RNA–Protein interactions for RNA: ENST00000358511.10

COL6A6-201, Transcript of collagen type VI alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL6A6, Length 9,581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6-201ENST00000358511 CFAP47Q6ZTR5 3102 aa5.29□□□□□ -1.56
COL6A6-201ENST00000358511 WDFY3Q8IZQ1 3526 aa5.27□□□□□ -1.57
COL6A6-201ENST00000358511 KRTAP4-16G5E9R7 235 aaPredicted RBP5.27□□□□□ -1.57
COL6A6-201ENST00000358511 ATMQ13315 3056 aa5.27□□□□□ -1.57
COL6A6-201ENST00000358511 FBN2P35556 2912 aa5.27□□□□□ -1.57
COL6A6-201ENST00000358511 PLAC8Q9NZF1 115 aa5.26□□□□□ -1.57
COL6A6-201ENST00000358511 KRTAP25-1Q3LHN0 102 aa5.26□□□□□ -1.57
COL6A6-201ENST00000358511 SPTBN5Q9NRC6 3674 aaKnown RBP5.26□□□□□ -1.57
COL6A6-201ENST00000358511 KRTAP1-3Q8IUG1 177 aa5.25□□□□□ -1.57
COL6A6-201ENST00000358511 SZT2Q5T011 3432 aa5.25□□□□□ -1.57
COL6A6-201ENST00000358511 PDZD2O15018 2839 aa5.24□□□□□ -1.57
COL6A6-201ENST00000358511 HRNRQ86YZ3 2850 aaPredicted RBP5.24□□□□□ -1.57
COL6A6-201ENST00000358511 DCHS2Q6V1P9 2916 aa5.24□□□□□ -1.57
COL6A6-201ENST00000358511 P0C880 135 aa5.23□□□□□ -1.57
COL6A6-201ENST00000358511 KRTAP1-1Q07627 177 aa5.21□□□□□ -1.58
COL6A6-201ENST00000358511 NDUFAF8A1L188 74 aa5.21□□□□□ -1.58
COL6A6-201ENST00000358511 TGP01266 2768 aa5.18□□□□□ -1.58
COL6A6-201ENST00000358511 A8MU10 97 aa5.18□□□□□ -1.58
COL6A6-201ENST00000358511 MYO15AQ9UKN7 3530 aa5.17□□□□□ -1.58
COL6A6-201ENST00000358511 ADM2Q7Z4H4 148 aa5.17□□□□□ -1.58
COL6A6-201ENST00000358511 TENM1Q9UKZ4 2725 aa5.16□□□□□ -1.58
COL6A6-201ENST00000358511 SPEGQ15772 3267 aa5.16□□□□□ -1.58
COL6A6-201ENST00000358511 PANO1I0J062 215 aa5.14□□□□□ -1.59
COL6A6-201ENST00000358511 MXRA5Q9NR99 2828 aa5.14□□□□□ -1.59
COL6A6-201ENST00000358511 KRTAP1-5Q9BYS1 174 aa5.12□□□□□ -1.59
COL6A6-201ENST00000358511 EYSQ5T1H1 3165 aa5.11□□□□□ -1.59
COL6A6-201ENST00000358511 TENM3Q9P273 2699 aa5.1□□□□□ -1.59
COL6A6-201ENST00000358511 SRRM2Q9UQ35 2752 aaKnown RBP5.08□□□□□ -1.6
COL6A6-201ENST00000358511 NOTCH2NLQ7Z3S9 236 aa5.08□□□□□ -1.6
COL6A6-201ENST00000358511 CELSR1Q9NYQ6 3014 aa5.07□□□□□ -1.6
COL6A6-201ENST00000358511 ASPMQ8IZT6 3477 aa5.06□□□□□ -1.6
COL6A6-201ENST00000358511 C10orf95Q9H7T3 257 aa5.05□□□□□ -1.6
COL6A6-201ENST00000358511 A8MUU9 505 aa5.05□□□□□ -1.6
COL6A6-201ENST00000358511 LOC400499M0QZD8 3231 aa5.05□□□□□ -1.6
COL6A6-201ENST00000358511 LAMA5O15230 3695 aa5.01□□□□□ -1.61
COL6A6-201ENST00000358511 KRTAP11-1Q8IUC1 163 aa5□□□□□ -1.61
COL6A6-201ENST00000358511 DMDP11532 3685 aa4.98□□□□□ -1.61
COL6A6-201ENST00000358511 RPS29P62273 56 aaKnown RBP4.98□□□□□ -1.61
COL6A6-201ENST00000358511 DCHS1Q96JQ0 3298 aa4.96□□□□□ -1.61
COL6A6-201ENST00000358511 ZFHX3Q15911 3703 aa4.96□□□□□ -1.62
COL6A6-201ENST00000358511 KRTAP7-1Q8IUC3 87 aa4.94□□□□□ -1.62
COL6A6-201ENST00000358511 KRTAP13-1Q8IUC0 172 aa4.94□□□□□ -1.62
COL6A6-201ENST00000358511 SMG1Q96Q15 3661 aaKnown RBP4.93□□□□□ -1.62
COL6A6-201ENST00000358511 VWFP04275 2813 aa4.93□□□□□ -1.62
COL6A6-201ENST00000358511 KRTAP10-1P60331 282 aa4.91□□□□□ -1.62
COL6A6-201ENST00000358511 TNP1P09430 55 aa4.91□□□□□ -1.62
COL6A6-201ENST00000358511 CSMD1Q96PZ7 3565 aa4.91□□□□□ -1.62
COL6A6-201ENST00000358511 KRTAP10-2P60368 255 aa4.91□□□□□ -1.62
COL6A6-201ENST00000358511 PKD1L1Q8TDX9 2849 aa4.9□□□□□ -1.63
COL6A6-201ENST00000358511 RELNP78509 3460 aa4.9□□□□□ -1.63
COL6A6-201ENST00000358511 ZFHX4Q86UP3 3567 aa4.9□□□□□ -1.63
COL6A6-201ENST00000358511 SPENQ96T58 3664 aaKnown RBP4.89□□□□□ -1.63
COL6A6-201ENST00000358511 H0YAA0 97 aa4.87□□□□□ -1.63
COL6A6-201ENST00000358511 KRTAP10-8P60410 259 aa4.86□□□□□ -1.63
COL6A6-201ENST00000358511 TENM4Q6N022 2769 aa4.86□□□□□ -1.63
COL6A6-201ENST00000358511 PP632Q6XCG6 107 aa4.84□□□□□ -1.63
COL6A6-201ENST00000358511 Q6ZRN7 208 aaPredicted RBP4.84□□□□□ -1.64
COL6A6-201ENST00000358511 KRTAP13-2Q52LG2 175 aa4.83□□□□□ -1.64
COL6A6-201ENST00000358511 NBPF19A0A087WUL8 3843 aa4.78□□□□□ -1.64
COL6A6-201ENST00000358511 COL7A1Q02388 2944 aa4.75□□□□□ -1.65
COL6A6-201ENST00000358511 TENM2Q9NT68 2774 aa4.75□□□□□ -1.65
COL6A6-201ENST00000358511 SVEP1Q4LDE5 3571 aa4.73□□□□□ -1.65
COL6A6-201ENST00000358511 FBN1P35555 2871 aaKnown RBP4.73□□□□□ -1.65
COL6A6-201ENST00000358511 CUBNO60494 3623 aa4.71□□□□□ -1.66
COL6A6-201ENST00000358511 PRO2289Q9P1D8 64 aa4.71□□□□□ -1.66
COL6A6-201ENST00000358511 A0A1B0GVY2 172 aa4.7□□□□□ -1.66
COL6A6-201ENST00000358511 VPS13CQ709C8 3753 aa4.68□□□□□ -1.66
COL6A6-201ENST00000358511 MEGF8Q7Z7M0 2845 aa4.68□□□□□ -1.66
COL6A6-201ENST00000358511 OTOGQ6ZRI0 2925 aa4.64□□□□□ -1.67
COL6A6-201ENST00000358511 KRTAP10-10P60014 251 aa4.63□□□□□ -1.67
COL6A6-201ENST00000358511 FBN3Q75N90 2809 aa4.62□□□□□ -1.67
COL6A6-201ENST00000358511 KRTAP13-3Q3SY46 172 aa4.6□□□□□ -1.67
COL6A6-201ENST00000358511 KRTAP1-4P0C5Y4 121 aa4.57□□□□□ -1.68
COL6A6-201ENST00000358511 MUC3AQ02505 3323 aa4.55□□□□□ -1.68
COL6A6-201ENST00000358511 TRRAPQ9Y4A5 3859 aa4.54□□□□□ -1.68
COL6A6-201ENST00000358511 AKAP9Q99996 3911 aa4.54□□□□□ -1.68
COL6A6-201ENST00000358511 XP32Q5T750 250 aa4.54□□□□□ -1.68
COL6A6-201ENST00000358511 KRTAP12-2P59991 146 aa4.48□□□□□ -1.69
COL6A6-201ENST00000358511 CSMD2Q7Z408 3487 aa4.45□□□□□ -1.7
COL6A6-201ENST00000358511 TPRXLQ17RH7 258 aa4.44□□□□□ -1.7
COL6A6-201ENST00000358511 BSNQ9UPA5 3926 aa4.42□□□□□ -1.7
COL6A6-201ENST00000358511 KRTAP21-3Q3LHN1 58 aa4.42□□□□□ -1.7
COL6A6-201ENST00000358511 KRTAP13-4Q3LI77 160 aa4.4□□□□□ -1.7
COL6A6-201ENST00000358511 CSMD3Q7Z407 3707 aa4.39□□□□□ -1.71
COL6A6-201ENST00000358511 KRTAP12-1P59990 96 aa4.38□□□□□ -1.71
COL6A6-201ENST00000358511 CRCT1Q9UGL9 99 aa4.34□□□□□ -1.71
COL6A6-201ENST00000358511 KRTAP15-1Q3LI76 137 aa4.33□□□□□ -1.72
COL6A6-201ENST00000358511 ALMS1Q8TCU4 4167 aa4.27□□□□□ -1.73
COL6A6-201ENST00000358511 INE1O15225 51 aa4.26□□□□□ -1.73
COL6A6-201ENST00000358511 KRTAP3-1Q9BYR8 98 aa4.26□□□□□ -1.73
COL6A6-201ENST00000358511 KRTAP10-6P60371 365 aaPredicted RBP4.23□□□□□ -1.73
COL6A6-201ENST00000358511 ZNF469Q96JG9 3925 aaPredicted RBP4.15□□□□□ -1.75
COL6A6-201ENST00000358511 KRTAP23-1A1A580 65 aa4.09□□□□□ -1.75
COL6A6-201ENST00000358511 LYSTQ99698 3801 aa4.05□□□□□ -1.76
COL6A6-201ENST00000358511 KRTAP3-2Q9BYR7 98 aa4.05□□□□□ -1.76
COL6A6-201ENST00000358511 CMYA5Q8N3K9 4069 aa4.04□□□□□ -1.76
COL6A6-201ENST00000358511 KRTAP3-3Q9BYR6 98 aa4.02□□□□□ -1.77
COL6A6-201ENST00000358511 HECTD4Q9Y4D8 3996 aa4□□□□□ -1.77
COL6A6-201ENST00000358511 DNAH3Q8TD57 4116 aa3.98□□□□□ -1.77
COL6A6-201ENST00000358511 KRTAP10-7P60409 375 aaPredicted RBP3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms