RNA–Protein interactions for RNA: ENST00000409402.8

SPIRE1-202, Transcript of spire type actin nucleation factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPIRE1, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIRE1-202ENST00000409402 LRBAP50851 2863 aa13.52□□□□□ -0.24
SPIRE1-202ENST00000409402 CRYBG3Q68DQ2 2970 aa13.5□□□□□ -0.25
SPIRE1-202ENST00000409402 TNP1P09430 55 aa13.49□□□□□ -0.25
SPIRE1-202ENST00000409402 SZT2Q5T011 3432 aa13.48□□□□□ -0.25
SPIRE1-202ENST00000409402 NIPBLQ6KC79 2804 aaeCLIP13.45□□□□□ -0.26
SPIRE1-202ENST00000409402 DMXL2Q8TDJ6 3036 aa13.43□□□□□ -0.26
SPIRE1-202ENST00000409402 KRTAP25-1Q3LHN0 102 aa13.43□□□□□ -0.26
SPIRE1-202ENST00000409402 EYSQ5T1H1 3165 aa13.4□□□□□ -0.26
SPIRE1-202ENST00000409402 TPRXLQ17RH7 258 aa13.39□□□□□ -0.27
SPIRE1-202ENST00000409402 H3BS24 57 aa13.37□□□□□ -0.27
SPIRE1-202ENST00000409402 ADGRG4Q8IZF6 3080 aa13.35□□□□□ -0.27
SPIRE1-202ENST00000409402 LAMA1P25391 3075 aa13.34□□□□□ -0.27
SPIRE1-202ENST00000409402 A6NN06 94 aa13.33□□□□□ -0.28
SPIRE1-202ENST00000409402 BOD1L1Q8NFC6 3051 aa13.31□□□□□ -0.28
SPIRE1-202ENST00000409402 FREM2Q5SZK8 3169 aa13.31□□□□□ -0.28
SPIRE1-202ENST00000409402 A0A1B0GVY2 172 aa13.3□□□□□ -0.28
SPIRE1-202ENST00000409402 VCANP13611 3396 aa13.27□□□□□ -0.29
SPIRE1-202ENST00000409402 COL6A3P12111 3177 aa13.26□□□□□ -0.29
SPIRE1-202ENST00000409402 ASH1LQ9NR48 2969 aaKnown RBP13.25□□□□□ -0.29
SPIRE1-202ENST00000409402 ZZEF1O43149 2961 aa13.23□□□□□ -0.29
SPIRE1-202ENST00000409402 NBEAQ8NFP9 2946 aa13.22□□□□□ -0.29
SPIRE1-202ENST00000409402 CELSR2Q9HCU4 2923 aa13.22□□□□□ -0.29
SPIRE1-202ENST00000409402 KRTAP10-8P60410 259 aa13.21□□□□□ -0.29
SPIRE1-202ENST00000409402 TNRC18O15417 2968 aaPredicted RBP13.18□□□□□ -0.3
SPIRE1-202ENST00000409402 DCHS2Q6V1P9 2916 aa13.11□□□□□ -0.31
SPIRE1-202ENST00000409402 KRTAP13-3Q3SY46 172 aa13.1□□□□□ -0.31
SPIRE1-202ENST00000409402 KRTAP10-10P60014 251 aa13.1□□□□□ -0.31
SPIRE1-202ENST00000409402 DNAH14Q0VDD8 3507 aa13.07□□□□□ -0.32
SPIRE1-202ENST00000409402 KRTAP16-1A8MUX0 517 aa13.04□□□□□ -0.32
SPIRE1-202ENST00000409402 C10orf95Q9H7T3 257 aa13.01□□□□□ -0.33
SPIRE1-202ENST00000409402 PP632Q6XCG6 107 aa13□□□□□ -0.33
SPIRE1-202ENST00000409402 CFAP47Q6ZTR5 3102 aa13□□□□□ -0.33
SPIRE1-202ENST00000409402 ZANQ9Y493 2812 aa12.98□□□□□ -0.33
SPIRE1-202ENST00000409402 USP34Q70CQ2 3546 aa12.93□□□□□ -0.34
SPIRE1-202ENST00000409402 PRO2289Q9P1D8 64 aa12.92□□□□□ -0.34
SPIRE1-202ENST00000409402 HRNRQ86YZ3 2850 aaPredicted RBP12.87□□□□□ -0.35
SPIRE1-202ENST00000409402 TENM2Q9NT68 2774 aa12.87□□□□□ -0.35
SPIRE1-202ENST00000409402 TENM1Q9UKZ4 2725 aa12.86□□□□□ -0.35
SPIRE1-202ENST00000409402 NF1P21359 2839 aa12.86□□□□□ -0.35
SPIRE1-202ENST00000409402 DMXL1Q9Y485 3027 aa12.85□□□□□ -0.35
SPIRE1-202ENST00000409402 SPTBN5Q9NRC6 3674 aaKnown RBP12.83□□□□□ -0.36
SPIRE1-202ENST00000409402 NDUFAF8A1L188 74 aa12.8□□□□□ -0.36
SPIRE1-202ENST00000409402 TENM3Q9P273 2699 aa12.77□□□□□ -0.37
SPIRE1-202ENST00000409402 H0YAA0 97 aa12.76□□□□□ -0.37
SPIRE1-202ENST00000409402 SPEGQ15772 3267 aa12.68□□□□□ -0.38
SPIRE1-202ENST00000409402 P0C880 135 aa12.66□□□□□ -0.38
SPIRE1-202ENST00000409402 FBN2P35556 2912 aa12.62□□□□□ -0.39
SPIRE1-202ENST00000409402 MXRA5Q9NR99 2828 aa12.54□□□□□ -0.4
SPIRE1-202ENST00000409402 CELSR1Q9NYQ6 3014 aa12.5□□□□□ -0.41
SPIRE1-202ENST00000409402 LOC400499M0QZD8 3231 aa12.36□□□□□ -0.43
SPIRE1-202ENST00000409402 PKD1L1Q8TDX9 2849 aa12.31□□□□□ -0.44
SPIRE1-202ENST00000409402 TGP01266 2768 aa12.3□□□□□ -0.44
SPIRE1-202ENST00000409402 PDZD2O15018 2839 aa12.22□□□□□ -0.45
SPIRE1-202ENST00000409402 KRTAP12-2P59991 146 aa12.11□□□□□ -0.47
SPIRE1-202ENST00000409402 VWFP04275 2813 aa12.1□□□□□ -0.47
SPIRE1-202ENST00000409402 MYO15AQ9UKN7 3530 aa12.04□□□□□ -0.48
SPIRE1-202ENST00000409402 KRTAP13-4Q3LI77 160 aa12.01□□□□□ -0.49
SPIRE1-202ENST00000409402 DCHS1Q96JQ0 3298 aa11.98□□□□□ -0.49
SPIRE1-202ENST00000409402 RELNP78509 3460 aa11.98□□□□□ -0.49
SPIRE1-202ENST00000409402 WDFY3Q8IZQ1 3526 aa11.96□□□□□ -0.5
SPIRE1-202ENST00000409402 NBPF19A0A087WUL8 3843 aa11.93□□□□□ -0.5
SPIRE1-202ENST00000409402 KRTAP3-1Q9BYR8 98 aa11.92□□□□□ -0.5
SPIRE1-202ENST00000409402 KRTAP12-1P59990 96 aa11.91□□□□□ -0.5
SPIRE1-202ENST00000409402 OTOGQ6ZRI0 2925 aa11.89□□□□□ -0.51
SPIRE1-202ENST00000409402 MT1HL1P0DM35 61 aa11.78□□□□□ -0.52
SPIRE1-202ENST00000409402 ANK3Q12955 4377 aaKnown RBP11.73□□□□□ -0.53
SPIRE1-202ENST00000409402 ASPMQ8IZT6 3477 aa11.67□□□□□ -0.54
SPIRE1-202ENST00000409402 FBN1P35555 2871 aaKnown RBP11.67□□□□□ -0.54
SPIRE1-202ENST00000409402 KRTAP15-1Q3LI76 137 aa11.59□□□□□ -0.55
SPIRE1-202ENST00000409402 ZFHX3Q15911 3703 aa11.56□□□□□ -0.56
SPIRE1-202ENST00000409402 KRTAP10-6P60371 365 aaPredicted RBP11.53□□□□□ -0.56
SPIRE1-202ENST00000409402 LAMA5O15230 3695 aa11.49□□□□□ -0.57
SPIRE1-202ENST00000409402 KRTAP4-5Q9BYR2 181 aa11.47□□□□□ -0.57
SPIRE1-202ENST00000409402 SRRM2Q9UQ35 2752 aaKnown RBP11.45□□□□□ -0.58
SPIRE1-202ENST00000409402 FBN3Q75N90 2809 aa11.4□□□□□ -0.58
SPIRE1-202ENST00000409402 KRTAP10-4P60372 401 aaPredicted RBP11.39□□□□□ -0.59
SPIRE1-202ENST00000409402 ZFHX4Q86UP3 3567 aa11.38□□□□□ -0.59
SPIRE1-202ENST00000409402 MEGF8Q7Z7M0 2845 aa11.25□□□□□ -0.61
SPIRE1-202ENST00000409402 KRTAP10-12P60413 245 aa11.2□□□□□ -0.62
SPIRE1-202ENST00000409402 KRTAP3-3Q9BYR6 98 aa11.17□□□□□ -0.62
SPIRE1-202ENST00000409402 HUWE1Q7Z6Z7 4374 aaKnown RBP11.13□□□□□ -0.63
SPIRE1-202ENST00000409402 CSMD1Q96PZ7 3565 aa11.12□□□□□ -0.63
SPIRE1-202ENST00000409402 KRTAP3-2Q9BYR7 98 aa11.12□□□□□ -0.63
SPIRE1-202ENST00000409402 ALMS1Q8TCU4 4167 aa11.11□□□□□ -0.63
SPIRE1-202ENST00000409402 COL7A1Q02388 2944 aa11.1□□□□□ -0.63
SPIRE1-202ENST00000409402 TRRAPQ9Y4A5 3859 aa11.08□□□□□ -0.64
SPIRE1-202ENST00000409402 DMDP11532 3685 aa11.06□□□□□ -0.64
SPIRE1-202ENST00000409402 CSMD2Q7Z408 3487 aa11.02□□□□□ -0.65
SPIRE1-202ENST00000409402 CRCT1Q9UGL9 99 aa10.97□□□□□ -0.65
SPIRE1-202ENST00000409402 SMG1Q96Q15 3661 aaKnown RBP10.97□□□□□ -0.65
SPIRE1-202ENST00000409402 MUC3AQ02505 3323 aa10.81□□□□□ -0.68
SPIRE1-202ENST00000409402 KRTAP12-3P60328 96 aa10.8□□□□□ -0.68
SPIRE1-202ENST00000409402 SPENQ96T58 3664 aaKnown RBP10.74□□□□□ -0.69
SPIRE1-202ENST00000409402 SVEP1Q4LDE5 3571 aa10.74□□□□□ -0.69
SPIRE1-202ENST00000409402 LCE3AQ5TA76 89 aa10.64□□□□□ -0.71
SPIRE1-202ENST00000409402 KRTAP23-1A1A580 65 aa10.64□□□□□ -0.71
SPIRE1-202ENST00000409402 CUBNO60494 3623 aa10.62□□□□□ -0.71
SPIRE1-202ENST00000409402 LORP23490 312 aaPredicted RBP10.59□□□□□ -0.71
SPIRE1-202ENST00000409402 BSNQ9UPA5 3926 aa10.55□□□□□ -0.72
SPIRE1-202ENST00000409402 INE1O15225 51 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms