RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 AEBP2Q6ZN18 517 aaPredicted RBP28.64■■■□□ 2.18
VPS50-206ENST00000443443 CHIC1Q5VXU3 224 aa27.19■■□□□ 1.94
VPS50-206ENST00000443443 SENP3Q9H4L4 574 aaPredicted RBP24.3■■□□□ 1.48
VPS50-206ENST00000443443 PHF23Q9BUL5 403 aaPredicted RBP24.04■■□□□ 1.44
VPS50-206ENST00000443443 FOXD1Q16676 465 aa22.72■■□□□ 1.23
VPS50-206ENST00000443443 PLPPR3Q6T4P5 718 aa21.98■■□□□ 1.11
VPS50-206ENST00000443443 PPP6R1Q9UPN7 881 aa21.31■■□□□ 1
VPS50-206ENST00000443443 ADRA2BP18089 450 aa21.24■□□□□ 0.99
VPS50-206ENST00000443443 PIAS4Q8N2W9 510 aaPredicted RBP21.23■□□□□ 0.99
VPS50-206ENST00000443443 MSH5O43196 834 aa21.16■□□□□ 0.98
VPS50-206ENST00000443443 POTEDQ86YR6 584 aa20.69■□□□□ 0.9
VPS50-206ENST00000443443 MAPK8IP2Q13387 824 aaPredicted RBP19.52■□□□□ 0.72
VPS50-206ENST00000443443 SCAF1Q9H7N4 1312 aaKnown RBP19.42■□□□□ 0.7
VPS50-206ENST00000443443 PPP4R3CPQ6ZMV5 832 aa19.34■□□□□ 0.69
VPS50-206ENST00000443443 DMRT2Q9Y5R5 561 aa19.3■□□□□ 0.68
VPS50-206ENST00000443443 CNKSR2Q8WXI2 1034 aa18.85■□□□□ 0.61
VPS50-206ENST00000443443 NCBP3Q53F19 620 aaKnown RBP18.78■□□□□ 0.6
VPS50-206ENST00000443443 HOXD11P31277 338 aaPredicted RBP18.59■□□□□ 0.57
VPS50-206ENST00000443443 DCAF8L1A6NGE4 600 aa18.56■□□□□ 0.56
VPS50-206ENST00000443443 KCNA4P22459 653 aa18.55■□□□□ 0.56
VPS50-206ENST00000443443 RNF216Q9NWF9 866 aaPredicted RBP18.53■□□□□ 0.56
VPS50-206ENST00000443443 NPM3O75607 178 aaKnown RBP18.44■□□□□ 0.54
VPS50-206ENST00000443443 CACNB1Q02641 598 aaPredicted RBP18.18■□□□□ 0.5
VPS50-206ENST00000443443 RNF39Q9H2S5 420 aa18.11■□□□□ 0.49
VPS50-206ENST00000443443 DNAJC5BQ9UF47 199 aa17.84■□□□□ 0.45
VPS50-206ENST00000443443 C1QBPQ07021 282 aaKnown RBP17.78■□□□□ 0.44
VPS50-206ENST00000443443 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.78■□□□□ 0.44
VPS50-206ENST00000443443 SLC4A1APQ9BWU0 796 aaKnown RBP17.64■□□□□ 0.41
VPS50-206ENST00000443443 SLC4A2P04920 1241 aa17.47■□□□□ 0.39
VPS50-206ENST00000443443 U3KPZ7 1027 aaPredicted RBP17.41■□□□□ 0.38
VPS50-206ENST00000443443 SPINK5Q9NQ38 1064 aaPredicted RBP17.18■□□□□ 0.34
VPS50-206ENST00000443443 FOXD4L1Q9NU39 408 aa17.15■□□□□ 0.34
VPS50-206ENST00000443443 CAPN15O75808 1086 aa17.09■□□□□ 0.33
VPS50-206ENST00000443443 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.08■□□□□ 0.32
VPS50-206ENST00000443443 HNRNPUL2Q1KMD3 747 aaKnown RBP17.08■□□□□ 0.32
VPS50-206ENST00000443443 MYCNP04198 464 aaPredicted RBP17.06■□□□□ 0.32
VPS50-206ENST00000443443 ZBTB22O15209 634 aa17.01■□□□□ 0.31
VPS50-206ENST00000443443 SAMD1Q6SPF0 538 aaPredicted RBP17■□□□□ 0.31
VPS50-206ENST00000443443 DSG3P32926 999 aa16.98■□□□□ 0.31
VPS50-206ENST00000443443 APLP2Q06481 763 aa16.98■□□□□ 0.31
VPS50-206ENST00000443443 TRHP20396 242 aaPredicted RBP16.86■□□□□ 0.29
VPS50-206ENST00000443443 EHMT2Q96KQ7 1210 aa16.83■□□□□ 0.28
VPS50-206ENST00000443443 ZNF219Q9P2Y4 722 aaPredicted RBP16.77■□□□□ 0.28
VPS50-206ENST00000443443 ABCB7O75027 752 aa16.76■□□□□ 0.27
VPS50-206ENST00000443443 CSRNP3Q8WYN3 585 aa16.7■□□□□ 0.26
VPS50-206ENST00000443443 ATF5Q9Y2D1 282 aaPredicted RBP16.63■□□□□ 0.25
VPS50-206ENST00000443443 ATXN8OSP0DMR3 200 aa16.55■□□□□ 0.24
VPS50-206ENST00000443443 POLA2Q14181 598 aa16.49■□□□□ 0.23
VPS50-206ENST00000443443 POTEHQ6S545 545 aa16.2■□□□□ 0.18
VPS50-206ENST00000443443 ZBTB12Q9Y330 459 aaPredicted RBP16.15■□□□□ 0.18
VPS50-206ENST00000443443 RBM42Q9BTD8 480 aaKnown RBP16.12■□□□□ 0.17
VPS50-206ENST00000443443 FBLN2P98095 1184 aa16.01■□□□□ 0.15
VPS50-206ENST00000443443 OSCARQ8IYS5 282 aa15.91■□□□□ 0.14
VPS50-206ENST00000443443 MKRN4PQ13434 485 aaPredicted RBP15.86■□□□□ 0.13
VPS50-206ENST00000443443 CHRDL2Q6WN34 429 aa15.82■□□□□ 0.12
VPS50-206ENST00000443443 AKT1S1Q96B36 256 aa15.78■□□□□ 0.12
VPS50-206ENST00000443443 SPDYE2BA6NHP3 402 aa15.68■□□□□ 0.1
VPS50-206ENST00000443443 SPDYE6P0CI01 402 aa15.68■□□□□ 0.1
VPS50-206ENST00000443443 SPDYE2Q495Y8 402 aa15.68■□□□□ 0.1
VPS50-206ENST00000443443 REM2Q8IYK8 340 aaPredicted RBP15.68■□□□□ 0.1
VPS50-206ENST00000443443 ZNF692Q9BU19 519 aaPredicted RBP15.64■□□□□ 0.09
VPS50-206ENST00000443443 PITPNM1O00562 1244 aa15.55■□□□□ 0.08
VPS50-206ENST00000443443 PIP4P2Q8N4L2 257 aa15.48■□□□□ 0.07
VPS50-206ENST00000443443 SSUH2Q9Y2M2 353 aa15.48■□□□□ 0.07
VPS50-206ENST00000443443 SPDYE4A6NLX3 237 aa15.43■□□□□ 0.06
VPS50-206ENST00000443443 PABPN1Q86U42 306 aaKnown RBP eCLIP15.41■□□□□ 0.06
VPS50-206ENST00000443443 FXR2P51116 673 aaKnown RBP eCLIP15.36■□□□□ 0.05
VPS50-206ENST00000443443 CLEC11AQ9Y240 323 aa15.35■□□□□ 0.05
VPS50-206ENST00000443443 SPDYE1Q8NFV5 336 aaPredicted RBP15.33■□□□□ 0.04
VPS50-206ENST00000443443 SP7Q8TDD2 431 aaPredicted RBP15.19■□□□□ 0.02
VPS50-206ENST00000443443 FKBP8Q14318 412 aa15.18■□□□□ 0.02
VPS50-206ENST00000443443 HAX1O00165 279 aa15.16■□□□□ 0.02
VPS50-206ENST00000443443 PRR29P0C7W0 189 aa15.14■□□□□ 0.01
VPS50-206ENST00000443443 PRKAR2AP13861 404 aaKnown RBP15.12■□□□□ 0.01
VPS50-206ENST00000443443 STAG3Q9UJ98 1225 aa15.08■□□□□ 0
VPS50-206ENST00000443443 EVX2Q03828 476 aa15.06■□□□□ 0
VPS50-206ENST00000443443 CHADLQ6NUI6 762 aa15.02■□□□□ -0
VPS50-206ENST00000443443 PROM2Q8N271 834 aa14.99□□□□□ -0.01
VPS50-206ENST00000443443 C19orf67A6NJJ6 358 aa14.87□□□□□ -0.03
VPS50-206ENST00000443443 CREBZFQ9NS37 354 aa14.79□□□□□ -0.04
VPS50-206ENST00000443443 FARP1Q9Y4F1 1045 aaPredicted RBP14.75□□□□□ -0.05
VPS50-206ENST00000443443 MIER1Q8N108 512 aa14.74□□□□□ -0.05
VPS50-206ENST00000443443 FBXO3Q9UK99 471 aa14.72□□□□□ -0.05
VPS50-206ENST00000443443 PLEKHG5O94827 1062 aa14.69□□□□□ -0.06
VPS50-206ENST00000443443 PLCD3Q8N3E9 789 aa14.68□□□□□ -0.06
VPS50-206ENST00000443443 GABBR2O75899 941 aa14.66□□□□□ -0.06
VPS50-206ENST00000443443 CD44P16070 742 aaKnown RBP14.64□□□□□ -0.07
VPS50-206ENST00000443443 NPM1P06748 294 aaKnown RBP eCLIP14.61□□□□□ -0.07
VPS50-206ENST00000443443 MNX1P50219 401 aaPredicted RBP14.55□□□□□ -0.08
VPS50-206ENST00000443443 VASPP50552 380 aaPredicted RBP14.49□□□□□ -0.09
VPS50-206ENST00000443443 ZBTB47Q9UFB7 747 aaPredicted RBP14.48□□□□□ -0.09
VPS50-206ENST00000443443 PAK3O75914 559 aaPredicted RBP14.46□□□□□ -0.09
VPS50-206ENST00000443443 ZRANB1Q9UGI0 708 aa14.45□□□□□ -0.1
VPS50-206ENST00000443443 KLHL34Q8N239 644 aa14.43□□□□□ -0.1
VPS50-206ENST00000443443 POTEIP0CG38 1075 aa14.4□□□□□ -0.1
VPS50-206ENST00000443443 ZNF579Q8NAF0 562 aaKnown RBP14.4□□□□□ -0.1
VPS50-206ENST00000443443 TSPYL2Q9H2G4 693 aaPredicted RBP14.39□□□□□ -0.11
VPS50-206ENST00000443443 RASEFQ8IZ41 740 aa14.31□□□□□ -0.12
VPS50-206ENST00000443443 PHF12Q96QT6 1004 aa14.31□□□□□ -0.12
VPS50-206ENST00000443443 GALR2O43603 387 aaPredicted RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms