RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 NBEAL2Q6ZNJ1 2754 aa8.42□□□□□ -1.06
PTPRF-206ENST00000429895 BAHCC1Q9P281 2608 aa8.4□□□□□ -1.07
PTPRF-206ENST00000429895 KRTAP10-8P60410 259 aa8.38□□□□□ -1.07
PTPRF-206ENST00000429895 TNRC18O15417 2968 aaPredicted RBP8.35□□□□□ -1.07
PTPRF-206ENST00000429895 BOD1L1Q8NFC6 3051 aa8.35□□□□□ -1.07
PTPRF-206ENST00000429895 XP32Q5T750 250 aa8.25□□□□□ -1.09
PTPRF-206ENST00000429895 ADGRG4Q8IZF6 3080 aa8.25□□□□□ -1.09
PTPRF-206ENST00000429895 LRBAP50851 2863 aa8.24□□□□□ -1.09
PTPRF-206ENST00000429895 ITPR2Q14571 2701 aa8.24□□□□□ -1.09
PTPRF-206ENST00000429895 UBR5O95071 2799 aaPredicted RBP8.23□□□□□ -1.09
PTPRF-206ENST00000429895 KALRNO60229 2985 aa8.22□□□□□ -1.09
PTPRF-206ENST00000429895 KRTAP21-3Q3LHN1 58 aa8.21□□□□□ -1.09
PTPRF-206ENST00000429895 IGSF10Q6WRI0 2623 aa8.21□□□□□ -1.09
PTPRF-206ENST00000429895 WDFY3Q8IZQ1 3526 aa8.21□□□□□ -1.1
PTPRF-206ENST00000429895 KRTAP10-10P60014 251 aa8.17□□□□□ -1.1
PTPRF-206ENST00000429895 DMXL2Q8TDJ6 3036 aa8.16□□□□□ -1.1
PTPRF-206ENST00000429895 MAP1AP78559 2803 aaPredicted RBP8.16□□□□□ -1.1
PTPRF-206ENST00000429895 LOC400499M0QZD8 3231 aa8.15□□□□□ -1.1
PTPRF-206ENST00000429895 NSD1Q96L73 2696 aaPredicted RBP8.15□□□□□ -1.1
PTPRF-206ENST00000429895 ATMQ13315 3056 aa8.14□□□□□ -1.11
PTPRF-206ENST00000429895 KRTAP1-4P0C5Y4 121 aa8.14□□□□□ -1.11
PTPRF-206ENST00000429895 ZZEF1O43149 2961 aa8.11□□□□□ -1.11
PTPRF-206ENST00000429895 DMXL1Q9Y485 3027 aa8.11□□□□□ -1.11
PTPRF-206ENST00000429895 PP632Q6XCG6 107 aa8.09□□□□□ -1.12
PTPRF-206ENST00000429895 TACC2O95359 2948 aa8.07□□□□□ -1.12
PTPRF-206ENST00000429895 CRYBG3Q68DQ2 2970 aa8.07□□□□□ -1.12
PTPRF-206ENST00000429895 ZFHX4Q86UP3 3567 aa8.05□□□□□ -1.12
PTPRF-206ENST00000429895 ITPR1Q14643 2758 aa8.03□□□□□ -1.12
PTPRF-206ENST00000429895 TPRXLQ17RH7 258 aa8.02□□□□□ -1.12
PTPRF-206ENST00000429895 DMDP11532 3685 aa8.02□□□□□ -1.13
PTPRF-206ENST00000429895 APCP25054 2843 aa8.01□□□□□ -1.13
PTPRF-206ENST00000429895 H0YAA0 97 aa8□□□□□ -1.13
PTPRF-206ENST00000429895 PRO2289Q9P1D8 64 aa7.99□□□□□ -1.13
PTPRF-206ENST00000429895 COL12A1Q99715 3063 aa7.99□□□□□ -1.13
PTPRF-206ENST00000429895 CFAP47Q6ZTR5 3102 aa7.99□□□□□ -1.13
PTPRF-206ENST00000429895 KMT2BQ9UMN6 2715 aaPredicted RBP7.98□□□□□ -1.13
PTPRF-206ENST00000429895 HRNRQ86YZ3 2850 aaPredicted RBP7.97□□□□□ -1.13
PTPRF-206ENST00000429895 UTP20O75691 2785 aaKnown RBP7.97□□□□□ -1.13
PTPRF-206ENST00000429895 HIVEP1P15822 2718 aa7.97□□□□□ -1.13
PTPRF-206ENST00000429895 ASPMQ8IZT6 3477 aa7.96□□□□□ -1.14
PTPRF-206ENST00000429895 P0C880 135 aa7.92□□□□□ -1.14
PTPRF-206ENST00000429895 FLNCQ14315 2725 aa7.91□□□□□ -1.14
PTPRF-206ENST00000429895 KRTAP13-3Q3SY46 172 aa7.89□□□□□ -1.15
PTPRF-206ENST00000429895 DCHS1Q96JQ0 3298 aa7.89□□□□□ -1.15
PTPRF-206ENST00000429895 ASH1LQ9NR48 2969 aaKnown RBP7.89□□□□□ -1.15
PTPRF-206ENST00000429895 SMG1Q96Q15 3661 aaKnown RBP7.86□□□□□ -1.15
PTPRF-206ENST00000429895 LAMA5O15230 3695 aa7.85□□□□□ -1.15
PTPRF-206ENST00000429895 TENM4Q6N022 2769 aa7.84□□□□□ -1.15
PTPRF-206ENST00000429895 CSMD1Q96PZ7 3565 aa7.82□□□□□ -1.16
PTPRF-206ENST00000429895 RELNP78509 3460 aa7.81□□□□□ -1.16
PTPRF-206ENST00000429895 MUC3AQ02505 3323 aa7.75□□□□□ -1.17
PTPRF-206ENST00000429895 ZANQ9Y493 2812 aa7.72□□□□□ -1.17
PTPRF-206ENST00000429895 CELSR2Q9HCU4 2923 aa7.67□□□□□ -1.18
PTPRF-206ENST00000429895 KRTAP12-2P59991 146 aa7.62□□□□□ -1.19
PTPRF-206ENST00000429895 DCHS2Q6V1P9 2916 aa7.62□□□□□ -1.19
PTPRF-206ENST00000429895 SVEP1Q4LDE5 3571 aa7.61□□□□□ -1.19
PTPRF-206ENST00000429895 FBN2P35556 2912 aa7.56□□□□□ -1.2
PTPRF-206ENST00000429895 NIPBLQ6KC79 2804 aaeCLIP7.55□□□□□ -1.2
PTPRF-206ENST00000429895 TENM2Q9NT68 2774 aa7.54□□□□□ -1.2
PTPRF-206ENST00000429895 BSNQ9UPA5 3926 aa7.54□□□□□ -1.2
PTPRF-206ENST00000429895 TENM1Q9UKZ4 2725 aa7.52□□□□□ -1.21
PTPRF-206ENST00000429895 SPENQ96T58 3664 aaKnown RBP7.48□□□□□ -1.21
PTPRF-206ENST00000429895 MXRA5Q9NR99 2828 aa7.47□□□□□ -1.21
PTPRF-206ENST00000429895 KRTAP13-4Q3LI77 160 aa7.46□□□□□ -1.22
PTPRF-206ENST00000429895 NF1P21359 2839 aa7.45□□□□□ -1.22
PTPRF-206ENST00000429895 CELSR1Q9NYQ6 3014 aa7.41□□□□□ -1.22
PTPRF-206ENST00000429895 KRTAP12-1P59990 96 aa7.39□□□□□ -1.23
PTPRF-206ENST00000429895 TENM3Q9P273 2699 aa7.39□□□□□ -1.23
PTPRF-206ENST00000429895 TGP01266 2768 aa7.38□□□□□ -1.23
PTPRF-206ENST00000429895 KRTAP15-1Q3LI76 137 aa7.37□□□□□ -1.23
PTPRF-206ENST00000429895 NBPF19A0A087WUL8 3843 aa7.29□□□□□ -1.24
PTPRF-206ENST00000429895 ANK3Q12955 4377 aaKnown RBP7.27□□□□□ -1.25
PTPRF-206ENST00000429895 KRTAP3-1Q9BYR8 98 aa7.26□□□□□ -1.25
PTPRF-206ENST00000429895 PDZD2O15018 2839 aa7.25□□□□□ -1.25
PTPRF-206ENST00000429895 CUBNO60494 3623 aa7.21□□□□□ -1.25
PTPRF-206ENST00000429895 CRCT1Q9UGL9 99 aa7.2□□□□□ -1.26
PTPRF-206ENST00000429895 PKD1L1Q8TDX9 2849 aa7.18□□□□□ -1.26
PTPRF-206ENST00000429895 CSMD2Q7Z408 3487 aa7.17□□□□□ -1.26
PTPRF-206ENST00000429895 VWFP04275 2813 aa7.13□□□□□ -1.27
PTPRF-206ENST00000429895 ZFHX3Q15911 3703 aa7.12□□□□□ -1.27
PTPRF-206ENST00000429895 VPS13CQ709C8 3753 aa7.1□□□□□ -1.27
PTPRF-206ENST00000429895 KRTAP10-6P60371 365 aaPredicted RBP7.04□□□□□ -1.28
PTPRF-206ENST00000429895 OTOGQ6ZRI0 2925 aa6.99□□□□□ -1.29
PTPRF-206ENST00000429895 KRTAP10-12P60413 245 aa6.96□□□□□ -1.3
PTPRF-206ENST00000429895 TRRAPQ9Y4A5 3859 aa6.93□□□□□ -1.3
PTPRF-206ENST00000429895 MT1HL1P0DM35 61 aa6.92□□□□□ -1.3
PTPRF-206ENST00000429895 AKAP9Q99996 3911 aa6.9□□□□□ -1.3
PTPRF-206ENST00000429895 KRTAP4-5Q9BYR2 181 aa6.85□□□□□ -1.31
PTPRF-206ENST00000429895 ZNF469Q96JG9 3925 aaPredicted RBP6.83□□□□□ -1.32
PTPRF-206ENST00000429895 FBN1P35555 2871 aaKnown RBP6.82□□□□□ -1.32
PTPRF-206ENST00000429895 HUWE1Q7Z6Z7 4374 aaKnown RBP6.78□□□□□ -1.32
PTPRF-206ENST00000429895 KRTAP3-3Q9BYR6 98 aa6.75□□□□□ -1.33
PTPRF-206ENST00000429895 KRTAP3-2Q9BYR7 98 aa6.75□□□□□ -1.33
PTPRF-206ENST00000429895 INE1O15225 51 aa6.73□□□□□ -1.33
PTPRF-206ENST00000429895 KRTAP12-3P60328 96 aa6.72□□□□□ -1.33
PTPRF-206ENST00000429895 SRRM2Q9UQ35 2752 aaKnown RBP6.69□□□□□ -1.34
PTPRF-206ENST00000429895 LCE3AQ5TA76 89 aa6.68□□□□□ -1.34
PTPRF-206ENST00000429895 FBN3Q75N90 2809 aa6.65□□□□□ -1.35
PTPRF-206ENST00000429895 MEGF8Q7Z7M0 2845 aa6.63□□□□□ -1.35
PTPRF-206ENST00000429895 KRTAP10-4P60372 401 aaPredicted RBP6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 156.7 ms