RNA–Protein interactions for RNA: ENST00000399655.5

CACNA1C-220, Transcript of calcium voltage-gated channel subunit alpha1 C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CACNA1C, Length 13,433 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1C-220ENST00000399655 PCNTO95613 3336 aa4.51□□□□□ -1.69
CACNA1C-220ENST00000399655 KRTAP23-1A1A580 65 aa4.51□□□□□ -1.69
CACNA1C-220ENST00000399655 UTRNP46939 3433 aa4.5□□□□□ -1.69
CACNA1C-220ENST00000399655 KRTAP13-4Q3LI77 160 aa4.49□□□□□ -1.69
CACNA1C-220ENST00000399655 NBEAQ8NFP9 2946 aa4.48□□□□□ -1.69
CACNA1C-220ENST00000399655 COL12A1Q99715 3063 aa4.48□□□□□ -1.69
CACNA1C-220ENST00000399655 VWFP04275 2813 aa4.47□□□□□ -1.69
CACNA1C-220ENST00000399655 ZANQ9Y493 2812 aa4.46□□□□□ -1.69
CACNA1C-220ENST00000399655 TENM4Q6N022 2769 aa4.46□□□□□ -1.7
CACNA1C-220ENST00000399655 TACC2O95359 2948 aa4.45□□□□□ -1.7
CACNA1C-220ENST00000399655 DCHS2Q6V1P9 2916 aa4.45□□□□□ -1.7
CACNA1C-220ENST00000399655 TPRXLQ17RH7 258 aa4.44□□□□□ -1.7
CACNA1C-220ENST00000399655 C5orf42Q9H799 3197 aa4.44□□□□□ -1.7
CACNA1C-220ENST00000399655 KRTAP15-1Q3LI76 137 aa4.44□□□□□ -1.7
CACNA1C-220ENST00000399655 DMXL2Q8TDJ6 3036 aa4.44□□□□□ -1.7
CACNA1C-220ENST00000399655 KRTAP1-1Q07627 177 aa4.43□□□□□ -1.7
CACNA1C-220ENST00000399655 KRTAP1-3Q8IUG1 177 aa4.43□□□□□ -1.7
CACNA1C-220ENST00000399655 KRTAP13-1Q8IUC0 172 aa4.41□□□□□ -1.7
CACNA1C-220ENST00000399655 MGAQ8IWI9 3026 aa4.4□□□□□ -1.7
CACNA1C-220ENST00000399655 XP32Q5T750 250 aa4.4□□□□□ -1.71
CACNA1C-220ENST00000399655 PKD1L1Q8TDX9 2849 aa4.38□□□□□ -1.71
CACNA1C-220ENST00000399655 PRUNE2Q8WUY3 3088 aa4.37□□□□□ -1.71
CACNA1C-220ENST00000399655 COL7A1Q02388 2944 aa4.35□□□□□ -1.71
CACNA1C-220ENST00000399655 A0A1B0GVY2 172 aa4.34□□□□□ -1.71
CACNA1C-220ENST00000399655 MEGF8Q7Z7M0 2845 aa4.34□□□□□ -1.72
CACNA1C-220ENST00000399655 LAMA1P25391 3075 aa4.32□□□□□ -1.72
CACNA1C-220ENST00000399655 CELSR1Q9NYQ6 3014 aa4.32□□□□□ -1.72
CACNA1C-220ENST00000399655 MXRA5Q9NR99 2828 aa4.3□□□□□ -1.72
CACNA1C-220ENST00000399655 ATMQ13315 3056 aa4.28□□□□□ -1.72
CACNA1C-220ENST00000399655 OTOGQ6ZRI0 2925 aa4.28□□□□□ -1.72
CACNA1C-220ENST00000399655 DMXL1Q9Y485 3027 aa4.25□□□□□ -1.73
CACNA1C-220ENST00000399655 HTTP42858 3142 aa4.25□□□□□ -1.73
CACNA1C-220ENST00000399655 WDFY4Q6ZS81 3184 aa4.24□□□□□ -1.73
CACNA1C-220ENST00000399655 ZZEF1O43149 2961 aa4.23□□□□□ -1.73
CACNA1C-220ENST00000399655 ADGRG4Q8IZF6 3080 aa4.22□□□□□ -1.73
CACNA1C-220ENST00000399655 HRNRQ86YZ3 2850 aaPredicted RBP4.2□□□□□ -1.74
CACNA1C-220ENST00000399655 BRCA2P51587 3418 aa4.19□□□□□ -1.74
CACNA1C-220ENST00000399655 VPS13AQ96RL7 3174 aa4.19□□□□□ -1.74
CACNA1C-220ENST00000399655 MKI67P46013 3256 aaKnown RBP4.18□□□□□ -1.74
CACNA1C-220ENST00000399655 KRTAP10-6P60371 365 aaPredicted RBP4.18□□□□□ -1.74
CACNA1C-220ENST00000399655 KRTAP12-1P59990 96 aa4.16□□□□□ -1.74
CACNA1C-220ENST00000399655 FREM2Q5SZK8 3169 aa4.14□□□□□ -1.75
CACNA1C-220ENST00000399655 KRTAP13-3Q3SY46 172 aa4.14□□□□□ -1.75
CACNA1C-220ENST00000399655 KRTAP7-1Q8IUC3 87 aa4.14□□□□□ -1.75
CACNA1C-220ENST00000399655 REV3LO60673 3130 aa4.12□□□□□ -1.75
CACNA1C-220ENST00000399655 BOD1L1Q8NFC6 3051 aa4.09□□□□□ -1.76
CACNA1C-220ENST00000399655 KRTAP1-4P0C5Y4 121 aa4.07□□□□□ -1.76
CACNA1C-220ENST00000399655 RANBP2P49792 3224 aaKnown RBP4.06□□□□□ -1.76
CACNA1C-220ENST00000399655 LAMA3Q16787 3333 aa4.05□□□□□ -1.76
CACNA1C-220ENST00000399655 KRTAP10-12P60413 245 aa4.05□□□□□ -1.76
CACNA1C-220ENST00000399655 ZFHX3Q15911 3703 aa4.03□□□□□ -1.76
CACNA1C-220ENST00000399655 FBN2P35556 2912 aa4.02□□□□□ -1.77
CACNA1C-220ENST00000399655 KRTAP21-3Q3LHN1 58 aa4.01□□□□□ -1.77
CACNA1C-220ENST00000399655 FBN3Q75N90 2809 aa4□□□□□ -1.77
CACNA1C-220ENST00000399655 XIRP2A4UGR9 3374 aa3.99□□□□□ -1.77
CACNA1C-220ENST00000399655 CRCT1Q9UGL9 99 aa3.98□□□□□ -1.77
CACNA1C-220ENST00000399655 CDH23Q9H251 3354 aa3.97□□□□□ -1.77
CACNA1C-220ENST00000399655 UNC80Q8N2C7 3258 aa3.97□□□□□ -1.77
CACNA1C-220ENST00000399655 SZT2Q5T011 3432 aa3.94□□□□□ -1.78
CACNA1C-220ENST00000399655 CELSR3Q9NYQ7 3312 aa3.93□□□□□ -1.78
CACNA1C-220ENST00000399655 COL6A3P12111 3177 aa3.91□□□□□ -1.78
CACNA1C-220ENST00000399655 KRTAP12-3P60328 96 aa3.9□□□□□ -1.78
CACNA1C-220ENST00000399655 KRTAP10-5P60370 271 aa3.9□□□□□ -1.78
CACNA1C-220ENST00000399655 KRTAP10-7P60409 375 aaPredicted RBP3.89□□□□□ -1.79
CACNA1C-220ENST00000399655 VCANP13611 3396 aa3.86□□□□□ -1.79
CACNA1C-220ENST00000399655 EYSQ5T1H1 3165 aa3.85□□□□□ -1.79
CACNA1C-220ENST00000399655 MT3P25713 68 aa3.85□□□□□ -1.79
CACNA1C-220ENST00000399655 DNAH14Q0VDD8 3507 aa3.82□□□□□ -1.8
CACNA1C-220ENST00000399655 FBN1P35555 2871 aaKnown RBP3.8□□□□□ -1.8
CACNA1C-220ENST00000399655 CFAP47Q6ZTR5 3102 aa3.8□□□□□ -1.8
CACNA1C-220ENST00000399655 NBPF19A0A087WUL8 3843 aa3.78□□□□□ -1.8
CACNA1C-220ENST00000399655 SPTBN5Q9NRC6 3674 aaKnown RBP3.77□□□□□ -1.81
CACNA1C-220ENST00000399655 ZFHX4Q86UP3 3567 aa3.75□□□□□ -1.81
CACNA1C-220ENST00000399655 USP34Q70CQ2 3546 aa3.75□□□□□ -1.81
CACNA1C-220ENST00000399655 KRTAP19-4Q3LI73 84 aa3.74□□□□□ -1.81
CACNA1C-220ENST00000399655 SPEGQ15772 3267 aa3.71□□□□□ -1.82
CACNA1C-220ENST00000399655 BSNQ9UPA5 3926 aa3.7□□□□□ -1.82
CACNA1C-220ENST00000399655 MYO15AQ9UKN7 3530 aa3.68□□□□□ -1.82
CACNA1C-220ENST00000399655 AKAP9Q99996 3911 aa3.66□□□□□ -1.82
CACNA1C-220ENST00000399655 KRTAP8-1Q8IUC2 63 aa3.63□□□□□ -1.83
CACNA1C-220ENST00000399655 KRTAP3-1Q9BYR8 98 aa3.63□□□□□ -1.83
CACNA1C-220ENST00000399655 MUC3AQ02505 3323 aa3.61□□□□□ -1.83
CACNA1C-220ENST00000399655 ALMS1Q8TCU4 4167 aa3.61□□□□□ -1.83
CACNA1C-220ENST00000399655 LCE3AQ5TA76 89 aa3.61□□□□□ -1.83
CACNA1C-220ENST00000399655 WDFY3Q8IZQ1 3526 aa3.59□□□□□ -1.83
CACNA1C-220ENST00000399655 LOC400499M0QZD8 3231 aa3.58□□□□□ -1.84
CACNA1C-220ENST00000399655 LAMA5O15230 3695 aa3.55□□□□□ -1.84
CACNA1C-220ENST00000399655 DNAH3Q8TD57 4116 aa3.54□□□□□ -1.84
CACNA1C-220ENST00000399655 KRTAP10-4P60372 401 aaPredicted RBP3.53□□□□□ -1.84
CACNA1C-220ENST00000399655 TRRAPQ9Y4A5 3859 aa3.52□□□□□ -1.85
CACNA1C-220ENST00000399655 DMDP11532 3685 aa3.5□□□□□ -1.85
CACNA1C-220ENST00000399655 CMYA5Q8N3K9 4069 aa3.49□□□□□ -1.85
CACNA1C-220ENST00000399655 KRTAP3-2Q9BYR7 98 aa3.48□□□□□ -1.85
CACNA1C-220ENST00000399655 SMG1Q96Q15 3661 aaKnown RBP3.47□□□□□ -1.85
CACNA1C-220ENST00000399655 ASPMQ8IZT6 3477 aa3.45□□□□□ -1.86
CACNA1C-220ENST00000399655 VPS13CQ709C8 3753 aa3.43□□□□□ -1.86
CACNA1C-220ENST00000399655 SPENQ96T58 3664 aaKnown RBP3.43□□□□□ -1.86
CACNA1C-220ENST00000399655 DCHS1Q96JQ0 3298 aa3.4□□□□□ -1.87
CACNA1C-220ENST00000399655 KRTAP3-3Q9BYR6 98 aa3.4□□□□□ -1.87
CACNA1C-220ENST00000399655 DNAH7Q8WXX0 4024 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms