RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 KALRNO60229 2985 aa9.8□□□□□ -0.84
COL18A1-202ENST00000355480 TENM4Q6N022 2769 aa9.76□□□□□ -0.85
COL18A1-202ENST00000355480 DMXL2Q8TDJ6 3036 aa9.75□□□□□ -0.85
COL18A1-202ENST00000355480 APCP25054 2843 aa9.75□□□□□ -0.85
COL18A1-202ENST00000355480 HIVEP1P15822 2718 aa9.74□□□□□ -0.85
COL18A1-202ENST00000355480 FLNCQ14315 2725 aa9.74□□□□□ -0.85
COL18A1-202ENST00000355480 ATMQ13315 3056 aa9.73□□□□□ -0.85
COL18A1-202ENST00000355480 KRTAP16-1A8MUX0 517 aa9.72□□□□□ -0.85
COL18A1-202ENST00000355480 CRYBG3Q68DQ2 2970 aa9.7□□□□□ -0.86
COL18A1-202ENST00000355480 COL12A1Q99715 3063 aa9.7□□□□□ -0.86
COL18A1-202ENST00000355480 XP32Q5T750 250 aa9.69□□□□□ -0.86
COL18A1-202ENST00000355480 LRBAP50851 2863 aa9.69□□□□□ -0.86
COL18A1-202ENST00000355480 SPTBN5Q9NRC6 3674 aaKnown RBP9.66□□□□□ -0.86
COL18A1-202ENST00000355480 A0A1B0GVY2 172 aa9.66□□□□□ -0.86
COL18A1-202ENST00000355480 C10orf95Q9H7T3 257 aa9.66□□□□□ -0.86
COL18A1-202ENST00000355480 ASH1LQ9NR48 2969 aaKnown RBP9.65□□□□□ -0.86
COL18A1-202ENST00000355480 KRTAP1-4P0C5Y4 121 aa9.65□□□□□ -0.86
COL18A1-202ENST00000355480 KRTAP10-8P60410 259 aa9.64□□□□□ -0.87
COL18A1-202ENST00000355480 BOD1L1Q8NFC6 3051 aa9.64□□□□□ -0.87
COL18A1-202ENST00000355480 NDUFAF8A1L188 74 aa9.63□□□□□ -0.87
COL18A1-202ENST00000355480 NBEAQ8NFP9 2946 aa9.59□□□□□ -0.87
COL18A1-202ENST00000355480 FRYLO94915 3013 aa9.59□□□□□ -0.87
COL18A1-202ENST00000355480 ADGRG4Q8IZF6 3080 aa9.56□□□□□ -0.88
COL18A1-202ENST00000355480 NIPBLQ6KC79 2804 aaeCLIP9.55□□□□□ -0.881e-6■■■■□ 20.9
COL18A1-202ENST00000355480 CFAP47Q6ZTR5 3102 aa9.54□□□□□ -0.88
COL18A1-202ENST00000355480 TPRXLQ17RH7 258 aa9.5□□□□□ -0.89
COL18A1-202ENST00000355480 SPEGQ15772 3267 aa9.5□□□□□ -0.89
COL18A1-202ENST00000355480 CELSR2Q9HCU4 2923 aa9.49□□□□□ -0.89
COL18A1-202ENST00000355480 PP632Q6XCG6 107 aa9.47□□□□□ -0.89
COL18A1-202ENST00000355480 USP34Q70CQ2 3546 aa9.46□□□□□ -0.89
COL18A1-202ENST00000355480 KRTAP10-10P60014 251 aa9.45□□□□□ -0.9
COL18A1-202ENST00000355480 ZZEF1O43149 2961 aa9.39□□□□□ -0.91
COL18A1-202ENST00000355480 DCHS2Q6V1P9 2916 aa9.38□□□□□ -0.91
COL18A1-202ENST00000355480 EYSQ5T1H1 3165 aa9.35□□□□□ -0.91
COL18A1-202ENST00000355480 H0YAA0 97 aa9.33□□□□□ -0.92
COL18A1-202ENST00000355480 KRTAP13-3Q3SY46 172 aa9.32□□□□□ -0.92
COL18A1-202ENST00000355480 PRO2289Q9P1D8 64 aa9.31□□□□□ -0.92
COL18A1-202ENST00000355480 MYO15AQ9UKN7 3530 aa9.28□□□□□ -0.92
COL18A1-202ENST00000355480 TENM3Q9P273 2699 aa9.27□□□□□ -0.93
COL18A1-202ENST00000355480 TENM1Q9UKZ4 2725 aa9.24□□□□□ -0.93
COL18A1-202ENST00000355480 P0C880 135 aa9.21□□□□□ -0.94
COL18A1-202ENST00000355480 ZANQ9Y493 2812 aa9.2□□□□□ -0.94
COL18A1-202ENST00000355480 TNRC18O15417 2968 aaPredicted RBP9.18□□□□□ -0.94
COL18A1-202ENST00000355480 TENM2Q9NT68 2774 aa9.17□□□□□ -0.94
COL18A1-202ENST00000355480 DMXL1Q9Y485 3027 aa9.14□□□□□ -0.95
COL18A1-202ENST00000355480 NF1P21359 2839 aa9.13□□□□□ -0.95
COL18A1-202ENST00000355480 HRNRQ86YZ3 2850 aaPredicted RBP9.12□□□□□ -0.95
COL18A1-202ENST00000355480 LOC400499M0QZD8 3231 aa9.12□□□□□ -0.95
COL18A1-202ENST00000355480 WDFY3Q8IZQ1 3526 aa8.99□□□□□ -0.97
COL18A1-202ENST00000355480 FBN2P35556 2912 aa8.99□□□□□ -0.97
COL18A1-202ENST00000355480 ASPMQ8IZT6 3477 aa8.96□□□□□ -0.98
COL18A1-202ENST00000355480 TGP01266 2768 aa8.94□□□□□ -0.98
COL18A1-202ENST00000355480 CELSR1Q9NYQ6 3014 aa8.91□□□□□ -0.98
COL18A1-202ENST00000355480 PKD1L1Q8TDX9 2849 aa8.89□□□□□ -0.99
COL18A1-202ENST00000355480 ZFHX4Q86UP3 3567 aa8.88□□□□□ -0.99
COL18A1-202ENST00000355480 RELNP78509 3460 aa8.87□□□□□ -0.99
COL18A1-202ENST00000355480 DCHS1Q96JQ0 3298 aa8.84□□□□□ -0.99
COL18A1-202ENST00000355480 KRTAP12-2P59991 146 aa8.83□□□□□ -1
COL18A1-202ENST00000355480 MXRA5Q9NR99 2828 aa8.79□□□□□ -1
COL18A1-202ENST00000355480 VWFP04275 2813 aa8.75□□□□□ -1.01
COL18A1-202ENST00000355480 CSMD1Q96PZ7 3565 aa8.73□□□□□ -1.01
COL18A1-202ENST00000355480 PDZD2O15018 2839 aa8.73□□□□□ -1.01
COL18A1-202ENST00000355480 KRTAP13-4Q3LI77 160 aa8.72□□□□□ -1.01
COL18A1-202ENST00000355480 LAMA5O15230 3695 aa8.66□□□□□ -1.02
COL18A1-202ENST00000355480 KRTAP12-1P59990 96 aa8.65□□□□□ -1.03
COL18A1-202ENST00000355480 NBPF19A0A087WUL8 3843 aa8.59□□□□□ -1.03
COL18A1-202ENST00000355480 KRTAP3-1Q9BYR8 98 aa8.57□□□□□ -1.04
COL18A1-202ENST00000355480 SMG1Q96Q15 3661 aaKnown RBP8.56□□□□□ -1.04
COL18A1-202ENST00000355480 DMDP11532 3685 aa8.55□□□□□ -1.04
COL18A1-202ENST00000355480 KRTAP15-1Q3LI76 137 aa8.48□□□□□ -1.05
COL18A1-202ENST00000355480 SRRM2Q9UQ35 2752 aaKnown RBP8.39□□□□□ -1.07
COL18A1-202ENST00000355480 SVEP1Q4LDE5 3571 aa8.37□□□□□ -1.07
COL18A1-202ENST00000355480 ANK3Q12955 4377 aaKnown RBP8.37□□□□□ -1.07
COL18A1-202ENST00000355480 KRTAP10-6P60371 365 aaPredicted RBP8.32□□□□□ -1.08
COL18A1-202ENST00000355480 FBN1P35555 2871 aaKnown RBP8.31□□□□□ -1.08
COL18A1-202ENST00000355480 MT1HL1P0DM35 61 aa8.27□□□□□ -1.09
COL18A1-202ENST00000355480 OTOGQ6ZRI0 2925 aa8.2□□□□□ -1.1
COL18A1-202ENST00000355480 FBN3Q75N90 2809 aa8.18□□□□□ -1.1
COL18A1-202ENST00000355480 SPENQ96T58 3664 aaKnown RBP8.17□□□□□ -1.1
COL18A1-202ENST00000355480 ZFHX3Q15911 3703 aa8.15□□□□□ -1.1
COL18A1-202ENST00000355480 CSMD2Q7Z408 3487 aa8.12□□□□□ -1.11
COL18A1-202ENST00000355480 MEGF8Q7Z7M0 2845 aa8.11□□□□□ -1.11
COL18A1-202ENST00000355480 CRCT1Q9UGL9 99 aa8.11□□□□□ -1.11
COL18A1-202ENST00000355480 CUBNO60494 3623 aa8.1□□□□□ -1.11
COL18A1-202ENST00000355480 MUC3AQ02505 3323 aa8.1□□□□□ -1.11
COL18A1-202ENST00000355480 KRTAP10-12P60413 245 aa8.09□□□□□ -1.11
COL18A1-202ENST00000355480 KRTAP4-5Q9BYR2 181 aa8.06□□□□□ -1.12
COL18A1-202ENST00000355480 COL7A1Q02388 2944 aa8.03□□□□□ -1.12
COL18A1-202ENST00000355480 BSNQ9UPA5 3926 aa8.02□□□□□ -1.13
COL18A1-202ENST00000355480 KRTAP3-3Q9BYR6 98 aa8□□□□□ -1.13
COL18A1-202ENST00000355480 TRRAPQ9Y4A5 3859 aa7.99□□□□□ -1.13
COL18A1-202ENST00000355480 KRTAP3-2Q9BYR7 98 aa7.99□□□□□ -1.13
COL18A1-202ENST00000355480 HUWE1Q7Z6Z7 4374 aaKnown RBP7.97□□□□□ -1.13
COL18A1-202ENST00000355480 KRTAP10-4P60372 401 aaPredicted RBP7.93□□□□□ -1.14
COL18A1-202ENST00000355480 KRTAP12-3P60328 96 aa7.84□□□□□ -1.15
COL18A1-202ENST00000355480 VPS13CQ709C8 3753 aa7.84□□□□□ -1.15
COL18A1-202ENST00000355480 INE1O15225 51 aa7.8□□□□□ -1.16
COL18A1-202ENST00000355480 LCE3AQ5TA76 89 aa7.73□□□□□ -1.17
COL18A1-202ENST00000355480 ALMS1Q8TCU4 4167 aa7.65□□□□□ -1.19
COL18A1-202ENST00000355480 LORP23490 312 aaPredicted RBP7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms