RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 KRTAP10-12P60413 245 aa2.52□□□□□ -2.01
PTPRB-202ENST00000334414 VPS13AQ96RL7 3174 aa2.51□□□□□ -2.01
PTPRB-202ENST00000334414 IGSF10Q6WRI0 2623 aa2.51□□□□□ -2.01
PTPRB-202ENST00000334414 TNRC18O15417 2968 aaPredicted RBP2.51□□□□□ -2.01
PTPRB-202ENST00000334414 TEX15Q9BXT5 2789 aa2.51□□□□□ -2.01
PTPRB-202ENST00000334414 DSPP15924 2871 aaKnown RBP2.5□□□□□ -2.01
PTPRB-202ENST00000334414 A0A0C4DFX4 3053 aa2.5□□□□□ -2.01
PTPRB-202ENST00000334414 XIRP2A4UGR9 3374 aa2.5□□□□□ -2.01
PTPRB-202ENST00000334414 LAMA1P25391 3075 aa2.49□□□□□ -2.01
PTPRB-202ENST00000334414 CDH23Q9H251 3354 aa2.48□□□□□ -2.01
PTPRB-202ENST00000334414 FRYLO94915 3013 aa2.48□□□□□ -2.01
PTPRB-202ENST00000334414 UBR5O95071 2799 aaPredicted RBP2.48□□□□□ -2.01
PTPRB-202ENST00000334414 UNC80Q8N2C7 3258 aa2.48□□□□□ -2.01
PTPRB-202ENST00000334414 UTP20O75691 2785 aaKnown RBP2.47□□□□□ -2.01
PTPRB-202ENST00000334414 CFAP54Q96N23 3096 aa2.47□□□□□ -2.01
PTPRB-202ENST00000334414 KRTAP3-2Q9BYR7 98 aa2.47□□□□□ -2.01
PTPRB-202ENST00000334414 USP34Q70CQ2 3546 aa2.47□□□□□ -2.01
PTPRB-202ENST00000334414 VCANP13611 3396 aa2.46□□□□□ -2.02
PTPRB-202ENST00000334414 COL12A1Q99715 3063 aa2.46□□□□□ -2.02
PTPRB-202ENST00000334414 ADGRG4Q8IZF6 3080 aa2.46□□□□□ -2.02
PTPRB-202ENST00000334414 TGP01266 2768 aa2.46□□□□□ -2.02
PTPRB-202ENST00000334414 WDFY4Q6ZS81 3184 aa2.45□□□□□ -2.02
PTPRB-202ENST00000334414 FRYQ5TBA9 3013 aa2.45□□□□□ -2.02
PTPRB-202ENST00000334414 NBEAL2Q6ZNJ1 2754 aa2.45□□□□□ -2.02
PTPRB-202ENST00000334414 SZT2Q5T011 3432 aa2.45□□□□□ -2.02
PTPRB-202ENST00000334414 KRTAP3-3Q9BYR6 98 aa2.44□□□□□ -2.02
PTPRB-202ENST00000334414 KRTAP12-3P60328 96 aa2.44□□□□□ -2.02
PTPRB-202ENST00000334414 COL6A3P12111 3177 aa2.43□□□□□ -2.02
PTPRB-202ENST00000334414 DMXL2Q8TDJ6 3036 aa2.43□□□□□ -2.02
PTPRB-202ENST00000334414 ZFHX3Q15911 3703 aa2.42□□□□□ -2.02
PTPRB-202ENST00000334414 KRTAP19-4Q3LI73 84 aa2.41□□□□□ -2.02
PTPRB-202ENST00000334414 ATMQ13315 3056 aa2.41□□□□□ -2.02
PTPRB-202ENST00000334414 REV3LO60673 3130 aa2.4□□□□□ -2.02
PTPRB-202ENST00000334414 BOD1L1Q8NFC6 3051 aa2.4□□□□□ -2.03
PTPRB-202ENST00000334414 NIPBLQ6KC79 2804 aaeCLIP2.4□□□□□ -2.03
PTPRB-202ENST00000334414 NBEAQ8NFP9 2946 aa2.38□□□□□ -2.03
PTPRB-202ENST00000334414 DMXL1Q9Y485 3027 aa2.38□□□□□ -2.03
PTPRB-202ENST00000334414 FREM2Q5SZK8 3169 aa2.38□□□□□ -2.03
PTPRB-202ENST00000334414 KALRNO60229 2985 aa2.37□□□□□ -2.03
PTPRB-202ENST00000334414 SPTBN5Q9NRC6 3674 aaKnown RBP2.37□□□□□ -2.03
PTPRB-202ENST00000334414 LRBAP50851 2863 aa2.37□□□□□ -2.03
PTPRB-202ENST00000334414 FLNCQ14315 2725 aa2.36□□□□□ -2.03
PTPRB-202ENST00000334414 EYSQ5T1H1 3165 aa2.36□□□□□ -2.03
PTPRB-202ENST00000334414 ZZEF1O43149 2961 aa2.36□□□□□ -2.03
PTPRB-202ENST00000334414 LCE3AQ5TA76 89 aa2.35□□□□□ -2.03
PTPRB-202ENST00000334414 CELSR3Q9NYQ7 3312 aa2.35□□□□□ -2.03
PTPRB-202ENST00000334414 TENM3Q9P273 2699 aa2.34□□□□□ -2.03
PTPRB-202ENST00000334414 DNAH14Q0VDD8 3507 aa2.33□□□□□ -2.04
PTPRB-202ENST00000334414 HIVEP1P15822 2718 aa2.32□□□□□ -2.04
PTPRB-202ENST00000334414 HRNRQ86YZ3 2850 aaPredicted RBP2.3□□□□□ -2.04
PTPRB-202ENST00000334414 ASH1LQ9NR48 2969 aaKnown RBP2.29□□□□□ -2.04
PTPRB-202ENST00000334414 CELSR1Q9NYQ6 3014 aa2.29□□□□□ -2.04
PTPRB-202ENST00000334414 CRYBG3Q68DQ2 2970 aa2.28□□□□□ -2.04
PTPRB-202ENST00000334414 CELSR2Q9HCU4 2923 aa2.28□□□□□ -2.04
PTPRB-202ENST00000334414 LOC400499M0QZD8 3231 aa2.28□□□□□ -2.04
PTPRB-202ENST00000334414 TACC2O95359 2948 aa2.27□□□□□ -2.05
PTPRB-202ENST00000334414 TENM1Q9UKZ4 2725 aa2.27□□□□□ -2.05
PTPRB-202ENST00000334414 MXRA5Q9NR99 2828 aa2.27□□□□□ -2.05
PTPRB-202ENST00000334414 TENM4Q6N022 2769 aa2.26□□□□□ -2.05
PTPRB-202ENST00000334414 SRRM2Q9UQ35 2752 aaKnown RBP2.26□□□□□ -2.05
PTPRB-202ENST00000334414 MT1HL1P0DM35 61 aa2.25□□□□□ -2.05
PTPRB-202ENST00000334414 TENM2Q9NT68 2774 aa2.25□□□□□ -2.05
PTPRB-202ENST00000334414 NF1P21359 2839 aa2.25□□□□□ -2.05
PTPRB-202ENST00000334414 MYO15AQ9UKN7 3530 aa2.23□□□□□ -2.05
PTPRB-202ENST00000334414 KRTAP10-4P60372 401 aaPredicted RBP2.23□□□□□ -2.05
PTPRB-202ENST00000334414 KRTAP10-5P60370 271 aa2.23□□□□□ -2.05
PTPRB-202ENST00000334414 DCHS2Q6V1P9 2916 aa2.22□□□□□ -2.05
PTPRB-202ENST00000334414 CRCT1Q9UGL9 99 aa2.22□□□□□ -2.05
PTPRB-202ENST00000334414 CFAP47Q6ZTR5 3102 aa2.21□□□□□ -2.05
PTPRB-202ENST00000334414 BSNQ9UPA5 3926 aa2.2□□□□□ -2.06
PTPRB-202ENST00000334414 PDZD2O15018 2839 aa2.2□□□□□ -2.06
PTPRB-202ENST00000334414 WDFY3Q8IZQ1 3526 aa2.2□□□□□ -2.06
PTPRB-202ENST00000334414 SPEGQ15772 3267 aa2.19□□□□□ -2.06
PTPRB-202ENST00000334414 NBPF19A0A087WUL8 3843 aa2.19□□□□□ -2.06
PTPRB-202ENST00000334414 ZANQ9Y493 2812 aa2.19□□□□□ -2.06
PTPRB-202ENST00000334414 KRTAP8-1Q8IUC2 63 aa2.18□□□□□ -2.06
PTPRB-202ENST00000334414 SPRR2GQ9BYE4 73 aa2.18□□□□□ -2.06
PTPRB-202ENST00000334414 MUC3AQ02505 3323 aa2.18□□□□□ -2.06
PTPRB-202ENST00000334414 LCE3CQ5T5A8 94 aa2.18□□□□□ -2.06
PTPRB-202ENST00000334414 DNAH1Q9P2D7 4330 aa2.18□□□□□ -2.06
PTPRB-202ENST00000334414 OTOGQ6ZRI0 2925 aa2.17□□□□□ -2.06
PTPRB-202ENST00000334414 LAMA5O15230 3695 aa2.14□□□□□ -2.07
PTPRB-202ENST00000334414 DCHS1Q96JQ0 3298 aa2.14□□□□□ -2.07
PTPRB-202ENST00000334414 ALMS1Q8TCU4 4167 aa2.13□□□□□ -2.07
PTPRB-202ENST00000334414 ANK3Q12955 4377 aaKnown RBP2.12□□□□□ -2.07
PTPRB-202ENST00000334414 FBN2P35556 2912 aa2.11□□□□□ -2.07
PTPRB-202ENST00000334414 LORP23490 312 aaPredicted RBP2.11□□□□□ -2.07
PTPRB-202ENST00000334414 ZFHX4Q86UP3 3567 aa2.1□□□□□ -2.07
PTPRB-202ENST00000334414 VWFP04275 2813 aa2.1□□□□□ -2.07
PTPRB-202ENST00000334414 AKAP9Q99996 3911 aa2.1□□□□□ -2.07
PTPRB-202ENST00000334414 ASPMQ8IZT6 3477 aa2.1□□□□□ -2.07
PTPRB-202ENST00000334414 DMDP11532 3685 aa2.1□□□□□ -2.07
PTPRB-202ENST00000334414 SPRR5A0A1B0GTR4 108 aa2.09□□□□□ -2.07
PTPRB-202ENST00000334414 RELNP78509 3460 aa2.09□□□□□ -2.07
PTPRB-202ENST00000334414 KRTAP10-7P60409 375 aaPredicted RBP2.09□□□□□ -2.07
PTPRB-202ENST00000334414 MEGF8Q7Z7M0 2845 aa2.08□□□□□ -2.08
PTPRB-202ENST00000334414 ANK2Q01484 3957 aa2.06□□□□□ -2.08
PTPRB-202ENST00000334414 PKD1L1Q8TDX9 2849 aa2.05□□□□□ -2.08
PTPRB-202ENST00000334414 KRTAP19-5Q3LI72 72 aa2.04□□□□□ -2.08
PTPRB-202ENST00000334414 SPENQ96T58 3664 aaKnown RBP2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms