RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 CRYBG3Q68DQ2 2970 aa6.3□□□□□ -1.4
VPS13A-205ENST00000376636 PRUNE2Q8WUY3 3088 aa6.29□□□□□ -1.4
VPS13A-205ENST00000376636 NF1P21359 2839 aa6.29□□□□□ -1.4
VPS13A-205ENST00000376636 CHD9Q3L8U1 2897 aa6.29□□□□□ -1.4
VPS13A-205ENST00000376636 COL12A1Q99715 3063 aa6.29□□□□□ -1.4
VPS13A-205ENST00000376636 RANBP2P49792 3224 aaKnown RBP6.28□□□□□ -1.4
VPS13A-205ENST00000376636 H0YAA0 97 aa6.28□□□□□ -1.4
VPS13A-205ENST00000376636 BRCA2P51587 3418 aa6.28□□□□□ -1.4
VPS13A-205ENST00000376636 LAMA3Q16787 3333 aa6.27□□□□□ -1.41
VPS13A-205ENST00000376636 TGP01266 2768 aa6.27□□□□□ -1.41
VPS13A-205ENST00000376636 FLNCQ14315 2725 aa6.26□□□□□ -1.41
VPS13A-205ENST00000376636 DMXL2Q8TDJ6 3036 aa6.25□□□□□ -1.41
VPS13A-205ENST00000376636 KRTAP21-3Q3LHN1 58 aa6.22□□□□□ -1.41
VPS13A-205ENST00000376636 DNAH14Q0VDD8 3507 aa6.19□□□□□ -1.42
VPS13A-205ENST00000376636 CELSR2Q9HCU4 2923 aa6.19□□□□□ -1.42
VPS13A-205ENST00000376636 NIPBLQ6KC79 2804 aaeCLIP6.17□□□□□ -1.42
VPS13A-205ENST00000376636 KRTAP7-1Q8IUC3 87 aa6.17□□□□□ -1.42
VPS13A-205ENST00000376636 LAMA1P25391 3075 aa6.17□□□□□ -1.42
VPS13A-205ENST00000376636 CDH23Q9H251 3354 aa6.16□□□□□ -1.42
VPS13A-205ENST00000376636 TACC2O95359 2948 aa6.15□□□□□ -1.43
VPS13A-205ENST00000376636 VCANP13611 3396 aa6.14□□□□□ -1.43
VPS13A-205ENST00000376636 XP32Q5T750 250 aa6.13□□□□□ -1.43
VPS13A-205ENST00000376636 USP34Q70CQ2 3546 aa6.09□□□□□ -1.43
VPS13A-205ENST00000376636 PDZD2O15018 2839 aa6.09□□□□□ -1.43
VPS13A-205ENST00000376636 TPRXLQ17RH7 258 aa6.09□□□□□ -1.44
VPS13A-205ENST00000376636 COL6A3P12111 3177 aa6.08□□□□□ -1.44
VPS13A-205ENST00000376636 KRTAP10-10P60014 251 aa6.07□□□□□ -1.44
VPS13A-205ENST00000376636 TNRC18O15417 2968 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-205ENST00000376636 NBEAQ8NFP9 2946 aa6.06□□□□□ -1.44
VPS13A-205ENST00000376636 A0A1B0GVY2 172 aa6.04□□□□□ -1.44
VPS13A-205ENST00000376636 BOD1L1Q8NFC6 3051 aa6.04□□□□□ -1.44
VPS13A-205ENST00000376636 ZZEF1O43149 2961 aa6.03□□□□□ -1.44
VPS13A-205ENST00000376636 DCHS2Q6V1P9 2916 aa6.01□□□□□ -1.45
VPS13A-205ENST00000376636 SZT2Q5T011 3432 aa6.01□□□□□ -1.45
VPS13A-205ENST00000376636 HTTP42858 3142 aa6□□□□□ -1.45
VPS13A-205ENST00000376636 SPEGQ15772 3267 aa5.98□□□□□ -1.45
VPS13A-205ENST00000376636 SRRM2Q9UQ35 2752 aaKnown RBP5.96□□□□□ -1.46
VPS13A-205ENST00000376636 CELSR1Q9NYQ6 3014 aa5.95□□□□□ -1.46
VPS13A-205ENST00000376636 ATMQ13315 3056 aa5.95□□□□□ -1.46
VPS13A-205ENST00000376636 KRTAP13-4Q3LI77 160 aa5.93□□□□□ -1.46
VPS13A-205ENST00000376636 TENM4Q6N022 2769 aa5.93□□□□□ -1.46
VPS13A-205ENST00000376636 KRTAP12-2P59991 146 aa5.92□□□□□ -1.46
VPS13A-205ENST00000376636 KRTAP1-4P0C5Y4 121 aa5.92□□□□□ -1.46
VPS13A-205ENST00000376636 ADGRG4Q8IZF6 3080 aa5.91□□□□□ -1.46
VPS13A-205ENST00000376636 CFAP47Q6ZTR5 3102 aa5.91□□□□□ -1.46
VPS13A-205ENST00000376636 DMXL1Q9Y485 3027 aa5.9□□□□□ -1.47
VPS13A-205ENST00000376636 VWFP04275 2813 aa5.88□□□□□ -1.47
VPS13A-205ENST00000376636 INE1O15225 51 aa5.86□□□□□ -1.47
VPS13A-205ENST00000376636 KRTAP13-3Q3SY46 172 aa5.83□□□□□ -1.48
VPS13A-205ENST00000376636 ZANQ9Y493 2812 aa5.82□□□□□ -1.48
VPS13A-205ENST00000376636 FBN2P35556 2912 aa5.8□□□□□ -1.48
VPS13A-205ENST00000376636 PKD1L1Q8TDX9 2849 aa5.8□□□□□ -1.48
VPS13A-205ENST00000376636 KRTAP15-1Q3LI76 137 aa5.75□□□□□ -1.49
VPS13A-205ENST00000376636 MXRA5Q9NR99 2828 aa5.74□□□□□ -1.49
VPS13A-205ENST00000376636 KRTAP12-1P59990 96 aa5.71□□□□□ -1.5
VPS13A-205ENST00000376636 TENM2Q9NT68 2774 aa5.7□□□□□ -1.5
VPS13A-205ENST00000376636 DCHS1Q96JQ0 3298 aa5.69□□□□□ -1.5
VPS13A-205ENST00000376636 HRNRQ86YZ3 2850 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-205ENST00000376636 ZFHX4Q86UP3 3567 aa5.65□□□□□ -1.51
VPS13A-205ENST00000376636 COL7A1Q02388 2944 aa5.63□□□□□ -1.51
VPS13A-205ENST00000376636 ASPMQ8IZT6 3477 aa5.62□□□□□ -1.51
VPS13A-205ENST00000376636 NBPF19A0A087WUL8 3843 aa5.58□□□□□ -1.52
VPS13A-205ENST00000376636 LOC400499M0QZD8 3231 aa5.58□□□□□ -1.52
VPS13A-205ENST00000376636 EYSQ5T1H1 3165 aa5.58□□□□□ -1.52
VPS13A-205ENST00000376636 MYO15AQ9UKN7 3530 aa5.57□□□□□ -1.52
VPS13A-205ENST00000376636 SPTBN5Q9NRC6 3674 aaKnown RBP5.54□□□□□ -1.52
VPS13A-205ENST00000376636 WDFY3Q8IZQ1 3526 aa5.54□□□□□ -1.52
VPS13A-205ENST00000376636 MEGF8Q7Z7M0 2845 aa5.51□□□□□ -1.53
VPS13A-205ENST00000376636 ZFHX3Q15911 3703 aa5.45□□□□□ -1.54
VPS13A-205ENST00000376636 LAMA5O15230 3695 aa5.41□□□□□ -1.54
VPS13A-205ENST00000376636 KRTAP10-12P60413 245 aa5.39□□□□□ -1.55
VPS13A-205ENST00000376636 RELNP78509 3460 aa5.36□□□□□ -1.55
VPS13A-205ENST00000376636 SMG1Q96Q15 3661 aaKnown RBP5.34□□□□□ -1.55
VPS13A-205ENST00000376636 KRTAP3-1Q9BYR8 98 aa5.32□□□□□ -1.56
VPS13A-205ENST00000376636 FBN3Q75N90 2809 aa5.32□□□□□ -1.56
VPS13A-205ENST00000376636 KRTAP10-6P60371 365 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-205ENST00000376636 CRCT1Q9UGL9 99 aa5.3□□□□□ -1.56
VPS13A-205ENST00000376636 SPENQ96T58 3664 aaKnown RBP5.29□□□□□ -1.56
VPS13A-205ENST00000376636 KRTAP23-1A1A580 65 aa5.27□□□□□ -1.57
VPS13A-205ENST00000376636 FBN1P35555 2871 aaKnown RBP5.24□□□□□ -1.57
VPS13A-205ENST00000376636 CSMD1Q96PZ7 3565 aa5.23□□□□□ -1.57
VPS13A-205ENST00000376636 DMDP11532 3685 aa5.23□□□□□ -1.57
VPS13A-205ENST00000376636 KRTAP12-3P60328 96 aa5.2□□□□□ -1.58
VPS13A-205ENST00000376636 OTOGQ6ZRI0 2925 aa5.16□□□□□ -1.58
VPS13A-205ENST00000376636 MUC3AQ02505 3323 aa5.06□□□□□ -1.6
VPS13A-205ENST00000376636 KRTAP10-5P60370 271 aa5.05□□□□□ -1.6
VPS13A-205ENST00000376636 TRRAPQ9Y4A5 3859 aa5.05□□□□□ -1.6
VPS13A-205ENST00000376636 VPS13CQ709C8 3753 aa5.03□□□□□ -1.6
VPS13A-205ENST00000376636 CUBNO60494 3623 aa5.02□□□□□ -1.61
VPS13A-205ENST00000376636 KRTAP3-2Q9BYR7 98 aa5.02□□□□□ -1.61
VPS13A-205ENST00000376636 LCE3AQ5TA76 89 aa5□□□□□ -1.61
VPS13A-205ENST00000376636 KRTAP3-3Q9BYR6 98 aa4.99□□□□□ -1.61
VPS13A-205ENST00000376636 SVEP1Q4LDE5 3571 aa4.97□□□□□ -1.61
VPS13A-205ENST00000376636 CSMD3Q7Z407 3707 aa4.93□□□□□ -1.62
VPS13A-205ENST00000376636 AKAP9Q99996 3911 aa4.91□□□□□ -1.62
VPS13A-205ENST00000376636 KRTAP8-1Q8IUC2 63 aa4.86□□□□□ -1.63
VPS13A-205ENST00000376636 CSMD2Q7Z408 3487 aa4.8□□□□□ -1.64
VPS13A-205ENST00000376636 MT1HL1P0DM35 61 aa4.76□□□□□ -1.65
VPS13A-205ENST00000376636 ALMS1Q8TCU4 4167 aa4.71□□□□□ -1.66
VPS13A-205ENST00000376636 BSNQ9UPA5 3926 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms