2.31
VPS50-206ENST00000443443 USP24Q9UPU5 2620 aa0.63□□□□□ -2.31
VPS50-206ENST00000443443 CACNA1AO00555 2505 aa0.63□□□□□ -2.31
VPS50-206ENST00000443443 CUBNO60494 3623 aa0.63□□□□□ -2.31
VPS50-206ENST00000443443 ZZEF1O43149 2961 aa0.63□□□□□ -2.31
VPS50-206ENST00000443443 LRP1Q07954 4544 aaKnown RBP0.63□□□□□ -2.31
VPS50-206ENST00000443443 LPAP08519 4548 aa0.62□□□□□ -2.31
VPS50-206ENST00000443443 SYNE1Q8NF91 8797 aaKnown RBP0.62□□□□□ -2.31
VPS50-206ENST00000443443 CCDC168Q8NDH2 2452 aa0.62□□□□□ -2.31
VPS50-206ENST00000443443 TACC2O95359 2948 aa0.61□□□□□ -2.31
VPS50-206ENST00000443443 DNAH11Q96DT5 4516 aa0.61□□□□□ -2.31
VPS50-206ENST00000443443 RIF1Q5UIP0 2472 aaKnown RBP0.6□□□□□ -2.31
VPS50-206ENST00000443443 RPL39P5Q59GN2 51 aa0.6□□□□□ -2.31
VPS50-206ENST00000443443 MUC5ACP98088 5654 aa0.6□□□□□ -2.31
VPS50-206ENST00000443443 DNAH3Q8TD57 4116 aa0.59□□□□□ -2.31
VPS50-206ENST00000443443 COL7A1Q02388 2944 aa0.59□□□□□ -2.31
VPS50-206ENST00000443443 PKD1P98161 4303 aa0.59□□□□□ -2.31
VPS50-206ENST00000443443 H3BUX3 64 aa0.59□□□□□ -2.31
VPS50-206ENST00000443443 ANKRD11Q6UB99 2663 aaPredicted RBP0.59□□□□□ -2.32
VPS50-206ENST00000443443 LRRK2Q5S007 2527 aa0.59□□□□□ -2.32
VPS50-206ENST00000443443 ANKHD1Q8IWZ3 2542 aaKnown RBP0.59□□□□□ -2.32
VPS50-206ENST00000443443 FAM186AA6NE01 2351 aa0.59□□□□□ -2.32
VPS50-206ENST00000443443 TENM2Q9NT68 2774 aa0.58□□□□□ -2.32
VPS50-206ENST00000443443 RANBP2P49792 3224 aaKnown RBP0.58□□□□□ -2.32
VPS50-206ENST00000443443 UTP20O75691 2785 aaKnown RBP0.58□□□□□ -2.32
VPS50-206ENST00000443443 EPG5Q9HCE0 2579 aa0.57□□□□□ -2.32
VPS50-206ENST00000443443 ACACBO00763 2458 aa0.57□□□□□ -2.32
VPS50-206ENST00000443443 SYNE2Q8WXH0 6885 aaKnown RBP0.56□□□□□ -2.32
VPS50-206ENST00000443443 SPRR2EP22531 72 aa0.56□□□□□ -2.32
VPS50-206ENST00000443443 FRYQ5TBA9 3013 aa0.56□□□□□ -2.32
VPS50-206ENST00000443443 COL12A1Q99715 3063 aa0.56□□□□□ -2.32
VPS50-206ENST00000443443 HECTD4Q9Y4D8 3996 aa0.55□□□□□ -2.32
VPS50-206ENST00000443443 ANK3Q12955 4377 aaKnown RBP0.55□□□□□ -2.32
VPS50-206ENST00000443443 CRYBG3Q68DQ2 2970 aa0.55□□□□□ -2.32
VPS50-206ENST00000443443 VPS13DQ5THJ4 4388 aa0.55□□□□□ -2.32
VPS50-206ENST00000443443 SMR3BP02814 79 aaPredicted RBP0.55□□□□□ -2.32
VPS50-206ENST00000443443 SPRR2FQ96RM1 72 aa0.55□□□□□ -2.32
VPS50-206ENST00000443443 SPENQ96T58 3664 aaKnown RBP0.54□□□□□ -2.32
VPS50-206ENST00000443443 FSIP2Q5CZC0 6907 aa0.54□□□□□ -2.32
VPS50-206ENST00000443443 DCHS2Q6V1P9 2916 aa0.54□□□□□ -2.32
VPS50-206ENST00000443443 PKHD1L1Q86WI1 4243 aa0.54□□□□□ -2.32
VPS50-206ENST00000443443 A0A096LNI7 61 aa0.54□□□□□ -2.32
VPS50-206ENST00000443443 DEFB108AA8MXU0 73 aa0.54□□□□□ -2.32
VPS50-206ENST00000443443 SPG11Q96JI7 2443 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms