RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 KRTAP10-4P60372 401 aaPredicted RBP1.64□□□□□ -2.15
NEDD4-201ENST00000338963 KRTAP21-3Q3LHN1 58 aa1.64□□□□□ -2.15
NEDD4-201ENST00000338963 KRTAP5-2Q701N4 177 aa1.64□□□□□ -2.15
NEDD4-201ENST00000338963 WDFY3Q8IZQ1 3526 aa1.63□□□□□ -2.15
NEDD4-201ENST00000338963 KRTAP12-3P60328 96 aa1.63□□□□□ -2.15
NEDD4-201ENST00000338963 CCDC168Q8NDH2 2452 aa1.63□□□□□ -2.15
NEDD4-201ENST00000338963 DNAH9Q9NYC9 4486 aa1.63□□□□□ -2.15
NEDD4-201ENST00000338963 CENPEQ02224 2701 aa1.63□□□□□ -2.15
NEDD4-201ENST00000338963 MYO18BQ8IUG5 2567 aa1.63□□□□□ -2.15
NEDD4-201ENST00000338963 DMDP11532 3685 aa1.63□□□□□ -2.15
NEDD4-201ENST00000338963 DYNC1H1Q14204 4646 aaKnown RBP1.63□□□□□ -2.15
NEDD4-201ENST00000338963 FLNBO75369 2602 aaKnown RBP1.62□□□□□ -2.15
NEDD4-201ENST00000338963 CEP295Q9C0D2 2601 aa1.62□□□□□ -2.15
NEDD4-201ENST00000338963 TGP01266 2768 aa1.62□□□□□ -2.15
NEDD4-201ENST00000338963 KRTAP4-12Q9BQ66 201 aa1.62□□□□□ -2.15
NEDD4-201ENST00000338963 RELNP78509 3460 aa1.61□□□□□ -2.15
NEDD4-201ENST00000338963 HELZ2Q9BYK8 2649 aaKnown RBP1.61□□□□□ -2.15
NEDD4-201ENST00000338963 HRNRQ86YZ3 2850 aaPredicted RBP1.61□□□□□ -2.15
NEDD4-201ENST00000338963 SPENQ96T58 3664 aaKnown RBP1.61□□□□□ -2.15
NEDD4-201ENST00000338963 HECTD1Q9ULT8 2610 aa1.6□□□□□ -2.15
NEDD4-201ENST00000338963 PLECQ15149 4684 aaKnown RBP1.6□□□□□ -2.15
NEDD4-201ENST00000338963 HSPG2P98160 4391 aa1.6□□□□□ -2.15
NEDD4-201ENST00000338963 NBEAL2Q6ZNJ1 2754 aa1.6□□□□□ -2.15
NEDD4-201ENST00000338963 ZNF292O60281 2723 aa1.6□□□□□ -2.15
NEDD4-201ENST00000338963 TNRC18O15417 2968 aaPredicted RBP1.6□□□□□ -2.15
NEDD4-201ENST00000338963 NIPBLQ6KC79 2804 aaeCLIP1.59□□□□□ -2.15
NEDD4-201ENST00000338963 SZT2Q5T011 3432 aa1.59□□□□□ -2.15
NEDD4-201ENST00000338963 DMBT1Q9UGM3 2413 aaPredicted RBP1.59□□□□□ -2.15
NEDD4-201ENST00000338963 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.58□□□□□ -2.16
NEDD4-201ENST00000338963 ABCA12Q86UK0 2595 aa1.58□□□□□ -2.16
NEDD4-201ENST00000338963 NOTCH2Q04721 2471 aa1.58□□□□□ -2.16
NEDD4-201ENST00000338963 USP24Q9UPU5 2620 aa1.58□□□□□ -2.16
NEDD4-201ENST00000338963 BRCA2P51587 3418 aa1.57□□□□□ -2.16
NEDD4-201ENST00000338963 ANK3Q12955 4377 aaKnown RBP1.57□□□□□ -2.16
NEDD4-201ENST00000338963 CEP350Q5VT06 3117 aa1.57□□□□□ -2.16
NEDD4-201ENST00000338963 HTTP42858 3142 aa1.57□□□□□ -2.16
NEDD4-201ENST00000338963 TENM4Q6N022 2769 aa1.57□□□□□ -2.16
NEDD4-201ENST00000338963 CMYA5Q8N3K9 4069 aa1.57□□□□□ -2.16
NEDD4-201ENST00000338963 STARD9Q9P2P6 4700 aa1.56□□□□□ -2.16
NEDD4-201ENST00000338963 ZFHX4Q86UP3 3567 aa1.56□□□□□ -2.16
NEDD4-201ENST00000338963 MGAQ8IWI9 3026 aa1.56□□□□□ -2.16
NEDD4-201ENST00000338963 MYO15AQ9UKN7 3530 aa1.56□□□□□ -2.16
NEDD4-201ENST00000338963 KRTAP10-12P60413 245 aa1.56□□□□□ -2.16
NEDD4-201ENST00000338963 HIVEP1P15822 2718 aa1.56□□□□□ -2.16
NEDD4-201ENST00000338963 KRTAP10-5P60370 271 aa1.55□□□□□ -2.16
NEDD4-201ENST00000338963 NF1P21359 2839 aa1.55□□□□□ -2.16
NEDD4-201ENST00000338963 COL6A5A8TX70 2615 aa1.55□□□□□ -2.16
NEDD4-201ENST00000338963 BIRC6Q9NR09 4857 aa1.55□□□□□ -2.16
NEDD4-201ENST00000338963 DNAH14Q0VDD8 3507 aa1.55□□□□□ -2.16
NEDD4-201ENST00000338963 DNAH5Q8TE73 4624 aa1.55□□□□□ -2.16
NEDD4-201ENST00000338963 KRTAP2-3P0C7H8 128 aa1.54□□□□□ -2.16
NEDD4-201ENST00000338963 KRTAP2-4Q9BYR9 128 aa1.54□□□□□ -2.16
NEDD4-201ENST00000338963 KRTAP2-1Q9BYU5 128 aa1.54□□□□□ -2.16
NEDD4-201ENST00000338963 SETD2Q9BYW2 2564 aaPredicted RBP1.54□□□□□ -2.16
NEDD4-201ENST00000338963 ITPR3Q14573 2671 aa1.54□□□□□ -2.16
NEDD4-201ENST00000338963 SMG1Q96Q15 3661 aaKnown RBP1.54□□□□□ -2.16
NEDD4-201ENST00000338963 TEX15Q9BXT5 2789 aa1.54□□□□□ -2.16
NEDD4-201ENST00000338963 MKI67P46013 3256 aaKnown RBP1.53□□□□□ -2.16
NEDD4-201ENST00000338963 LCE3CQ5T5A8 94 aa1.53□□□□□ -2.16
NEDD4-201ENST00000338963 SPRR2GQ9BYE4 73 aa1.53□□□□□ -2.16
NEDD4-201ENST00000338963 KRTAP9-2Q9BYQ4 174 aa1.53□□□□□ -2.17
NEDD4-201ENST00000338963 ASH1LQ9NR48 2969 aaKnown RBP1.53□□□□□ -2.17
NEDD4-201ENST00000338963 MGAM2Q2M2H8 2515 aa1.52□□□□□ -2.17
NEDD4-201ENST00000338963 KRTAP4-8Q9BYQ9 185 aa1.52□□□□□ -2.17
NEDD4-201ENST00000338963 CDH23Q9H251 3354 aa1.52□□□□□ -2.17
NEDD4-201ENST00000338963 VCANP13611 3396 aa1.52□□□□□ -2.17
NEDD4-201ENST00000338963 RANBP2P49792 3224 aaKnown RBP1.52□□□□□ -2.17
NEDD4-201ENST00000338963 PCLOQ9Y6V0 5065 aa1.52□□□□□ -2.17
NEDD4-201ENST00000338963 NSD1Q96L73 2696 aaPredicted RBP1.52□□□□□ -2.17
NEDD4-201ENST00000338963 FAT2Q9NYQ8 4349 aa1.51□□□□□ -2.17
NEDD4-201ENST00000338963 NBPF19A0A087WUL8 3843 aa1.51□□□□□ -2.17
NEDD4-201ENST00000338963 FLNAP21333 2647 aaKnown RBP1.51□□□□□ -2.17
NEDD4-201ENST00000338963 CFAP46Q8IYW2 2715 aa1.5□□□□□ -2.17
NEDD4-201ENST00000338963 UNC80Q8N2C7 3258 aa1.5□□□□□ -2.17
NEDD4-201ENST00000338963 LRP1Q07954 4544 aaKnown RBP1.49□□□□□ -2.17
NEDD4-201ENST00000338963 CFAP54Q96N23 3096 aa1.49□□□□□ -2.17
NEDD4-201ENST00000338963 DSPP15924 2871 aaKnown RBP1.49□□□□□ -2.17
NEDD4-201ENST00000338963 LRBAP50851 2863 aa1.49□□□□□ -2.17
NEDD4-201ENST00000338963 SRRM2Q9UQ35 2752 aaKnown RBP1.49□□□□□ -2.17
NEDD4-201ENST00000338963 MUC3AQ02505 3323 aa1.49□□□□□ -2.17
NEDD4-201ENST00000338963 KRTAP9-9Q9BYP9 154 aa1.49□□□□□ -2.17
NEDD4-201ENST00000338963 KRTAP9-4Q9BYQ2 154 aa1.49□□□□□ -2.17
NEDD4-201ENST00000338963 DNAH12Q6ZR08 3092 aa1.49□□□□□ -2.17
NEDD4-201ENST00000338963 TEP1Q99973 2627 aaKnown RBP1.49□□□□□ -2.17
NEDD4-201ENST00000338963 FAT3Q8TDW7 4589 aa1.49□□□□□ -2.17
NEDD4-201ENST00000338963 KRTAP9-6A0A140TA67 174 aa1.48□□□□□ -2.17
NEDD4-201ENST00000338963 CELSR2Q9HCU4 2923 aa1.48□□□□□ -2.17
NEDD4-201ENST00000338963 LRP1BQ9NZR2 4599 aa1.48□□□□□ -2.17
NEDD4-201ENST00000338963 MT1HL1P0DM35 61 aa1.47□□□□□ -2.17
NEDD4-201ENST00000338963 APCP25054 2843 aa1.47□□□□□ -2.17
NEDD4-201ENST00000338963 UBR5O95071 2799 aaPredicted RBP1.47□□□□□ -2.17
NEDD4-201ENST00000338963 FRYQ5TBA9 3013 aa1.47□□□□□ -2.17
NEDD4-201ENST00000338963 TENM3Q9P273 2699 aa1.47□□□□□ -2.17
NEDD4-201ENST00000338963 NBEAL1Q6ZS30 2694 aa1.47□□□□□ -2.17
NEDD4-201ENST00000338963 FRYLO94915 3013 aa1.46□□□□□ -2.17
NEDD4-201ENST00000338963 PDZD2O15018 2839 aa1.46□□□□□ -2.17
NEDD4-201ENST00000338963 SPEGQ15772 3267 aa1.46□□□□□ -2.18
NEDD4-201ENST00000338963 XIRP2A4UGR9 3374 aa1.46□□□□□ -2.18
NEDD4-201ENST00000338963 KALRNO60229 2985 aa1.46□□□□□ -2.18
NEDD4-201ENST00000338963 DNAH6Q9C0G6 4158 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms