RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 ABCA2Q9BZC7 2435 aa3.26□□□□□ -1.89
MCF2-205ENST00000437564 TLN1Q9Y490 2541 aaKnown RBP3.25□□□□□ -1.89
MCF2-205ENST00000437564 F8P00451 2351 aa3.25□□□□□ -1.89
MCF2-205ENST00000437564 DEFB4AO15263 64 aa3.25□□□□□ -1.89
MCF2-205ENST00000437564 PP632Q6XCG6 107 aa3.25□□□□□ -1.89
MCF2-205ENST00000437564 SRRM2Q9UQ35 2752 aaKnown RBP3.24□□□□□ -1.89
MCF2-205ENST00000437564 KRTAP10-6P60371 365 aaPredicted RBP3.24□□□□□ -1.89
MCF2-205ENST00000437564 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.24□□□□□ -1.89
MCF2-205ENST00000437564 KRTAP10-8P60410 259 aa3.23□□□□□ -1.89
MCF2-205ENST00000437564 DEFB135Q30KP9 77 aa3.23□□□□□ -1.89
MCF2-205ENST00000437564 FAM208BQ5VWN6 2430 aa3.23□□□□□ -1.89
MCF2-205ENST00000437564 KRTAP13-4Q3LI77 160 aa3.23□□□□□ -1.89
MCF2-205ENST00000437564 TEX15Q9BXT5 2789 aa3.23□□□□□ -1.89
MCF2-205ENST00000437564 CEP290O15078 2479 aa3.23□□□□□ -1.89
MCF2-205ENST00000437564 NAV2Q8IVL1 2488 aa3.23□□□□□ -1.89
MCF2-205ENST00000437564 DCHS2Q6V1P9 2916 aa3.22□□□□□ -1.89
MCF2-205ENST00000437564 MUC6Q6W4X9 2439 aa3.21□□□□□ -1.89
MCF2-205ENST00000437564 FN1P02751 2386 aaKnown RBP3.21□□□□□ -1.9
MCF2-205ENST00000437564 NBPF19A0A087WUL8 3843 aa3.2□□□□□ -1.9
MCF2-205ENST00000437564 KRTAP12-1P59990 96 aa3.2□□□□□ -1.9
MCF2-205ENST00000437564 CCDC168Q8NDH2 2452 aa3.2□□□□□ -1.9
MCF2-205ENST00000437564 HIVEP3Q5T1R4 2406 aa3.19□□□□□ -1.9
MCF2-205ENST00000437564 SONP18583 2426 aaKnown RBP3.19□□□□□ -1.9
MCF2-205ENST00000437564 SPRR5A0A1B0GTR4 108 aa3.19□□□□□ -1.9
MCF2-205ENST00000437564 TLN2Q9Y4G6 2542 aa3.18□□□□□ -1.9
MCF2-205ENST00000437564 MYO15AQ9UKN7 3530 aa3.17□□□□□ -1.9
MCF2-205ENST00000437564 ADGRG4Q8IZF6 3080 aa3.16□□□□□ -1.9
MCF2-205ENST00000437564 MEGF8Q7Z7M0 2845 aa3.16□□□□□ -1.9
MCF2-205ENST00000437564 RELNP78509 3460 aa3.16□□□□□ -1.9
MCF2-205ENST00000437564 SETXQ7Z333 2677 aaKnown RBP3.16□□□□□ -1.9
MCF2-205ENST00000437564 USP9XQ93008 2570 aaPredicted RBP3.15□□□□□ -1.9
MCF2-205ENST00000437564 UTP20O75691 2785 aaKnown RBP3.14□□□□□ -1.91
MCF2-205ENST00000437564 HRNRQ86YZ3 2850 aaPredicted RBP3.13□□□□□ -1.91
MCF2-205ENST00000437564 KRTAP5-9P26371 169 aa3.13□□□□□ -1.91
MCF2-205ENST00000437564 BAHCC1Q9P281 2608 aa3.13□□□□□ -1.91
MCF2-205ENST00000437564 PTPN13Q12923 2485 aa3.13□□□□□ -1.91
MCF2-205ENST00000437564 JMJD1CQ15652 2540 aa3.12□□□□□ -1.91
MCF2-205ENST00000437564 M0QZ58 72 aa3.12□□□□□ -1.91
MCF2-205ENST00000437564 COL6A5A8TX70 2615 aa3.11□□□□□ -1.91
MCF2-205ENST00000437564 NIPBLQ6KC79 2804 aaeCLIP3.09□□□□□ -1.91
MCF2-205ENST00000437564 NBEAL2Q6ZNJ1 2754 aa3.08□□□□□ -1.92
MCF2-205ENST00000437564 ZFYVE26Q68DK2 2539 aa3.08□□□□□ -1.92
MCF2-205ENST00000437564 MTORP42345 2549 aa3.07□□□□□ -1.92
MCF2-205ENST00000437564 BSNQ9UPA5 3926 aa3.06□□□□□ -1.92
MCF2-205ENST00000437564 GCN1Q92616 2671 aaKnown RBP3.06□□□□□ -1.92
MCF2-205ENST00000437564 MUC3AQ02505 3323 aa3.05□□□□□ -1.92
MCF2-205ENST00000437564 HMCN1Q96RW7 5635 aa3.05□□□□□ -1.92
MCF2-205ENST00000437564 DMBT1Q9UGM3 2413 aaPredicted RBP3.04□□□□□ -1.92
MCF2-205ENST00000437564 Q5VSD8 79 aa3.04□□□□□ -1.92
MCF2-205ENST00000437564 PKD1L2Q7Z442 2459 aa3.04□□□□□ -1.92
MCF2-205ENST00000437564 SVEP1Q4LDE5 3571 aa3.04□□□□□ -1.92
MCF2-205ENST00000437564 CENPEQ02224 2701 aa3.03□□□□□ -1.92
MCF2-205ENST00000437564 EYSQ5T1H1 3165 aa3.03□□□□□ -1.92
MCF2-205ENST00000437564 HECTD1Q9ULT8 2610 aa3.03□□□□□ -1.93
MCF2-205ENST00000437564 SETD2Q9BYW2 2564 aaPredicted RBP3.02□□□□□ -1.93
MCF2-205ENST00000437564 DOPEY1Q5JWR5 2465 aa3.02□□□□□ -1.93
MCF2-205ENST00000437564 HELZ2Q9BYK8 2649 aaKnown RBP3.01□□□□□ -1.93
MCF2-205ENST00000437564 UNC79Q9P2D8 2635 aa3.01□□□□□ -1.93
MCF2-205ENST00000437564 VPS13DQ5THJ4 4388 aa3.01□□□□□ -1.93
MCF2-205ENST00000437564 CHD8Q9HCK8 2581 aa3□□□□□ -1.93
MCF2-205ENST00000437564 TTC28Q96AY4 2481 aa3□□□□□ -1.93
MCF2-205ENST00000437564 CFAP46Q8IYW2 2715 aa3□□□□□ -1.93
MCF2-205ENST00000437564 KRTAP10-9P60411 292 aa3□□□□□ -1.93
MCF2-205ENST00000437564 MYO9AB2RTY4 2548 aa2.99□□□□□ -1.93
MCF2-205ENST00000437564 FRAS1Q86XX4 4008 aa2.99□□□□□ -1.93
MCF2-205ENST00000437564 CSMD3Q7Z407 3707 aa2.99□□□□□ -1.93
MCF2-205ENST00000437564 MAPK1IP1LQ8NDC0 245 aa2.98□□□□□ -1.93
MCF2-205ENST00000437564 LRRK2Q5S007 2527 aa2.98□□□□□ -1.93
MCF2-205ENST00000437564 LCE1AQ5T7P2 110 aa2.98□□□□□ -1.93
MCF2-205ENST00000437564 KRTAP5-11Q6L8G4 156 aa2.98□□□□□ -1.93
MCF2-205ENST00000437564 NBEAL1Q6ZS30 2694 aa2.97□□□□□ -1.93
MCF2-205ENST00000437564 VPS13CQ709C8 3753 aa2.97□□□□□ -1.93
MCF2-205ENST00000437564 RPS29P62273 56 aaKnown RBP2.97□□□□□ -1.93
MCF2-205ENST00000437564 TGP01266 2768 aa2.97□□□□□ -1.93
MCF2-205ENST00000437564 TENM4Q6N022 2769 aa2.97□□□□□ -1.93
MCF2-205ENST00000437564 DNAH1Q9P2D7 4330 aa2.96□□□□□ -1.94
MCF2-205ENST00000437564 ITPR3Q14573 2671 aa2.96□□□□□ -1.94
MCF2-205ENST00000437564 TRRAPQ9Y4A5 3859 aa2.95□□□□□ -1.94
MCF2-205ENST00000437564 A0A1B0GVY2 172 aa2.94□□□□□ -1.94
MCF2-205ENST00000437564 KRTAP10-7P60409 375 aaPredicted RBP2.94□□□□□ -1.94
MCF2-205ENST00000437564 COL7A1Q02388 2944 aa2.94□□□□□ -1.94
MCF2-205ENST00000437564 PDZD2O15018 2839 aa2.94□□□□□ -1.94
MCF2-205ENST00000437564 USP9YO00507 2555 aaPredicted RBP2.93□□□□□ -1.94
MCF2-205ENST00000437564 ACANP16112 2415 aa2.93□□□□□ -1.94
MCF2-205ENST00000437564 MXRA5Q9NR99 2828 aa2.93□□□□□ -1.94
MCF2-205ENST00000437564 KRTAP13-2Q52LG2 175 aa2.93□□□□□ -1.94
MCF2-205ENST00000437564 KRTAP10-11P60412 298 aa2.92□□□□□ -1.94
MCF2-205ENST00000437564 CEP295Q9C0D2 2601 aa2.92□□□□□ -1.94
MCF2-205ENST00000437564 ABCA12Q86UK0 2595 aa2.92□□□□□ -1.94
MCF2-205ENST00000437564 EPG5Q9HCE0 2579 aa2.92□□□□□ -1.94
MCF2-205ENST00000437564 CSMD2Q7Z408 3487 aa2.92□□□□□ -1.94
MCF2-205ENST00000437564 KRTAP1-5Q9BYS1 174 aa2.9□□□□□ -1.95
MCF2-205ENST00000437564 ANKRD11Q6UB99 2663 aaPredicted RBP2.9□□□□□ -1.95
MCF2-205ENST00000437564 PIEZO1Q92508 2521 aa2.89□□□□□ -1.95
MCF2-205ENST00000437564 DNAH11Q96DT5 4516 aa2.89□□□□□ -1.95
MCF2-205ENST00000437564 HIVEP1P15822 2718 aa2.88□□□□□ -1.95
MCF2-205ENST00000437564 BDP1A6H8Y1 2624 aa2.88□□□□□ -1.95
MCF2-205ENST00000437564 ITPR2Q14571 2701 aa2.86□□□□□ -1.95
MCF2-205ENST00000437564 KRTAP10-3P60369 221 aa2.85□□□□□ -1.95
MCF2-205ENST00000437564 CACNA1AO00555 2505 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms