RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 LRBAP50851 2863 aa6.65□□□□□ -1.35
NEK1-201ENST00000439128 VCANP13611 3396 aa6.63□□□□□ -1.35
NEK1-201ENST00000439128 XP32Q5T750 250 aa6.62□□□□□ -1.35
NEK1-201ENST00000439128 BOD1L1Q8NFC6 3051 aa6.61□□□□□ -1.35
NEK1-201ENST00000439128 NBEAQ8NFP9 2946 aa6.59□□□□□ -1.36
NEK1-201ENST00000439128 SPTBN5Q9NRC6 3674 aaKnown RBP6.58□□□□□ -1.36
NEK1-201ENST00000439128 KRTAP1-4P0C5Y4 121 aa6.58□□□□□ -1.36
NEK1-201ENST00000439128 Q5VV11 94 aa6.58□□□□□ -1.36
NEK1-201ENST00000439128 CYSTM1Q9H1C7 97 aa6.58□□□□□ -1.36
NEK1-201ENST00000439128 KALRNO60229 2985 aa6.56□□□□□ -1.36
NEK1-201ENST00000439128 TPRXLQ17RH7 258 aa6.56□□□□□ -1.36
NEK1-201ENST00000439128 DNAH14Q0VDD8 3507 aa6.56□□□□□ -1.36
NEK1-201ENST00000439128 PRAC1Q96KF2 57 aa6.55□□□□□ -1.36
NEK1-201ENST00000439128 KRTAP10-10P60014 251 aa6.54□□□□□ -1.36
NEK1-201ENST00000439128 USP34Q70CQ2 3546 aa6.54□□□□□ -1.36
NEK1-201ENST00000439128 CFAP47Q6ZTR5 3102 aa6.53□□□□□ -1.36
NEK1-201ENST00000439128 ADGRG4Q8IZF6 3080 aa6.52□□□□□ -1.37
NEK1-201ENST00000439128 FREM2Q5SZK8 3169 aa6.51□□□□□ -1.37
NEK1-201ENST00000439128 ZZEF1O43149 2961 aa6.5□□□□□ -1.37
NEK1-201ENST00000439128 KRTAP10-8P60410 259 aa6.5□□□□□ -1.37
NEK1-201ENST00000439128 DMXL1Q9Y485 3027 aa6.49□□□□□ -1.37
NEK1-201ENST00000439128 A8MU10 97 aa6.49□□□□□ -1.37
NEK1-201ENST00000439128 TENM2Q9NT68 2774 aa6.46□□□□□ -1.37
NEK1-201ENST00000439128 NIPBLQ6KC79 2804 aaeCLIP6.46□□□□□ -1.38
NEK1-201ENST00000439128 TNP1P09430 55 aa6.45□□□□□ -1.38
NEK1-201ENST00000439128 CELSR2Q9HCU4 2923 aa6.45□□□□□ -1.38
NEK1-201ENST00000439128 SPEGQ15772 3267 aa6.44□□□□□ -1.38
NEK1-201ENST00000439128 ASH1LQ9NR48 2969 aaKnown RBP6.42□□□□□ -1.38
NEK1-201ENST00000439128 DCHS2Q6V1P9 2916 aa6.41□□□□□ -1.38
NEK1-201ENST00000439128 KRTAP13-3Q3SY46 172 aa6.39□□□□□ -1.39
NEK1-201ENST00000439128 A0A0A0MQY5 61 aa6.37□□□□□ -1.39
NEK1-201ENST00000439128 TENM1Q9UKZ4 2725 aa6.35□□□□□ -1.39
NEK1-201ENST00000439128 NF1P21359 2839 aa6.34□□□□□ -1.4
NEK1-201ENST00000439128 PRO2289Q9P1D8 64 aa6.33□□□□□ -1.4
NEK1-201ENST00000439128 ZANQ9Y493 2812 aa6.31□□□□□ -1.4
NEK1-201ENST00000439128 TENM3Q9P273 2699 aa6.28□□□□□ -1.4
NEK1-201ENST00000439128 HRNRQ86YZ3 2850 aaPredicted RBP6.24□□□□□ -1.41
NEK1-201ENST00000439128 NBPF19A0A087WUL8 3843 aa6.19□□□□□ -1.42
NEK1-201ENST00000439128 C10orf95Q9H7T3 257 aa6.18□□□□□ -1.42
NEK1-201ENST00000439128 MXRA5Q9NR99 2828 aa6.17□□□□□ -1.42
NEK1-201ENST00000439128 KRTAP16-1A8MUX0 517 aa6.17□□□□□ -1.42
NEK1-201ENST00000439128 LOC400499M0QZD8 3231 aa6.16□□□□□ -1.42
NEK1-201ENST00000439128 PKD1L1Q8TDX9 2849 aa6.16□□□□□ -1.42
NEK1-201ENST00000439128 FBN2P35556 2912 aa6.14□□□□□ -1.43
NEK1-201ENST00000439128 CELSR1Q9NYQ6 3014 aa6.14□□□□□ -1.43
NEK1-201ENST00000439128 MYO15AQ9UKN7 3530 aa6.12□□□□□ -1.43
NEK1-201ENST00000439128 KRTAP25-1Q3LHN0 102 aa6.12□□□□□ -1.43
NEK1-201ENST00000439128 RELNP78509 3460 aa6.07□□□□□ -1.44
NEK1-201ENST00000439128 PDZD2O15018 2839 aa6.07□□□□□ -1.44
NEK1-201ENST00000439128 DCHS1Q96JQ0 3298 aa6.06□□□□□ -1.44
NEK1-201ENST00000439128 PP632Q6XCG6 107 aa6.04□□□□□ -1.44
NEK1-201ENST00000439128 P0C880 135 aa6.04□□□□□ -1.44
NEK1-201ENST00000439128 VWFP04275 2813 aa6.02□□□□□ -1.45
NEK1-201ENST00000439128 WDFY3Q8IZQ1 3526 aa6.02□□□□□ -1.45
NEK1-201ENST00000439128 ASPMQ8IZT6 3477 aa6□□□□□ -1.45
NEK1-201ENST00000439128 ZFHX3Q15911 3703 aa5.98□□□□□ -1.45
NEK1-201ENST00000439128 OTOGQ6ZRI0 2925 aa5.95□□□□□ -1.46
NEK1-201ENST00000439128 A6NN06 94 aa5.95□□□□□ -1.46
NEK1-201ENST00000439128 ANK3Q12955 4377 aaKnown RBP5.94□□□□□ -1.46
NEK1-201ENST00000439128 H0YAA0 97 aa5.92□□□□□ -1.46
NEK1-201ENST00000439128 KRTAP4-5Q9BYR2 181 aa5.91□□□□□ -1.46
NEK1-201ENST00000439128 H3BS24 57 aa5.9□□□□□ -1.47
NEK1-201ENST00000439128 LAMA5O15230 3695 aa5.88□□□□□ -1.47
NEK1-201ENST00000439128 TGP01266 2768 aa5.87□□□□□ -1.47
NEK1-201ENST00000439128 FBN1P35555 2871 aaKnown RBP5.86□□□□□ -1.47
NEK1-201ENST00000439128 MT1HL1P0DM35 61 aa5.84□□□□□ -1.47
NEK1-201ENST00000439128 NDUFAF8A1L188 74 aa5.83□□□□□ -1.48
NEK1-201ENST00000439128 ZFHX4Q86UP3 3567 aa5.74□□□□□ -1.49
NEK1-201ENST00000439128 KRTAP12-2P59991 146 aa5.71□□□□□ -1.49
NEK1-201ENST00000439128 DMDP11532 3685 aa5.71□□□□□ -1.5
NEK1-201ENST00000439128 FBN3Q75N90 2809 aa5.68□□□□□ -1.5
NEK1-201ENST00000439128 SRRM2Q9UQ35 2752 aaKnown RBP5.67□□□□□ -1.5
NEK1-201ENST00000439128 CSMD1Q96PZ7 3565 aa5.67□□□□□ -1.5
NEK1-201ENST00000439128 CSMD2Q7Z408 3487 aa5.65□□□□□ -1.5
NEK1-201ENST00000439128 KRTAP13-4Q3LI77 160 aa5.64□□□□□ -1.51
NEK1-201ENST00000439128 SMG1Q96Q15 3661 aaKnown RBP5.63□□□□□ -1.51
NEK1-201ENST00000439128 KRTAP3-1Q9BYR8 98 aa5.63□□□□□ -1.51
NEK1-201ENST00000439128 ALMS1Q8TCU4 4167 aa5.62□□□□□ -1.51
NEK1-201ENST00000439128 MUC3AQ02505 3323 aa5.6□□□□□ -1.51
NEK1-201ENST00000439128 HUWE1Q7Z6Z7 4374 aaKnown RBP5.6□□□□□ -1.51
NEK1-201ENST00000439128 KRTAP10-4P60372 401 aaPredicted RBP5.58□□□□□ -1.52
NEK1-201ENST00000439128 KRTAP12-1P59990 96 aa5.58□□□□□ -1.52
NEK1-201ENST00000439128 KRTAP15-1Q3LI76 137 aa5.57□□□□□ -1.52
NEK1-201ENST00000439128 TRRAPQ9Y4A5 3859 aa5.56□□□□□ -1.52
NEK1-201ENST00000439128 CRCT1Q9UGL9 99 aa5.52□□□□□ -1.53
NEK1-201ENST00000439128 SPENQ96T58 3664 aaKnown RBP5.45□□□□□ -1.54
NEK1-201ENST00000439128 COL7A1Q02388 2944 aa5.44□□□□□ -1.54
NEK1-201ENST00000439128 KRTAP10-12P60413 245 aa5.42□□□□□ -1.54
NEK1-201ENST00000439128 MEGF8Q7Z7M0 2845 aa5.41□□□□□ -1.54
NEK1-201ENST00000439128 SVEP1Q4LDE5 3571 aa5.38□□□□□ -1.55
NEK1-201ENST00000439128 KRTAP10-6P60371 365 aaPredicted RBP5.38□□□□□ -1.55
NEK1-201ENST00000439128 BSNQ9UPA5 3926 aa5.35□□□□□ -1.55
NEK1-201ENST00000439128 LORP23490 312 aaPredicted RBP5.35□□□□□ -1.55
NEK1-201ENST00000439128 DNAH9Q9NYC9 4486 aa5.32□□□□□ -1.56
NEK1-201ENST00000439128 KRTAP8-1Q8IUC2 63 aa5.27□□□□□ -1.57
NEK1-201ENST00000439128 KRTAP3-3Q9BYR6 98 aa5.26□□□□□ -1.57
NEK1-201ENST00000439128 CUBNO60494 3623 aa5.25□□□□□ -1.57
NEK1-201ENST00000439128 DNAH5Q8TE73 4624 aa5.21□□□□□ -1.57
NEK1-201ENST00000439128 DNAH1Q9P2D7 4330 aa5.2□□□□□ -1.58
NEK1-201ENST00000439128 KRTAP3-2Q9BYR7 98 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms