RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 ATMQ13315 3056 aa5.34□□□□□ -1.55
COL4A6-202ENST00000372216 UBR5O95071 2799 aaPredicted RBP5.34□□□□□ -1.55
COL4A6-202ENST00000372216 UTP20O75691 2785 aaKnown RBP5.34□□□□□ -1.55
COL4A6-202ENST00000372216 KRTAP10-10P60014 251 aa5.33□□□□□ -1.56
COL4A6-202ENST00000372216 ITPR1Q14643 2758 aa5.33□□□□□ -1.56
COL4A6-202ENST00000372216 EYSQ5T1H1 3165 aa5.33□□□□□ -1.56
COL4A6-202ENST00000372216 NSD1Q96L73 2696 aaPredicted RBP5.32□□□□□ -1.56
COL4A6-202ENST00000372216 MAP1AP78559 2803 aaPredicted RBP5.32□□□□□ -1.56
COL4A6-202ENST00000372216 COL12A1Q99715 3063 aa5.3□□□□□ -1.56
COL4A6-202ENST00000372216 DMXL2Q8TDJ6 3036 aa5.3□□□□□ -1.56
COL4A6-202ENST00000372216 KALRNO60229 2985 aa5.3□□□□□ -1.56
COL4A6-202ENST00000372216 HIVEP1P15822 2718 aa5.29□□□□□ -1.56
COL4A6-202ENST00000372216 FRYLO94915 3013 aa5.29□□□□□ -1.56
COL4A6-202ENST00000372216 KRTAP1-4P0C5Y4 121 aa5.29□□□□□ -1.56
COL4A6-202ENST00000372216 BOD1L1Q8NFC6 3051 aa5.29□□□□□ -1.56
COL4A6-202ENST00000372216 XP32Q5T750 250 aa5.27□□□□□ -1.57
COL4A6-202ENST00000372216 CRYBG3Q68DQ2 2970 aa5.25□□□□□ -1.57
COL4A6-202ENST00000372216 FLNCQ14315 2725 aa5.24□□□□□ -1.57
COL4A6-202ENST00000372216 TACC2O95359 2948 aa5.24□□□□□ -1.57
COL4A6-202ENST00000372216 APCP25054 2843 aa5.23□□□□□ -1.57
COL4A6-202ENST00000372216 ADGRG4Q8IZF6 3080 aa5.22□□□□□ -1.57
COL4A6-202ENST00000372216 DMBT1Q9UGM3 2413 aaPredicted RBP5.22□□□□□ -1.57
COL4A6-202ENST00000372216 CFAP47Q6ZTR5 3102 aa5.19□□□□□ -1.58
COL4A6-202ENST00000372216 STAB2Q8WWQ8 2551 aa5.19□□□□□ -1.58
COL4A6-202ENST00000372216 TPRXLQ17RH7 258 aa5.19□□□□□ -1.58
COL4A6-202ENST00000372216 P0C880 135 aa5.18□□□□□ -1.58
COL4A6-202ENST00000372216 MYO15AQ9UKN7 3530 aa5.18□□□□□ -1.58
COL4A6-202ENST00000372216 DMXL1Q9Y485 3027 aa5.18□□□□□ -1.58
COL4A6-202ENST00000372216 NBEAQ8NFP9 2946 aa5.16□□□□□ -1.58
COL4A6-202ENST00000372216 TENM4Q6N022 2769 aa5.15□□□□□ -1.59
COL4A6-202ENST00000372216 SPEGQ15772 3267 aa5.14□□□□□ -1.59
COL4A6-202ENST00000372216 REV3LO60673 3130 aa5.13□□□□□ -1.59
COL4A6-202ENST00000372216 PRO2289Q9P1D8 64 aa5.12□□□□□ -1.59
COL4A6-202ENST00000372216 KRTAP13-3Q3SY46 172 aa5.1□□□□□ -1.59
COL4A6-202ENST00000372216 HRNRQ86YZ3 2850 aaPredicted RBP5.1□□□□□ -1.59
COL4A6-202ENST00000372216 ZZEF1O43149 2961 aa5.1□□□□□ -1.59
COL4A6-202ENST00000372216 ASH1LQ9NR48 2969 aaKnown RBP5.04□□□□□ -1.6
COL4A6-202ENST00000372216 CELSR2Q9HCU4 2923 aa5.01□□□□□ -1.61
COL4A6-202ENST00000372216 WDFY3Q8IZQ1 3526 aa5.01□□□□□ -1.61
COL4A6-202ENST00000372216 NIPBLQ6KC79 2804 aaeCLIP5.01□□□□□ -1.61
COL4A6-202ENST00000372216 LOC400499M0QZD8 3231 aa5□□□□□ -1.61
COL4A6-202ENST00000372216 ASPMQ8IZT6 3477 aa4.99□□□□□ -1.61
COL4A6-202ENST00000372216 DCHS2Q6V1P9 2916 aa4.98□□□□□ -1.61
COL4A6-202ENST00000372216 ZANQ9Y493 2812 aa4.97□□□□□ -1.61
COL4A6-202ENST00000372216 NBPF19A0A087WUL8 3843 aa4.97□□□□□ -1.61
COL4A6-202ENST00000372216 H0YAA0 97 aa4.95□□□□□ -1.62
COL4A6-202ENST00000372216 PP632Q6XCG6 107 aa4.95□□□□□ -1.62
COL4A6-202ENST00000372216 ANK3Q12955 4377 aaKnown RBP4.93□□□□□ -1.62
COL4A6-202ENST00000372216 TENM2Q9NT68 2774 aa4.93□□□□□ -1.62
COL4A6-202ENST00000372216 CRCT1Q9UGL9 99 aa4.92□□□□□ -1.62
COL4A6-202ENST00000372216 RELNP78509 3460 aa4.91□□□□□ -1.62
COL4A6-202ENST00000372216 FBN2P35556 2912 aa4.9□□□□□ -1.62
COL4A6-202ENST00000372216 NF1P21359 2839 aa4.9□□□□□ -1.63
COL4A6-202ENST00000372216 CELSR1Q9NYQ6 3014 aa4.86□□□□□ -1.63
COL4A6-202ENST00000372216 PDZD2O15018 2839 aa4.84□□□□□ -1.63
COL4A6-202ENST00000372216 KRTAP12-2P59991 146 aa4.83□□□□□ -1.64
COL4A6-202ENST00000372216 DCHS1Q96JQ0 3298 aa4.82□□□□□ -1.64
COL4A6-202ENST00000372216 TENM1Q9UKZ4 2725 aa4.82□□□□□ -1.64
COL4A6-202ENST00000372216 LAMA5O15230 3695 aa4.81□□□□□ -1.64
COL4A6-202ENST00000372216 ZFHX4Q86UP3 3567 aa4.81□□□□□ -1.64
COL4A6-202ENST00000372216 DMDP11532 3685 aa4.79□□□□□ -1.64
COL4A6-202ENST00000372216 MXRA5Q9NR99 2828 aa4.78□□□□□ -1.64
COL4A6-202ENST00000372216 KRTAP15-1Q3LI76 137 aa4.75□□□□□ -1.65
COL4A6-202ENST00000372216 TENM3Q9P273 2699 aa4.72□□□□□ -1.65
COL4A6-202ENST00000372216 CSMD1Q96PZ7 3565 aa4.69□□□□□ -1.66
COL4A6-202ENST00000372216 ALMS1Q8TCU4 4167 aa4.67□□□□□ -1.66
COL4A6-202ENST00000372216 OTOGQ6ZRI0 2925 aa4.67□□□□□ -1.66
COL4A6-202ENST00000372216 HUWE1Q7Z6Z7 4374 aaKnown RBP4.67□□□□□ -1.66
COL4A6-202ENST00000372216 SMG1Q96Q15 3661 aaKnown RBP4.66□□□□□ -1.66
COL4A6-202ENST00000372216 TGP01266 2768 aa4.65□□□□□ -1.67
COL4A6-202ENST00000372216 KRTAP3-1Q9BYR8 98 aa4.65□□□□□ -1.67
COL4A6-202ENST00000372216 ZFHX3Q15911 3703 aa4.63□□□□□ -1.67
COL4A6-202ENST00000372216 KRTAP13-4Q3LI77 160 aa4.62□□□□□ -1.67
COL4A6-202ENST00000372216 MT1HL1P0DM35 61 aa4.62□□□□□ -1.67
COL4A6-202ENST00000372216 FBN1P35555 2871 aaKnown RBP4.61□□□□□ -1.67
COL4A6-202ENST00000372216 PKD1L1Q8TDX9 2849 aa4.61□□□□□ -1.67
COL4A6-202ENST00000372216 BSNQ9UPA5 3926 aa4.61□□□□□ -1.67
COL4A6-202ENST00000372216 KRTAP12-1P59990 96 aa4.6□□□□□ -1.67
COL4A6-202ENST00000372216 SPENQ96T58 3664 aaKnown RBP4.59□□□□□ -1.68
COL4A6-202ENST00000372216 CUBNO60494 3623 aa4.58□□□□□ -1.68
COL4A6-202ENST00000372216 KRTAP4-5Q9BYR2 181 aa4.58□□□□□ -1.68
COL4A6-202ENST00000372216 VWFP04275 2813 aa4.56□□□□□ -1.68
COL4A6-202ENST00000372216 CSMD2Q7Z408 3487 aa4.53□□□□□ -1.69
COL4A6-202ENST00000372216 TRRAPQ9Y4A5 3859 aa4.53□□□□□ -1.69
COL4A6-202ENST00000372216 SVEP1Q4LDE5 3571 aa4.52□□□□□ -1.69
COL4A6-202ENST00000372216 MUC3AQ02505 3323 aa4.52□□□□□ -1.69
COL4A6-202ENST00000372216 KRTAP10-4P60372 401 aaPredicted RBP4.49□□□□□ -1.69
COL4A6-202ENST00000372216 KRTAP10-6P60371 365 aaPredicted RBP4.46□□□□□ -1.69
COL4A6-202ENST00000372216 LORP23490 312 aaPredicted RBP4.43□□□□□ -1.7
COL4A6-202ENST00000372216 KRTAP10-12P60413 245 aa4.42□□□□□ -1.7
COL4A6-202ENST00000372216 AKAP9Q99996 3911 aa4.4□□□□□ -1.71
COL4A6-202ENST00000372216 DNAH9Q9NYC9 4486 aa4.4□□□□□ -1.71
COL4A6-202ENST00000372216 VPS13CQ709C8 3753 aa4.38□□□□□ -1.71
COL4A6-202ENST00000372216 KRTAP3-3Q9BYR6 98 aa4.36□□□□□ -1.71
COL4A6-202ENST00000372216 FBN3Q75N90 2809 aa4.34□□□□□ -1.72
COL4A6-202ENST00000372216 KRTAP3-2Q9BYR7 98 aa4.32□□□□□ -1.72
COL4A6-202ENST00000372216 INE1O15225 51 aa4.31□□□□□ -1.72
COL4A6-202ENST00000372216 KRTAP10-5P60370 271 aa4.29□□□□□ -1.72
COL4A6-202ENST00000372216 MEGF8Q7Z7M0 2845 aa4.28□□□□□ -1.72
COL4A6-202ENST00000372216 DNAH1Q9P2D7 4330 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms